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A new perspective on the molecular dating of the brown trout complex with an extended phylogeographic information on the species in Serbia 棕鳟复合体的分子定年的新观点与扩展系统地理信息的物种在塞尔维亚
IF 2.2 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-05-25 DOI: 10.1163/18759866-bja10046
T. Veličković, A. Snoj, V. Simić, R. Šanda, J. Vukić, Dovilė Barcytė, D. Stanković, S. Marić
To elucidate the historical biogeography of a species, the patterns of population divergence must be understood, and the evolutionary history of the species must be accurately known. For brown trout (Salmo trutta complex), estimating divergence times remains a challenge due to the lack of well-defined time calibration points and insufficient phylogeographic coverage in previous studies. The present work aims to improve molecular dating of mitochondrial control region sequences by using a multicalibration framework based on the latest paleogeological evidence for dating the origin of Lake Ohrid and two available Salmo fossils, including the overlooked Salmo immigratus. Our results clearly show that, contrary to common belief, the major divisions within the brown trout occurred in the Late Pliocene, not the Pleistocene. The Pliocene origin suggests that the brown trout lineages did not form because of geo(hydro)morphological changes during glaciation cycles but may be the result of orogeny and drainage evolution. In addition, increased sampling, particularly in Serbia, led to the identification of a new haplogroup (da-int) occupying an intermediate position with respect to da-es and da-bs haplogroups. While the control region can delineate brown trout lineages, its phylogenetic resolution is limited, so even extensive sampling could not further resolve the lineage level polytomies.
为了阐明一个物种的历史生物地理学,必须了解种群分化的模式,并且必须准确地了解该物种的进化史。对于褐鳟(Salmo trutta复合体)来说,由于缺乏明确的时间校准点和先前研究中的系统地理学覆盖范围不足,估计分化时间仍然是一个挑战。目前的工作旨在通过使用基于最新古地理证据的多校准框架来改进线粒体控制区序列的分子定年,以确定奥赫里德湖的起源和两个可用的萨尔莫化石的年代,包括被忽视的萨尔莫移民化石。我们的研究结果清楚地表明,与人们普遍认为的相反,褐鳟的主要分裂发生在上新世晚期,而不是更新世。上新世的起源表明,褐鳟谱系的形成并不是因为冰川作用周期期间的地质(水文)形态变化,而是造山运动和排水进化的结果。此外,采样的增加,特别是在塞尔维亚,导致发现了一个新的单倍群(da-int),它相对于da-es和da-bs单倍群处于中间位置。虽然控制区可以描绘褐鳟谱系,但其系统发育分辨率有限,因此即使是广泛的采样也无法进一步解析谱系水平的多胞体。
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引用次数: 0
Morphological variation during post-embryonic development in the centipede Lithobius melanops: traditional and geometric morphometrics approaches 黑蜈蚣胚胎后发育过程中的形态学变化:传统和几何形态计量学方法
IF 2.2 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-05-10 DOI: 10.1163/18759866-bja10044
D. Stojanović, Vukica D. Vujić, Z. Jovanović, Jelena Milovanović, B. Dudić, B. Ilić, S. Makarov
Two modes of post-embryonic development, hemianamorphosis and epimorphosis, show a distinct pattern among extant centipede (Chilopoda) orders. Although studies on post-embryonic development in Lithobiomorpha date back to the 19th and the 20th century, many ambiguities referring to nomenclature of their post-embryonic stages still exist. In this paper coherent terminology of the post-embryonic stages in Lithobius melanops, which could be applied to other lithobiomorphs, is proposed. Additionally, morphological variability of selected morphological traits was analyzed using traditional and geometric morphometric approaches. We recognized five anamorphic (anamorph 0 to 4) and five epimorphic stages (agenitalis, immaturus, praematurus, pseudomaturus and maturus). Measurement and count of certain morphometric characters, detailed description of genital appendages, shape and size variation of the forcipular apparatus, the cephalic capsule and the terminal legs are given. Moreover, for the purpose of geometric morphometric analyses we separated specimens of epimorphic stages into three groups (agenitalis-, praematurus- and maturus-like) based on the level of differentiation of genital appendages. Sexual size dimorphism of the forcipular apparatus was observed only in the praematurus group. Also, significant inter-group forcipular size and shape differences are found between some tested groups. Furthermore, significant differences in size and shape were recorded for the cephalic capsule between all groups. Finally, significant size differences in ultimate legs are present between all epimorphic groups, while shape differences were detected only between agenitalis and maturus groups. Our results contribute to overcoming terminological disparities and provide guidelines for distinguishing stages via discrete and continuous changes during post-embryonic development of the anamorphic centipede.
在现存的蜈蚣目中,胚胎后发育的半形态和差形态两种模式表现出不同的模式。尽管对石藻胚胎后发育的研究可以追溯到19世纪和20世纪,但关于其胚胎后阶段的命名仍然存在许多歧义。本文提出了黑石斑虫胚胎后阶段的连贯术语,可用于其他石斑虫形态。此外,使用传统和几何形态计量方法分析了所选形态性状的形态变异性。我们识别了五个变形阶段(变形0到4)和五个浅形态阶段(无尾目、无尾目,前尾目、拟成熟目和成熟目)。对某些形态计量特征的测量和计数,生殖器附件的详细描述,对口器、头囊和末端腿的形状和大小变化进行了描述。此外,为了进行几何形态计量学分析,我们根据生殖器附属物的分化水平,将浅形态阶段的标本分为三组(似无颌龙、似颌龙和似成熟龙)。前掌器的性别大小二型性仅在掌龙组中观察到。此外,在一些受试组之间,发现了显著的组间枕骨大小和形状差异。此外,各组头包膜的大小和形状存在显著差异。最后,所有浅形态组的最终腿部存在显著的大小差异,而只有发育不全组和成熟组的形状存在差异。我们的研究结果有助于克服术语上的差异,并为通过变形蜈蚣胚胎后发育过程中的离散和连续变化来区分阶段提供指导。
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引用次数: 0
One step closer but still far from solving the puzzle – The phylogeny of marine associated mites (Acari, Oribatida, Ameronothroidea) inferred from morphological and molecular genetic data 从形态学和分子遗传学数据推断出海洋相关螨(Acari, Oribatida, Ameronothroidea)的系统发育
IF 2.2 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-05-05 DOI: 10.1163/18759866-bja10043
T. Pfingstl, I. Bardel-Kahr, K. Schliep
Marine associated oribatid mites belong mainly to the Ameronothroidea which represent a very small percentage of all Oribatida. Over the last decades the systematics and evolutionary history of this group has been discussed controversially and still there is no consensus concerning several issues. The extreme marine environment may have resulted in parallel morphologies complicating the classification and estimation of phylogeny based on discrete morphological traits. In the present study, we performed a molecular genetic study using a mitochondrial and two nuclear markers to infer the phylogeny of this group. Additionally, we reconstructed the phylogeny of Ameronothroidea based on morphological data using different algorithms. Both methods resulted in largely congruent topologies and highlight the following important points: the Ameronothroidea represent a paraphyletic assemblage; the Podacaridae are a distinct family and should be excluded from Ameronothridae; the Fortuyniidae, Selenoribatidae and Tegeocranellidae constitute a monophyletic lineage; and certain genera of Selenoribatidae need a revision. These results demonstrate that the classification of Ameronothroidea and certain positions within this group need to be thoroughly reconsidered and revised. The present study also shows that phylogenetic estimates based on coded morphological data can be a very helpful tool for verifying and supporting molecular phylogenies.
海洋相关奥里巴斯螨主要属于Ameronothroidea,在所有奥里巴斯亚目中所占比例很小。在过去的几十年里,人们对该类群的系统学和进化史进行了有争议的讨论,但在几个问题上仍然没有达成共识。极端的海洋环境可能导致了平行形态,使基于离散形态特征的系统发育分类和估计变得复杂。在本研究中,我们使用线粒体和两个核标记进行了分子遗传学研究,以推断该群体的系统发育。此外,我们使用不同的算法,根据形态学数据重建了无齿龙的系统发育。这两种方法都产生了很大程度上一致的拓扑结构,并强调了以下要点:Ameronothroidea代表了一个副系集合;足螨科是一个独特的科,应被排除在无尾虫科之外;Fortuynidae、Selenoribatidae和Tegeoranellidae构成一个单系谱系;某些Selenoribatidae属需要修订。这些结果表明,Ameronothroidea的分类和该组中的某些位置需要彻底重新考虑和修订。本研究还表明,基于编码形态学数据的系统发育估计可以成为验证和支持分子系统发育的一个非常有用的工具。
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引用次数: 1
Polka-dotted treasures: Revising a clade of ascidian- and bivalve-associated shrimps (Caridea: Palaemonidae) 波尔卡点缀的宝藏:重温与海鞘和双壳类相关的虾的分支(Caridea:Palaemonidae)
IF 2.2 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-05-02 DOI: 10.1163/18759866-bja10042
Werner de Gier, C. Fransen
Most marine shrimp species of the family Palaemonidae are characterized by symbiotic associations with hosts that belong to a wide range of invertebrate phyla. One clade of related endosymbiotic species has evolved to live inside the branchial chambers of ascidians and the mantle cavities of bivalve molluscs. The phylogeny of this clade (comprising 15 bivalve-associated species in the genera Anchistus, Neoanchistus, and Paranchistus, and three species of ascidian-associated species in the genus Dasella) is the topic of the present study, which is based on both morphological and molecular data. A concatenated phylogeny reconstruction was built by using the markers coi and 16S. With the help of a total evidence approach (with a scored morphological datamatrix), species could be added for which no molecular data were available. An ancestral character state analysis was performed to detect host switches. In contrast to another endosymbiotic clade, the ancestral host state was found to be slightly in favour of bivalves. The phylogenetic relevance of morphological features is discussed with a focus on a tympanal organ located in the major chelipeds of some bivalve-associated shrimp species. This little-known anatomical structure is illustrated by sem and µCT scans. Its possible function is discussed. In the phylogeny reconstructions, both Anchistus and Paranchistus were found to be polyphyletic. They were reclassified to obtain a more natural classification: Anchistus custoides and Anchistus custos were transferred to the resurrected genus Ensiger. Paranchistus liui, P. nobilii, P. pycnodontae, and P. spondylis were transferred to Polkamenes gen. nov. Anchistus pectinis and P. ornatus were transferred to Tympanicheles gen. nov. Per genus, a key to the species is provided.
Palaemonidae科的大多数海虾物种的特征是与宿主共生,宿主属于广泛的无脊椎动物门。相关内共生物种的一个分支已经进化到生活在海鞘的鳃室内和双壳类软体动物的地幔腔中。该分支的系统发育是本研究的主题,该研究基于形态学和分子数据。利用coi和16S标记构建了连锁系统发育重建。在全面证据方法的帮助下(使用评分的形态学数据矩阵),可以添加没有分子数据的物种。执行祖先字符状态分析以检测主机交换机。与另一个内共生分支相反,祖先的宿主状态被发现稍微有利于双壳类。讨论了形态特征的系统发育相关性,重点讨论了一些双壳类相关虾种主要螯肢中的鼓室管器官。扫描电镜和µCT扫描显示了这种鲜为人知的解剖结构。讨论了它的可能作用。在系统发育重建中,Anchistus和Paranchistus都是多系的。它们被重新分类,以获得一个更自然的分类:库斯Anchistus custoides和库斯Anchstus custos被转移到复活的Ensiger属。Paranchistus liui、P.nobilii、P.pycnodontae和P.spindis被转移到Polkamenes gen.nov.Anchistus果胶和P.ornatus被转移到Tympanichles gen.nov..每个属都提供了该物种的钥匙。
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引用次数: 0
Phylogenetics and taxonomy of the scleractinian coral family Euphylliidae 软体珊瑚科的系统发育与分类
IF 2.2 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-03-13 DOI: 10.1163/18759866-bja10041
R. Arrigoni, J. Stolarski, T. Terraneo, B. Hoeksema, M. Berumen, C. Payri, S. Montano, F. Benzoni
The family Euphylliidae consists of reef-building zooxanthellate scleractinian corals distributed across the Indo-Pacific. Seven extant genera comprising a total of 22 valid species are currently recognised. Recent studies have re-organised the taxonomy of the family at the genus level based on molecular and morphological data, including a comprehensive revision of Euphyllia and the resurrection of Fimbriaphyllia. Here, three mitochondrial loci (coi, 12S rRNA, and 16S rRNA) were sequenced and morphological examinations were conducted at three scales (macro/micromorphology and microstructure of the skeleton, and polyp morphology) to study the phylogeny and taxonomy of Euphylliidae. We analysed a total of 11 valid species collected from seven Indo-Pacific localities. The monotypic genus Coeloseris, currently in Agariciidae, was also investigated since previous molecular data suggested a close relationship with the Euphylliidae. Molecular and morphological phylogenetic trees were broadly concordant in the definition of genus-level clades. All analysed genera, i.e., Ctenella, Euphyllia, Fimbriaphyllia, Galaxea, and Gyrosmilia, were reciprocally monophyletic based on molecular results. Coeloseris was nested within the family and, therefore, is formally moved into Euphylliidae. Updated morphological diagnoses are provided for each investigated genus. This study further demonstrated that a phylogenetic classification of scleractinian corals can be achieved by applying a combined morpho-molecular approach. Finally, we encourage phylogenetic and taxonomic studies of the euphylliid taxa not yet analysed molecularly, such as the monotypic genera Montigyra and Simplastrea.
Euphyllidae科由分布在印度洋-太平洋的造礁动物学家黄绿珊瑚组成。目前共确认了7个现存属,共22个有效物种。最近的研究基于分子和形态学数据在属水平上重新组织了该科的分类学,包括对Euphellia的全面修订和FimbriaPhylia的复活。本文对三个线粒体基因座(coi、12S rRNA和16S rRNA)进行了测序,并在三个尺度(骨骼的宏观/微观形态和微观结构,以及息肉形态)上进行了形态学检查,以研究木虱科的系统发育和分类学。我们分析了从七个印度-太平洋地区收集的11个有效物种。由于先前的分子数据表明Coeloseris与Eupholicidae有密切关系,因此目前在琼脂科中的单型Coeloseri属也进行了研究。分子和形态系统发育树在属级分支的定义上大致一致。根据分子结果,所有被分析的属,即Ctenella属、Euphellia属、Fimbriaphylia属、Galaxea属和Gyrosmilia属,都是相互单系的。Coeloseris被嵌套在该科中,因此,被正式转移到Euphillidae中。为每个调查属提供了最新的形态学诊断。这项研究进一步证明,巩膜珊瑚的系统发育分类可以通过应用形态-分子组合方法来实现。最后,我们鼓励对尚未进行分子分析的胡杨属分类群进行系统发育和分类学研究,如单型属Montigyra和Simplastrea。
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引用次数: 1
Effects of background color on pigmentation, morphological traits, and behavior in the European tree frog (Hyla arborea, Hylidae, Anura) tadpoles 背景颜色对欧洲树蛙(Hyla arborea, Hylidae, Anura)蝌蚪色素沉着、形态特征和行为的影响
IF 2.2 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-02-20 DOI: 10.1163/18759866-bja10040
M. Mirč, T. Vukov, A. Kijanović, N. T. Kolarov
Amphibian tadpoles are capable of avoiding threats (predators, uv radiation, etc.) through changes in coloration, behavior, and shape. In this paper, we tested how quickly European tree frog (Hyla arborea) tadpoles can change body pigmentation to achieve crypsis and whether color change is reversible. Additionally, we tested how different environmental background colorations affect the body length, shape, and ontogenetic trajectories of tadpoles. We also analyzed if tadpoles can relate to their coloration and choose the appropriate background to enhance crypsis. For this purpose, we reared tadpoles on white and black backgrounds for 36 days. Halfway through the experiment, half of the tadpoles from each treatment were placed on the alternative background. Our results suggest that H. arborea tadpoles are capable of rapidly responding to color changes in their environment, however, color-matching with the white background is poor. These quick color changes are reversible. Rearing in different background coloration and rapid color changes do not affect tadpoles’ length variation but affect tadpoles’ shape. Tadpoles introduced to the white background at the start of the experiment developed deeper tail fins and more pronounced snouts. We also found that H. arborea tadpoles actively choose an appropriate background to achieve maximum crypsis. This study represents the basis for the future analysis of adaptive coloration in tadpoles as it has a very complex function in anurans.
两栖类蝌蚪能够通过改变颜色、行为和形状来躲避威胁(捕食者、紫外线辐射等)。在本文中,我们测试了欧洲树蛙(Hyla arborea)蝌蚪改变身体色素沉着达到隐化的速度有多快,以及颜色变化是否可逆。此外,我们测试了不同的环境背景颜色如何影响蝌蚪的体长、形状和个体发生轨迹。我们还分析了蝌蚪是否能与它们的颜色联系起来,并选择合适的背景来增强隐性。为此,我们在黑白背景上饲养蝌蚪36天。实验进行到一半时,每组中有一半的蝌蚪被放置在不同的背景上。结果表明,树蛙蝌蚪对环境颜色变化有较快的反应能力,但对白色背景的配色能力较差。这些快速变色是可逆的。不同背景颜色和快速颜色变化对蝌蚪体长变化没有影响,但对蝌蚪外形有影响。实验开始时,把蝌蚪放在白色背景中,它们的尾鳍更深,鼻子更明显。我们还发现树蛙会主动选择合适的背景来达到最大程度的隐密。该研究为蝌蚪适应性着色的进一步分析奠定了基础,因为它在无尾动物中具有非常复杂的功能。
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引用次数: 3
Insights into a putative polychaete-gastropod symbiosis from a newly identified annelid worm that predates upon Conus ermineus eggs 从一种新发现的环节动物蠕虫中了解一种假定的多毛动物-腹足动物共生关系,这种蠕虫以圆锥虫卵为食
IF 2.2 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-02-17 DOI: 10.1163/18759866-bja10038
Matías L Giglio, Paula Flórez Salcedo, M. Watkins, B. Olivera
Cone snails are a diverse group of venomous marine gastropods that have dioecious reproduction and internal fertilization resulting in egg deposition inside capsules. However, the observational studies conducted on their spawning behaviour and egg masses have left many open questions. Here, we analyse egg masses from a specimen of Conus ermineus kept in captivity for over 17 years. We present the first detailed description of the morphological features of the egg capsules and eggs (e.g., egg shape, size, and colour). The analysis of these capsules led us to the identification of a dinophilid worm (Polychaeta: Dinophilidae) living inside the snail egg capsules and likely feeding upon the snail eggs. This is the first report of such behaviours among dinophilids. Our analysis suggests that these worms belong to a new species, here described as Dimorphilus oophagus sp. nov., supported by both molecular and morphological data. Finally, we discuss the possibility of a putative symbiotic relationship between the worm and the snail.
锥螺是一种多样的有毒海洋腹足类动物,它们具有雌雄异株生殖和内部受精,导致卵在囊内沉积。然而,对它们的产卵行为和卵量进行的观察研究留下了许多悬而未决的问题。在这里,我们分析了一个被圈养了17年以上的圆锥猴标本的卵团。我们首次详细描述了卵囊和卵的形态特征(例如,卵的形状、大小和颜色)。对这些胶囊的分析使我们确定了一种生活在蜗牛卵胶囊内的亲恐龙蠕虫(多毛纲:亲恐龙科),并可能以蜗牛卵为食。这是关于这种行为的首次报道。我们的分析表明,这些蠕虫属于一个新的物种,这里被描述为Dimorphilus oophagus sp. nov.,分子和形态数据都支持。最后,我们讨论了蠕虫和蜗牛之间假定的共生关系的可能性。
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引用次数: 0
Ronald A. Jenner, Ancestors in Evolutionary Biology – Linear Thinking about Branching 罗纳德·詹纳,进化生物学的祖先——关于分支的线性思考
IF 2.2 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-02-16 DOI: 10.1163/18759866-bja10039
A. Minelli, R. Vonk
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引用次数: 0
Front matter 前页
2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-01-23 DOI: 10.1163/18759866-92010000
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引用次数: 0
Integrative taxonomy of the Merodon aberrans (Diptera, Syrphidae) species group: distribution patterns and description of three new species 畸变美齿兽(双翅目,蚜蝇科)种群的综合分类:三个新种的分布模式和描述
IF 2.2 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2022-11-03 DOI: 10.1163/18759866-bja10037
A. Vujić, S. Radenković, N. K. Tubić, L. Likov, Grigory Popov, S. Rojo, M. Miličić
In this paper, we revise the Merodon aberrans species group of the genus Merodon Meigen, 1803 (Diptera: Syrphidae), providing morphological diagnoses and descriptions, molecular data for three species, as well as an illustrated key and a discussion of the different taxonomic characters used. We also discuss distribution patterns for this species group. The results revealed that the M. aberrans group is composed of five described species (M. aberrans Egger, 1860, M. brevis Paramonov, 1926, M. flavitibius Paramonov, 1926, M. hamifer Sack, 1913, and M. warnckei Hurkmans, 1993) and three new ones, namely M. hermonensis Vujić, Radenković et Likov sp. nov., M. petiolatus Vujić, Radenković et Rojo sp. nov., and M. retectus Vujić, Radenković et Likov sp. nov. Following a detailed study of the type material in different entomological collections, the status of several species is revised, one new synonym is proposed (subspecies M. aberrans isperensis Hurkmans, 1993 as junior synonym of M. flavitibius), lectotypes are designated for M. kneri Mik, 1867 and M. flavitibius, and paralectotypes are designated for M. hamifer and M. flavitibius. Seven out of eight species from the M. aberrans group are distributed in the Asian continent, namely all Caucasian countries, Turkey and Iran, confirming the notion about high diversity of Merodon species in these regions, but also highlighting the need for a systematic faunistic research.
在本文中,我们修改了梅根梅齿龙属的梅齿龙物种群,1803(Diptera:Syrphidae),提供了三个物种的形态学诊断和描述、分子数据,以及一个图文并茂的关键字和对所用不同分类特征的讨论。我们还讨论了该物种群的分布模式。结果表明,M.aberans群由五个已描述的物种组成(M.aberans-Egger,1860,M.brevis-Paramonov,1926,M.flavitibius Paramonov,1926,M.hamifer-Sack,1913和M.warnckei-Hurkmans,1993)和三个新物种,即M.hermonesis Vujić、Radenkovićet Likov sp.nov,Radenkovićet Likov sp.nov.在对不同昆虫学收藏中的模式材料进行详细研究后,对几个物种的状态进行了修订,提出了一个新的同义词(M.aberrans isperensis Hurkmans亚种,1993年为M.flavitibius的初级同义词),为M.kneri-Mik和M.flavitbius指定了选型,1867年,并为M.hamifer和M.flavitibius指定了副胞外型。来自M.aberans群的八个物种中有七个分布在亚洲大陆,即所有高加索国家、土耳其和伊朗,这证实了这些地区Merodon物种高度多样性的观点,但也强调了系统动物区系研究的必要性。
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引用次数: 1
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Contributions to Zoology
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