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Cardiac construction-Recent advances in morphological and transcriptional modeling of early heart development. 心脏构造--早期心脏发育的形态和转录建模的最新进展。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-02-24 DOI: 10.1016/bs.ctdb.2024.02.005
Emily S Noël

During human embryonic development the early establishment of a functional heart is vital to support the growing fetus. However, forming the embryonic heart is an extremely complex process, requiring spatiotemporally controlled cell specification and differentiation, tissue organization, and coordination of cardiac function. These complexities, in concert with the early and rapid development of the embryonic heart, mean that understanding the intricate interplay between these processes that help shape the early heart remains highly challenging. In this review I focus on recent insights from animal models that have shed new light on the earliest stages of heart development. This includes specification and organization of cardiac progenitors, cell and tissue movements that make and shape the early heart tube, and the initiation of the first beat in the developing heart. In addition I highlight relevant in vitro models that could support translation of findings from animal models to human heart development. Finally I discuss challenges that are being addressed in the field, along with future considerations that together may help move us towards a deeper understanding of how our hearts are made.

在人类胚胎发育过程中,早期建立功能性心脏对支持胎儿成长至关重要。然而,胚胎心脏的形成是一个极其复杂的过程,需要时空控制的细胞规范和分化、组织结构以及心脏功能的协调。这些复杂性加上胚胎心脏的早期快速发育,意味着理解这些有助于形成早期心脏的过程之间错综复杂的相互作用仍然极具挑战性。在这篇综述中,我将重点介绍最近从动物模型中获得的关于心脏早期发育的新见解。这包括心脏祖细胞的规格和组织、制造和塑造早期心管的细胞和组织运动以及发育中心脏第一次搏动的开始。此外,我还强调了相关的体外模型,这些模型可支持将动物模型的研究结果转化为人类心脏发育的结果。最后,我将讨论该领域正在应对的挑战,以及未来的考虑因素,这些因素加在一起可能有助于我们更深入地了解心脏是如何制造出来的。
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引用次数: 0
Chromatin organization of muscle stem cell. 肌肉干细胞的染色质组织
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-02-16 DOI: 10.1016/bs.ctdb.2024.01.014
Philina Santarelli, Valentina Rosti, Maria Vivo, Chiara Lanzuolo

The proper functioning of skeletal muscles is essential throughout life. A crucial crosstalk between the environment and several cellular mechanisms allows striated muscles to perform successfully. Notably, the skeletal muscle tissue reacts to an injury producing a completely functioning tissue. The muscle's robust regenerative capacity relies on the fine coordination between muscle stem cells (MuSCs or "satellite cells") and their specific microenvironment that dictates stem cells' activation, differentiation, and self-renewal. Critical for the muscle stem cell pool is a fine regulation of chromatin organization and gene expression. Acquiring a lineage-specific 3D genome architecture constitutes a crucial modulator of muscle stem cell function during development, in the adult stage, in physiological and pathological conditions. The context-dependent relationship between genome structure, such as accessibility and chromatin compartmentalization, and their functional effects will be analysed considering the improved 3D epigenome knowledge, underlining the intimate liaison between environmental encounters and epigenetics.

骨骼肌的正常功能对人的一生都至关重要。环境和多种细胞机制之间的重要串联使横纹肌能够成功地发挥作用。值得注意的是,骨骼肌组织会对损伤做出反应,生成一个完全正常的组织。肌肉强大的再生能力依赖于肌肉干细胞(MuSCs或 "卫星细胞")与其特定微环境之间的微妙协调,这种微环境决定了干细胞的活化、分化和自我更新。染色质组织和基因表达的精细调节对肌肉干细胞池至关重要。在发育过程中、在成体阶段、在生理和病理条件下,获得特定品系的三维基因组结构是肌肉干细胞功能的关键调节器。考虑到三维表观基因组知识的改进,我们将分析基因组结构(如可及性和染色质分区)与功能效应之间的环境依赖关系,强调环境遭遇与表观遗传学之间的密切联系。
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引用次数: 0
Effects of the immune system on muscle regeneration. 免疫系统对肌肉再生的影响
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-04-08 DOI: 10.1016/bs.ctdb.2024.01.013
Ping Hu

Muscle regeneration is a complex process orchestrated by multiple steps. Recent findings indicate that inflammatory responses could play central roles in bridging initial muscle injury responses and timely muscle injury reparation. The various types of immune cells and cytokines have crucial roles in muscle regeneration process. In this review, we provide an overview of the functions of acute inflammation in muscle regeneration.

肌肉再生是一个由多个步骤组成的复杂过程。最近的研究结果表明,炎症反应可在最初的肌肉损伤反应和及时的肌肉损伤修复过程中发挥核心作用。各种类型的免疫细胞和细胞因子在肌肉再生过程中起着至关重要的作用。在本综述中,我们将概述急性炎症在肌肉再生中的功能。
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引用次数: 0
Navigating translational control of gene expression in satellite cells. 卫星细胞基因表达的翻译控制导航
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-03-19 DOI: 10.1016/bs.ctdb.2024.02.013
Holly Jiogo, Colin Crist

Satellite cells, named for their satellite position around the sarcolemma of the myofibre, are responsible for skeletal muscle regeneration. Satellite cells normally reside in a quiescent state, but rapidly activate the myogenic program and the cell cycle in response to injury. Translational control of gene expression has emerged as an important regulator of satellite cell activity. Quiescent satellite cells maintain low levels of protein synthesis and selectively translate specific mRNAs to conserve limited energy. Activated satellite cells rapidly restore global protein synthesis to meet the demands of proliferating myogenic progenitors that participate in muscle repair. We propose a model by which translational control enables rapid protein level changes in response to injury-induced environmental shifts, serving as both a brake mechanism during quiescence and an accelerator for injury response. In this Chapter, we navigate the processing, translation and metabolism of newly transcribed mRNAs. We review the modifications of mRNA that occur during mRNA processing in the nucleus of satellite cells, and illustrate how these modifications impact the translation and stability of mRNAs. In the cytoplasm, we review how pathways work in concert to regulate protein synthesis globally, while trans acting microRNAs and RNA binding proteins modify specific mRNA translation within a context of tightly regulated protein synthesis. While navigating translational control of gene expression in satellite cells, this chapter reveals that despite significant progress, the field remains nascent in the broader scope of translational control in cell biology. We propose that future investigations will benefit from incorporating emerging global analyses to study translational control of gene expression in rare satellite cells, and we pose unanswered questions that warrant future exploration.

卫星细胞因其位于肌纤维肌浆周围而得名,负责骨骼肌的再生。卫星细胞通常处于静止状态,但在受伤时会迅速激活肌生成程序和细胞周期。基因表达的转化控制已成为卫星细胞活性的重要调节因素。静止的卫星细胞维持低水平的蛋白质合成,并选择性地翻译特定的mRNA,以保存有限的能量。激活的卫星细胞会迅速恢复全局蛋白质合成,以满足参与肌肉修复的增殖肌原细胞的需求。我们提出了一个模型,通过该模型,翻译控制可实现蛋白质水平的快速变化,以应对损伤诱导的环境变化,既可作为静止期的制动机制,也可作为损伤反应的加速器。在本章中,我们将介绍新转录 mRNA 的加工、翻译和新陈代谢。我们回顾了卫星细胞核中 mRNA 加工过程中发生的 mRNA 修饰,并说明了这些修饰如何影响 mRNA 的翻译和稳定性。在细胞质中,我们回顾了各种途径是如何协同工作以全面调控蛋白质合成的,而反式作用的 microRNA 和 RNA 结合蛋白则在严格调控蛋白质合成的背景下改变特定 mRNA 的翻译。本章在探讨卫星细胞中基因表达的翻译控制的同时,揭示了尽管取得了重大进展,但在细胞生物学翻译控制的更广阔范围内,该领域仍处于起步阶段。我们提出,未来的研究将受益于结合新出现的全局分析来研究罕见卫星细胞中基因表达的翻译控制,我们还提出了值得未来探索的未解之谜。
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引用次数: 0
Decoding the forces that shape muscle stem cell function. 解码塑造肌肉干细胞功能的力量
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-03-05 DOI: 10.1016/bs.ctdb.2024.02.009
Jo Nguyen, Penney M Gilbert

Skeletal muscle is a force-producing organ composed of muscle tissues, connective tissues, blood vessels, and nerves, all working in synergy to enable movement and provide support to the body. While robust biomechanical descriptions of skeletal muscle force production at the body or tissue level exist, little is known about force application on microstructures within the muscles, such as cells. Among various cell types, skeletal muscle stem cells reside in the muscle tissue environment and play a crucial role in driving the self-repair process when muscle damage occurs. Early evidence indicates that the fate and function of skeletal muscle stem cells are controlled by both biophysical and biochemical factors in their microenvironments, but much remains to accomplish in quantitatively describing the biophysical muscle stem cell microenvironment. This book chapter aims to review current knowledge on the influence of biophysical stresses and landscape properties on muscle stem cells in heath, aging, and diseases.

骨骼肌是一种产生力的器官,由肌肉组织、结缔组织、血管和神经组成,它们协同工作以实现运动并为身体提供支撑。虽然目前已有关于骨骼肌在身体或组织层面产生力的可靠生物力学描述,但人们对肌肉内部微结构(如细胞)受力情况知之甚少。在各种细胞类型中,骨骼肌干细胞存在于肌肉组织环境中,在肌肉损伤发生时,在推动自我修复过程中发挥着至关重要的作用。早期证据表明,骨骼肌干细胞的命运和功能受其微环境中的生物物理和生物化学因素控制,但在定量描述肌肉干细胞微环境的生物物理方面仍有许多工作要做。本章旨在回顾目前关于生物物理压力和景观特性对肌肉干细胞在健康、衰老和疾病中的影响的知识。
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引用次数: 0
Making developmental sense of the senses, their origin and function. 从发展的角度认识感官、感官的起源和功能。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-02-12 DOI: 10.1016/bs.ctdb.2024.01.015
Brittany M Edens, Marianne E Bronner

The primary senses-touch, taste, sight, smell, and hearing-connect animals with their environments and with one another. Aside from the eyes, the primary sense organs of vertebrates and the peripheral sensory pathways that relay their inputs arise from two transient stem cell populations: the neural crest and the cranial placodes. In this chapter we consider the senses from historical and cultural perspectives, and discuss the senses as biological faculties. We begin with the embryonic origin of the neural crest and cranial placodes from within the neural plate border of the ectodermal germ layer. Then, we describe the major chemical (i.e. olfactory and gustatory) and mechanical (i.e. vestibulo-auditory and somatosensory) senses, with an emphasis on the developmental interactions between neural crest and cranial placodes that shape their structures and functions.

主要感官--触觉、味觉、视觉、嗅觉和听觉--将动物与环境和彼此联系在一起。除了眼睛之外,脊椎动物的主要感觉器官和传递其输入的外周感觉通路都来自两个瞬时干细胞群:神经嵴和颅底。在本章中,我们将从历史和文化的角度探讨感官,并讨论作为生物能力的感官。我们首先介绍了神经嵴和颅底的胚胎起源,它们来自外胚层的神经板边界。然后,我们描述了主要的化学(即嗅觉和味觉)和机械(即前庭-听觉和躯体感觉)感官,重点是神经嵴和颅骨板块之间形成其结构和功能的发育互动。
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引用次数: 0
Shaping gene expression and its evolution by chromatin architecture and enhancer activity. 通过染色质结构和增强子活性塑造基因表达及其进化。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-02-01 DOI: 10.1016/bs.ctdb.2024.01.001
Jorge Mañes-García, Raquel Marco-Ferreres, Leonardo Beccari

Transcriptional regulation plays a pivotal role in orchestrating the intricate genetic programs governing embryonic development. The expression of developmental genes relies on the combined activity of several cis-regulatory elements (CREs), such as enhancers and silencers, which can be located at long linear distances from the genes that they regulate and that interact with them through establishment of chromatin loops. Mutations affecting their activity or interaction with their target genes can lead to developmental disorders and are thought to have importantly contributed to the evolution of the animal body plan. The income of next-generation-sequencing approaches has allowed identifying over a million of sequences with putative regulatory potential in the human genome. Characterizing their function and establishing gene-CREs maps is essential to decode the logic governing developmental gene expression and is one of the major challenges of the post-genomic era. Chromatin 3D organization plays an essential role in determining how CREs specifically contact their target genes while avoiding deleterious off-target interactions. Our understanding of these aspects has greatly advanced with the income of chromatin conformation capture techniques and fluorescence microscopy approaches to visualize the organization of DNA elements in the nucleus. Here we will summarize relevant aspects of how the interplay between CRE activity and chromatin 3D organization regulates developmental gene expression and how it relates to pathological conditions and the evolution of animal body plan.

转录调控在协调管理胚胎发育的复杂遗传程序中起着关键作用。发育基因的表达依赖于增强子和沉默子等几种顺式调控元件(CREs)的综合活性,这些元件与其调控的基因之间的线性距离很长,并通过建立染色质环路与之相互作用。影响这些基因活性或与其靶基因相互作用的突变可导致发育障碍,并被认为对动物体计划的进化做出了重要贡献。下一代测序方法的收入使得人类基因组中具有潜在调控能力的序列超过一百万个。鉴定它们的功能和建立基因-CREs图谱对于解码发育基因表达的逻辑至关重要,也是后基因组时代的主要挑战之一。染色质三维组织在决定 CREs 如何特异性地接触其靶基因,同时避免有害的脱靶相互作用方面起着至关重要的作用。随着染色质构象捕获技术和荧光显微镜方法的收入,我们对这些方面的理解有了很大的进步,可以直观地看到细胞核中 DNA 元素的组织。在此,我们将总结 CRE 活性与染色质三维组织之间的相互作用如何调控发育基因的表达,以及它与病理条件和动物体计划的进化之间的关系。
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引用次数: 0
Biophysics of morphogenesis in the vertebrate lung. 脊椎动物肺部形态发生的生物物理学。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-06-04 DOI: 10.1016/bs.ctdb.2024.05.003
Samhita P Banavar, Eric W Fowler, Celeste M Nelson

Morphogenesis is a physical process that sculpts the final functional forms of tissues and organs. Remarkably, the lungs of terrestrial vertebrates vary dramatically in form across species, despite providing the same function of transporting oxygen and carbon dioxide. These divergent forms arise from distinct physical processes through which the epithelium of the embryonic lung responds to the mechanical properties of its surrounding mesenchymal microenvironment. Here we compare the physical processes that guide folding of the lung epithelium in mammals, birds, and reptiles, and suggest a conceptual framework that reconciles how conserved molecular signaling generates divergent mechanical forces across these species.

形态发生是雕刻组织和器官最终功能形态的物理过程。值得注意的是,尽管陆生脊椎动物的肺具有输送氧气和二氧化碳的相同功能,但不同物种的肺在形态上却存在巨大差异。胚胎肺上皮对其周围间质微环境的机械特性做出反应的物理过程各不相同,从而产生了这些不同的形态。在这里,我们比较了指导哺乳动物、鸟类和爬行动物肺上皮折叠的物理过程,并提出了一个概念框架,以调和保守的分子信号如何在这些物种中产生不同的机械力。
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引用次数: 0
The organizer and neural induction in birds and mammals. 鸟类和哺乳动物的组织器和神经诱导。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2024-02-21 DOI: 10.1016/bs.ctdb.2024.02.004
Claudio D Stern

In avian and mammalian embryos the "organizer" property associated with neural induction of competent ectoderm into a neural plate and its subsequent patterning into rostro-caudal domains resides at the tip of the primitive streak before neurulation begins, and before a morphological Hensen's node is discernible. The same region and its later derivatives (like the notochord) also have the ability to "dorsalize" the adjacent mesoderm, for example by converting lateral plate mesoderm into paraxial (pre-somitic) mesoderm. Both neural induction and dorsalization of the mesoderm involve inhibition of BMP, and the former also requires other signals. This review surveys the key experiments done to elucidate the functions of the organizer and the mechanisms of neural induction in amniotes. We conclude that the mechanisms of neural induction in amniotes and anamniotes are likely to be largely the same; apparent differences are likely to be due to differences in experimental approaches dictated by embryo topology and other practical constraints. We also discuss the relationships between "neural induction" assessed by grafts of the organizer and normal neural plate development, as well as how neural induction relates to the generation of neuronal cells from embryonic and other stem cells in vitro.

在禽类和哺乳动物胚胎中,与神经诱导有能力的外胚层形成神经板并随后将其模式化为喙-尾状域相关的 "组织者 "特性位于原始条纹的顶端,此时神经形成尚未开始,形态学上的亨森节点也尚未显现。同一区域及其后来的衍生物(如脊索)还具有 "背化 "邻近中胚层的能力,例如将侧板中胚层转化为轴旁(前绒毛)中胚层。神经诱导和中胚层背化都需要抑制 BMP,前者还需要其他信号。本综述概述了为阐明羊膜动物组织器的功能和神经诱导机制而进行的主要实验。我们的结论是,羊膜动物和非羊膜动物的神经诱导机制可能大致相同;表面上的差异可能是由于胚胎拓扑结构和其他实际限制所决定的实验方法不同造成的。我们还讨论了组织器移植评估的 "神经诱导 "与正常神经板发育之间的关系,以及神经诱导与体外胚胎干细胞和其他干细胞生成神经细胞之间的关系。
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引用次数: 0
The organizer: What it meant, and still means, to developmental biology. 组织者:它对发育生物学意味着什么,现在仍然意味着什么。
2区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-01-01 Epub Date: 2023-12-20 DOI: 10.1016/bs.ctdb.2023.12.001
Jonathan Slack

This article is about how the famous organizer experiment has been perceived since it was first published in 1924. The experiment involves the production of a secondary embryo under the influence of a graft of a dorsal lip from an amphibian gastrula to a host embryo. The early experiments of Spemann and his school gave rise to a view that the whole early amphibian embryo was "indifferent" in terms of determination, except for a special region called "the organizer". This was viewed mainly as an agent of neural induction, also having the ability to generate an anteroposterior body pattern. Early biochemical efforts to isolate a factor emitted by the organizer were not successful but culminated in the definition of "neuralizing (N)" and "mesodermalizing (M)" factors present in a wide variety of animal tissues. By the 1950s this view became crystallized as a "two gradient" model involving the N and M factors, which explained the anteroposterior patterning effect. In the 1970s, the phenomenon of mesoderm induction was characterized as a process occurring before the commencement of gastrulation. Reinvestigation of the organizer effect using lineage labels gave rise to a more precise definition of the sequence of events. Since the 1980s, modern research using the tools of molecular biology, combined with microsurgery, has explained most of the processes involved. The organizer graft should now be seen as an experiment which involves multiple interactions: dorsoventral polarization following fertilization, mesoderm induction, the dorsalizing signal responsible for neuralization and dorsoventral patterning of the mesoderm, and additional factors responsible for anteroposterior patterning.

本文介绍的是著名的组织者实验自 1924 年首次发表以来人们对它的看法。该实验涉及在两栖动物胃体背唇移植到宿主胚胎的影响下产生次级胚胎。斯佩曼和他的学派的早期实验产生了一种观点,即除了一个被称为 "组织者 "的特殊区域外,整个两栖类早期胚胎在决定性方面 "无动于衷"。这主要被视为神经诱导的媒介,同时也具有产生前胸体型的能力。为分离组织器释放的因子而进行的早期生化研究并不成功,但最终确定了存在于各种动物组织中的 "神经化因子(N)"和 "中胚层化因子(M)"。到了 20 世纪 50 年代,这一观点被具体化为涉及 N 因子和 M 因子的 "双梯度 "模型,从而解释了前胸模式效应。20 世纪 70 年代,中胚层诱导现象被定性为在胃形成开始之前发生的过程。使用品系标签对组织者效应进行的再研究使人们对事件发生的顺序有了更精确的定义。自 20 世纪 80 年代以来,现代研究利用分子生物学工具,结合显微外科手术,解释了大部分相关过程。组织者移植现在应被视为一个涉及多种相互作用的实验:受精后的背腹极化、中胚层诱导、负责中胚层神经化和背腹模式化的背化信号以及负责前胸模式化的其他因素。
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引用次数: 0
期刊
Current Topics in Developmental Biology
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