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[Parkinson's disease: from genetics to targeted therapies]. [帕金森氏症:从遗传学到靶向治疗]。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2025-02-13 DOI: 10.5802/crbiol.174
Guillaume Cogan, Alexis Brice

Parkinson’s disease (PD) is a multifactorial disorder involving various biological pathways. However, it is more accurate not to define PD as a unique entity, but rather as a mixture of several diseases with similar phenotypes. Attempts to classify subtypes of PD based on the clinical phenotype or biomarkers were tried. Nonetheless, for a subset of individuals, the classification based on the implied gene appears to be the most practical. Although the SNCA gene was the first identified in rare patients, pathogenic variants in GBA1 and LRRK2 are the most common genetic causes or risk factors of PD, and PRKN is the most frequent gene of autosomal recessive PD. Patients with pathogenic variants in SNCA, GBA1, LRRK2 or PRKN show various clinical, anatomopathological and biochemical aspects. Therefore, these four genes associated to PD are of particular interest for the development of targeted therapies. This fact is reinforced by the reality that current approaches are only symptomatic, and no curative treatment is available today. A number of clinical trials aiming to slow or stop disease progression are running, based on the gene involved. In this review, we will discuss the therapeutic approaches targeting SNCA, GBA1, LRRK2 and PRKN.

帕金森病(PD)是一种涉及多种生物学途径的多因素疾病。然而,将帕金森病定义为一种独特的实体更准确,而是将其定义为具有相似表型的几种疾病的混合物。尝试根据临床表型或生物标志物对PD亚型进行分类。尽管如此,对于一小部分个体来说,基于隐含基因的分类似乎是最实用的。虽然SNCA基因是在罕见患者中首次发现的,但GBA1和LRRK2的致病变异是PD最常见的遗传原因或危险因素,PRKN是常染色体隐性遗传PD最常见的基因。SNCA、GBA1、LRRK2或PRKN致病变异的患者表现出不同的临床、解剖病理和生化方面的特征。因此,这四个与PD相关的基因对靶向治疗的发展特别感兴趣。目前的方法只是对症治疗,目前尚无治愈性治疗,这一现实进一步加强了这一事实。基于相关基因,一些旨在减缓或阻止疾病进展的临床试验正在进行中。在这篇综述中,我们将讨论针对SNCA、GBA1、LRRK2和PRKN的治疗方法。
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引用次数: 0
The Anthropocene and the biodiversity crisis: an eco-evolutionary perspective. 人类世与生物多样性危机:生态进化的视角。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2025-01-09 DOI: 10.5802/crbiol.172
Philippe Jarne

A major facet of the Anthropocene is global change, such as climate change, caused by human activities, which drastically affect biodiversity with all-scale declines and homogenization of biotas. This crisis does not only affect the ecological dynamics of biodiversity, but also its evolutionary dynamics, including genetic diversity, an aspect that is generally neglected. My tenet is therefore to consider biodiversity dynamics from an eco-evolutionary perspective, i.e. explicitly accounting for the possibility of rapid evolution and its feedback on ecological processes and the environment. I represent the impact of the various avatars of global change in a temporal perspective, from pre-industrial time to the near future, allowing to visualize their dynamics and to set desired values that should not be trespassed for a given time (e.g., +2 °C for 50 years from now). After presenting the impact of various stressors (e.g., climate change) on biodiversity, this representation is used to heuristically show the relevance of an eco-evolutionary perspective: (i) to analyze how biodiversity will respond to the stressors, for example by seeking out more suitable conditions or adapting to new conditions; (ii) to serve in predictive exercises to envision future dynamics (decades to centuries) under stressor impact; (iii) to propose nature-based solutions to the crisis. Significant obstacles stand in the way of the development of such an approach, in particular the general lack of interest in intraspecific diversity, and perhaps more generally a lack of understanding that, we, humans, are only a modest part of biodiversity.

人类世的一个主要方面是由人类活动引起的全球变化,如气候变化,这极大地影响了生物多样性,导致生物群落的全尺度下降和同质化。这一危机不仅影响生物多样性的生态动态,而且影响其进化动态,包括遗传多样性,这是一个通常被忽视的方面。因此,我的宗旨是从生态进化的角度来考虑生物多样性的动态,即明确地说明快速进化的可能性及其对生态过程和环境的反馈。我代表了从工业化前到不久的将来,从时间角度来看全球变化的各种化身的影响,允许可视化它们的动态并设置在给定时间内不应被侵犯的期望值(例如,从现在起50年内+2°C)。在介绍了各种压力源(如气候变化)对生物多样性的影响之后,该表示用于启发式地显示生态进化视角的相关性:(i)分析生物多样性将如何响应压力源,例如通过寻找更合适的条件或适应新的条件;(ii)在压力影响下,预测未来动态(数十年至数百年);(三)提出基于自然的危机解决方案。发展这种方法的道路上存在着重大障碍,特别是对种内多样性普遍缺乏兴趣,也许更普遍的是缺乏对我们人类只是生物多样性的一小部分的理解。
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引用次数: 0
Axon regeneration: an issue of translation. 轴突再生:一个翻译问题。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-12-12 DOI: 10.5802/crbiol.169
Julia Schaeffer, Stephane Belin

In the mammalian central nervous system (CNS), adult neurons fail to regenerate spontaneously upon axon injury, which leads to a permanent and irreversible loss of neuronal functions. For more than 15 years, much effort was invested to unlock axon regrowth programs based on extensive transcriptomic characterization. However, it is now well described that mRNA and protein levels correlate only partially in cells, and that the transcription process (from DNA to mRNA) may not directly reflect protein expression. Conversely, the translation process (from mRNA to protein) provides an additional layer of gene regulation. This aspect has been overlooked in CNS regeneration. In this review, we discuss the limitations of transcriptomic approaches to promote CNS regeneration and we provide the rationale to investigate translational regulation in this context, and notably the regulatory role of the translational complex. Finally, we summarize our and others’ recent findings showing how variations in the translational complex composition regulate selective (mRNA-specific) translation, thereby controlling CNS axon regrowth.

在哺乳动物中枢神经系统(CNS)中,成年神经元在轴突损伤后不能自发再生,从而导致神经元功能永久性和不可逆的丧失。在超过15年的时间里,人们投入了大量的精力来解开基于广泛转录组学表征的轴突再生程序。然而,现在已经很好地描述了mRNA和蛋白质水平在细胞中仅部分相关,并且转录过程(从DNA到mRNA)可能不能直接反映蛋白质表达。相反,翻译过程(从mRNA到蛋白质)提供了一个额外的基因调控层。这方面在中枢神经系统再生中一直被忽视。在这篇综述中,我们讨论了转录组学方法促进中枢神经系统再生的局限性,并提供了在这种情况下研究翻译调控的基本原理,特别是翻译复合体的调控作用。最后,我们总结了我们和其他人最近的发现,这些发现表明翻译复合体组成的变化如何调节选择性(mrna特异性)翻译,从而控制中枢神经系统轴突的再生。
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引用次数: 0
ORCHAMP: an observation network for monitoring biodiversity and ecosystem functioning across space and time in mountainous regions. ORCHAMP:用于监测山区生物多样性和生态系统功能的跨时空观测网络。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-11-25 DOI: 10.5802/crbiol.165
Wilfried Thuiller, Amélie Saillard, Sylvain Abdulhak, Vincent Augé, Carole Birck, Richard Bonet, Philippe Choler, Anne Delestrade, Georges Kunstler, Marie-France Leccia, Bertrand Lienard, Jérome Poulenard, Jean-Gabriel Valay, Arthur Bayle, Nicolas Bonfanti, Lenka Brousset, Léa Bizard, Irene Calderón-Sanou, Cédric Dentant, Camille Desjonquères, Ludovic Gielly, Maya Guéguen, Frédéric Guiter, Mickael Hedde, Eric Hustache, Norine Kedhim, Pierre Lapenu, Nicolas Le Guillarme, Lise Marchal, Chloé Mahieu, Gabrielle Martin, Camille Martinez-Almoyna, Vincent Miele, Jérôme Murienne, Yoan Paillet, Maxime Rome, Julien Renaud

Recent climate and land use change, and pollution have led to concerning alterations in biodiversity and ecosystem functions, jeopardizing nature’s contributions to people. Mountainous regions are not immune to these threats, experiencing the impacts of global warming, increased recreational activities, and changes in agricultural practices. Leveraging the natural elevational gradients of mountain environments, the ORCHAMP program was established in 2016 as a comprehensive initiative to monitor, understand, and predict the repercussions of environmental changes on biodiversity and associated ecosystem functions in the French Alps and Pyrenees.Beyond its monitoring role, ORCHAMP has catalyzed the development of tools for data integration, statistical analyses, visualization, and AI-based automated data processing and predictions. Through a combination of traditional sampling methods (e.g., botanical surveys) and cutting-edge technologies (remote-sensing, environmental DNA, video, and acoustic sensors), the program offers a holistic approach to understanding how biodiversity faces environmental changes. By showcasing examples and key results, this paper provides an overview of ORCHAMP’s advancements and outlines potential future directions. The broad inclusion of diverse monitoring techniques and data treatments positions ORCHAMP as a pioneering effort, paving the way for long-term insights into biodiversity dynamics—a crucial step toward effective conservation strategies.

最近的气候和土地利用变化以及污染导致了生物多样性和生态系统功能的巨大变化,损害了自然对人类的贡献。山区也不能幸免于这些威胁,受到全球变暖、娱乐活动增加和农业做法变化的影响。ORCHAMP项目成立于2016年,旨在监测、了解和预测环境变化对法国阿尔卑斯山和比利牛斯山脉生物多样性和相关生态系统功能的影响,利用山地环境的自然海拔梯度。除了监测作用,ORCHAMP还促进了数据集成、统计分析、可视化和基于人工智能的自动数据处理和预测工具的发展。通过结合传统的采样方法(如植物调查)和尖端技术(遥感、环境DNA、视频和声学传感器),该计划提供了一个全面的方法来了解生物多样性如何面对环境变化。通过展示示例和关键结果,本文概述了ORCHAMP的进展并概述了潜在的未来方向。ORCHAMP广泛采用了多种监测技术和数据处理方法,使其成为一项开创性的努力,为深入了解生物多样性动态铺平了道路,这是迈向有效保护战略的关键一步。
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引用次数: 0
[Biosecurity and epidemiological surveillance]. [生物安全和流行病监测]。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-11-13 DOI: 10.5802/crbiol.166
Alain-Jacques Valleron

Biosecurity is a word including, in French, two concepts which are differently expressed in the English literature: the biosafety (to prevent accidental releases of infectious agents, for example, in research laboratories) and the biosecurity (to prevent the voluntary dispersion of infectious agents by bioterrorists, for example). Up to now, bioterrorism using a biological weapon has been very rare. Epidemiological surveillance is frequently seen as an efficient tool to achieve a better biosafety, and increase biosecurity. However, biosecurity requires an alert system. Traditional surveillance, which was developed to help to design the health policies, lacks the sensitivity and rapid response delay necessary for alert. Biology brings new opportunities for alert and surveillance. Examples are the monitoring of sewer systems and the development of CRISPR tools for detection of biological agents. A new problem is that these tools can be used out of the research laboratories, because they are relatively cheap and easy to develop. Finally, whatever the method used to identify quickly a new hazard, the key problem is the “preparedness” to identify and connect quickly the biomedical experts able to provide the best response to this hazard.

生物安全这个词在法语中包括两个概念,而这两个概念在英语文献中有不同的表达:生物安全(例如,在研究实验室中防止传染性病原体的意外释放)和生物安全(例如,防止生物恐怖分子自愿传播传染性病原体)。到目前为止,使用生物武器的生物恐怖主义非常罕见。流行病学监测经常被视为实现更好的生物安全和增加生物安全的有效工具。然而,生物安全需要一个警报系统。传统的监测是为了帮助制定卫生政策而开发的,缺乏警报所需的敏感性和快速反应延迟。生物学为警戒和监视带来了新的机会。例如监测下水道系统和开发用于检测生物制剂的CRISPR工具。一个新的问题是,这些工具可以在研究实验室之外使用,因为它们相对便宜且易于开发。最后,无论采用何种方法快速识别新的危害,关键问题是“准备”,以便快速识别并联系能够对这种危害提供最佳反应的生物医学专家。
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引用次数: 0
[Nanomedicines for the treatment of serious diseases and dual research]. [用于治疗严重疾病和双重研究的纳米药物]。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-11-13 DOI: 10.5802/crbiol.168
Patrick Couvreur

The use of nanotechnologies for the encapsulation of pharmacologically active molecules (nanomedicines) has enhanced the delivery of these molecules within the body after administration. By releasing the active ingredient at the level of pathological cells and tissues, these nanocarriers help reduce toxicity while improving therapeutic efficacy. They also protect fragile molecules from rapid metabolization and can promote their intracellular penetration. Nanomedicines have made significant advances in various therapeutic areas such as oncology, infectious diseases, and several neurological disorders. They have also contributed to groundbreaking discoveries, including the introduction of the first mRNA vaccine (against COVID-19), and have improved certain imaging and diagnostic techniques, too. Depending on the country and therapeutic indications, between 40 to 60 nanomedicines are currently on the market, with over a hundred in clinical trials. This review aims to describe and discuss the characteristics and functionalities of the different generations of nanocarriers, from their inception to the present day, discussing the prospects they offer for the production of therapeutic proteins, for facilitating gene editing (CRISPR/Cas9), and for enabling immune checkpoint blockade in oncology. The potential of extracellular vesicles and exosomes as drug carriers is also explored. These advances compel researchers to consider the dual risks, both conscious and unconscious, that they may pose.

纳米技术用于药理学活性分子(纳米药物)的包封,增强了这些分子在给药后在体内的传递。通过在病理细胞和组织水平释放活性成分,这些纳米载体有助于降低毒性,同时提高治疗效果。它们还可以保护脆弱分子免受快速代谢,并促进其在细胞内渗透。纳米药物在肿瘤、传染病和几种神经系统疾病等各种治疗领域取得了重大进展。他们还为突破性的发现做出了贡献,包括引入首个mRNA疫苗(针对COVID-19),并改进了某些成像和诊断技术。根据国家和治疗适应症的不同,目前市场上有40到60种纳米药物,其中100多种正在进行临床试验。本综述旨在描述和讨论不同代纳米载体的特性和功能,从它们的开始到现在,讨论它们为生产治疗性蛋白、促进基因编辑(CRISPR/Cas9)和在肿瘤学中实现免疫检查点阻断提供的前景。细胞外囊泡和外泌体作为药物载体的潜力也进行了探讨。这些进步迫使研究人员考虑它们可能带来的双重风险,包括有意识的和无意识的。
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引用次数: 0
Generating neurons in the embryonic and adult brain: compared principles and mechanisms. 胚胎和成人大脑中神经元的生成:原理和机制比较。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-11-13 DOI: 10.5802/crbiol.167
Mathilde Chouly, Laure Bally-Cuif

Neurogenesis is a lifelong process, generating neurons in the right amount, time and place and with the correct identity to permit the growth, function, plasticity and repair of the nervous system, notably the brain. Neurogenesis originates from neural progenitor cells (NPs), endowed with the capacity to divide, renew to maintain the progenitor population, or commit to engage in the neurogenesis process. In the adult brain, these progenitors are classically called neural stem cells (NSCs). We review here the commonalities and differences between NPs and NSCs, in their cellular and molecular attributes but also in their potential, regulators and lineage, in the embryonic and adult brains. Our comparison is based on the two most studied model systems, namely the telencephalon of the zebrafish and mouse. We also discuss how the population of embryonic NPs gives rise to adult NSCs, and outstanding questions pertaining to this transition.

神经发生是一个终生的过程,在适当的数量、时间和地点产生具有正确身份的神经元,以允许神经系统(特别是大脑)的生长、功能、可塑性和修复。神经发生起源于神经祖细胞(neural progenitor cells, NPs),它们被赋予了分裂、更新以维持祖细胞群的能力,或者致力于参与神经发生过程。在成人大脑中,这些祖细胞通常被称为神经干细胞(NSCs)。我们在此回顾NPs和NSCs之间的共性和差异,在它们的细胞和分子属性,以及它们在胚胎和成人大脑中的潜力,调节因子和谱系。我们的比较是基于两个研究最多的模型系统,即斑马鱼和老鼠的端脑。我们还讨论了胚胎NPs群体如何产生成人NSCs,以及与此过渡有关的悬而未决的问题。
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引用次数: 0
[Biodiversity : a need for clarification]. [生物多样性:需要澄清]。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-11-07 DOI: 10.5802/crbiol.163
Guillaume Lecointre

Ever since the term “biodiversity” was first defined, it has been used in a mixed way, referring on the one hand to the characterisation of living organisms (which is the domain of systematics), and on the other hand to their functional interactions (which are the domain of ecology). This ambiguity has led to the terms biodiversity and ecosystem being used almost synonymously, a mistake that is both epistemologically and politically damaging. To clear up this confusion, the term biodiversity should be reserved for what we observe when we characterise or discover “what there is” (a task for systematics) at the three infra-specific, specific and supra-specific levels, and the term ecosystem should be reserved for what we observe when we are interested in the functional interactions (“what it does”, a task for ecology) between living organisms, and between the latter and the abiotic environment.

自从“生物多样性”一词被首次定义以来,它就以一种混合的方式被使用,一方面指生物体的特征(这是系统学的领域),另一方面指它们的功能相互作用(这是生态学的领域)。这种模糊性导致生物多样性和生态系统这两个术语几乎被同义使用,这是一个在认识论和政治上都具有破坏性的错误。为了澄清这种混淆,“生物多样性”一词应该保留给我们观察到的东西,当我们在三个次特异性、特异性和超特异性水平上描述或发现“有什么”(系统学的任务)时,而“生态系统”一词应该保留给我们观察到的东西,当我们对生物有机体之间以及后者与非生物环境之间的功能相互作用(“它做什么”,生态学的任务)感兴趣时。
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引用次数: 0
Oncogenic processes: a neglected parameter in the evolutionary ecology of animals. 致癌过程:动物进化生态学中一个被忽视的参数。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-11-07 DOI: 10.5802/crbiol.159
Frédéric Thomas, Klara Asselin, Nick MacDonald, Lionel Brazier, Jordan Meliani, Beata Ujvari, Antoine Marie Dujon

Cancer is a biological process that emerged at the end of the Precambrian era with the rise of multicellular organisms. Traditionally, cancer has been viewed primarily as a disease relevant to human and domesticated animal health, attracting attention mainly from oncologists. In recent years, however, the community of ecologists and evolutionary biologists has recognized the pivotal role of cancer-related issues in the evolutionary paths of various species, influencing multiple facets of their biology. It has become evident that overlooking these issues is untenable for a comprehensive understanding of species evolution and ecosystem functioning. In this article, we highlight some significant advancements in this field, also underscoring the pressing need to consider reciprocal interactions not only between cancer cells and their hosts but also with all entities comprising the holobiont. This reflection gains particular relevance as ecosystems face increasing pollution from mutagenic substances, resulting in a resurgence of cancer cases in wildlife.

癌症是前寒武纪末期随着多细胞生物的兴起而出现的一种生物过程。传统上,癌症主要被视为一种与人类和家畜健康有关的疾病,主要引起肿瘤学家的注意。然而,近年来,生态学家和进化生物学家已经认识到癌症相关问题在各种物种进化路径中的关键作用,影响其生物学的多个方面。很明显,忽视这些问题对于全面了解物种进化和生态系统功能是站不住脚的。在这篇文章中,我们重点介绍了这一领域的一些重大进展,同时也强调了迫切需要考虑不仅是癌细胞与其宿主之间的相互作用,而且是与构成全息生物的所有实体之间的相互作用。随着生态系统面临越来越多的致突变物质污染,导致野生动物癌症病例的再次出现,这一反思具有特别的意义。
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引用次数: 0
The milpa, from Mesoamerica to present days, a multicropping traditional agricultural system serving agroecology. 从中美洲到现在的密尔帕,是一种服务于农业生态学的多作物传统农业系统。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-11-06 DOI: 10.5802/crbiol.164
Noa Vazeux-Blumental, Domenica Manicacci, Maud Tenaillon

The association of maize (Zea mays ssp. mays), common bean (Phaseolus vulgaris), and squash (Cucurbita ssp.) within the milpa represents the most emblematic multi-cropping subsistence system of Mesoamerica. This system was likely established in the Guerrero-Jalisco area in southwestern Central Mexico shortly after—or perhaps even before—the domestication of the three taxa. Its success relies on several factors: complementarity of nutritional intakes, resilience to biotic and abiotic constraints, and the mobilization of positive interactions between the three taxa, enabling the system to be productive under input-limited conditions. Higher yields compared to sole-cropping have frequently been described and attributed to the complementarity between the aerial and root systems of the different taxa of the milpa, as well as to direct and indirect facilitation processes involving root exudates, bacterial symbioses, and the mycorrhizal network. In Europe, while practiced until recently, the milpa has gradually been abandoned in favor of maize sole-cropping, except in some isolated regions (such as Transylvania) where this traditional agricultural system has persisted. The question of whether varieties of the three taxa used in multi-cropping systems were co-introduced to Europe at the time of the discovery of the Americas, as opposed to being re-associated later in Europe, remains open. It is important to note that maize usage differed: maize of flint type is coarsely ground for the preparation of polenta in Europe, while in Mesoamerica, tropical varieties are soaked in alkaline solution to improve nutritional quality before being finely ground to make tortilla dough. Recently, maize-bean intercropping has been reintroduced into modern European agricultural systems. However, the use of elite varieties and chemical inputs in conventional conducts prevents full exploitation of positive interactions between species. We argue here that milpa has an important role to play in the agroecological transition. In this context, we propose avenues for the selection of varieties that promote synergies between species and discuss the constraints linked to its mechanization.

玉米协会(Zea mays ssp)。milpa内的mays), common bean (Phaseolus vulgaris)和squash (Cucurbita ssp.)代表了中美洲最具代表性的多作物生存系统。这个系统很可能是在这三种分类群驯化之后不久,甚至可能在驯化之前,在墨西哥西南部的格雷罗-哈利斯科地区建立起来的。它的成功取决于几个因素:营养摄入的互补性,对生物和非生物限制的适应能力,以及调动三个分类群之间的积极相互作用,使该系统能够在投入有限的条件下生产。与单作相比,更高的产量经常被描述并归因于milpa不同分类群的地上系统和根系之间的互补性,以及涉及根渗出物,细菌共生和菌根网络的直接和间接促进过程。在欧洲,虽然直到最近还在实行,但米尔帕已经逐渐被放弃,取而代之的是玉米单作,除了在一些孤立的地区(如特兰西瓦尼亚),这种传统的农业系统仍在继续。在发现美洲大陆时,这三种多作物分类群的品种是否被共同引入欧洲,而不是后来在欧洲重新联系起来,这个问题仍然没有定论。值得注意的是,玉米的用途有所不同:在欧洲,燧石型玉米被粗磨,用于制备玉米粥,而在中美洲,热带品种的玉米被浸泡在碱性溶液中,以提高营养质量,然后被细磨,制成玉米饼面团。最近,玉米-豆类间作已重新引入现代欧洲农业系统。然而,在常规行为中使用优良品种和化学投入阻碍了物种之间积极相互作用的充分利用。我们认为,米尔帕在农业生态转型中发挥着重要作用。在此背景下,我们提出了促进物种间协同作用的品种选择途径,并讨论了与其机械化相关的制约因素。
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引用次数: 0
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