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Species abundance, urn models, and neutrality. 物种丰度、瓮模型和中性。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-10-02 DOI: 10.5802/crbiol.162
Jerome Chave

The neutral theory of biodiversity and biogeography has stimulated much research in community ecology. Here, exact results are used to apply neutral model predictions to large regional samples. Three complementary neutral models are presented: the Ewens canonical neutral model, a model of subdivided ecological communities, and a “diversity begets diversity” neutral model. For all three models, an exact sampling formula is provided, and a new R package neutr, is presented. This package is used to fit species abundances from regional inventories of tropical forest trees in the Amazon, tropical Africa and Southeast Asia. It is shown that the neutral models fit well empirical data for all but the few most abundant species (from 6 to 40 depending on the continent). When the parameter θ is taken as an index or regional diversity, the Amazonia and Southeast Asia emerge with similar regional diversities (θ = 654 for Amazonia, versus θ = 726 for Southeast Asia), with a less diverse tropical African tree flora (θ = 219). The model infers 10,141 tree species with at least 50 individuals in Amazonia, 3477 in tropical Africa and 9915 in Southeast Asia. The spatially subdivided neutral model provides clear evidence for a spatial substructure in all three regional floras. These results show how neutral models are useful to explore regional patterns of species abundance and to provide insights about regional species pools.

生物多样性和生物地理学的中性理论刺激了群落生态学的研究。在这里,精确的结果用于将中性模型预测应用于大型区域样本。提出了三种互补的中性模型:eens规范中性模型、细分生态群落模型和“多样性产生多样性”中性模型。对于这三种模型,给出了精确的抽样公式,并给出了一个新的R包中性。该包用于拟合亚马逊、热带非洲和东南亚热带森林树木区域清单中的物种丰度。结果表明,中性模型可以很好地拟合除少数最丰富的物种(根据大陆的不同,从6到40种)以外的所有物种的经验数据。当以参数θ作为区域多样性指数时,亚马逊地区和东南亚地区的区域多样性相似(亚马逊地区为θ = 654,东南亚地区为θ = 726),而热带非洲地区的树木区系多样性较低(θ = 219)。该模型推断出亚马逊地区有10141种树种,至少有50个个体,热带非洲有3477种树种,东南亚有9915种树种。空间细分中性模型为三个区域植物区系的空间亚结构提供了明确的证据。这些结果表明,中性模型在探索物种丰富度的区域模式和提供关于区域物种库的见解方面是非常有用的。
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引用次数: 0
Incomplete divisions between sister germline cells require Usp8 function. 姐妹生殖细胞之间的不完全分裂需要 Usp8 的功能。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-09-30 DOI: 10.5802/crbiol.161
Juliette Mathieu, Jean-René Huynh

Cytokinetic abscission is the final step of cell division, resulting in two separate daughter cells. While abscission is typically complete across most cell types, germline cells, which produce sexual gametes, do not finish cytokinesis, maintaining connections between sister cells. These connections are essential for sharing cytoplasm as they differentiate into oocyte and sperm. First, we outline the molecular events of cytokinesis during both complete and delayed abscission, highlighting the role of the ESCRT-III proteins. We then focus on recent discoveries that reveal the molecular mechanisms blocking abscission in Drosophila germline cells. The enzyme Usp8 was identified as vital for ensuring incomplete cytokinesis through the regulation of ESCRT-III ubiquitination and localization. Finally, we explore how the processes of incomplete cytokinesis could hold evolutionary importance, suggesting additional studies into choanoflagellates to comprehend the origins of multicellularity.

细胞动力学脱落是细胞分裂的最后一步,产生两个独立的子细胞。虽然大多数细胞类型的分离通常是完整的,但产生性配子的生殖系细胞不会完成细胞质分裂,维持姐妹细胞之间的连接。当它们分化为卵母细胞和精子时,这些连接对于共享细胞质是必不可少的。首先,我们概述了完全脱落和延迟脱落过程中细胞分裂的分子事件,强调了ESCRT-III蛋白的作用。然后,我们集中在最近的发现,揭示分子机制阻断脱落在果蝇生殖系细胞。Usp8酶通过调控ESCRT-III的泛素化和定位,对确保不完全细胞分裂至关重要。最后,我们探讨了不完全细胞质分裂的过程如何具有进化重要性,建议对鞭藻进行进一步的研究,以了解多细胞的起源。
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引用次数: 0
[Evolution of plant mating systems in the face of global change]. [面对全球变化植物交配系统的进化]。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-09-23 DOI: 10.5802/crbiol.160
Pierre-Olivier Cheptou

Beyond species extinction, it is likely that global change modifies selection regimes in natural populations. Whereas the classical Darwinian paradigm considers evolution as a slow process, it is now accepted that populations can evolve rapidly, in a few dozen generations. Plant-pollinator relationship is a central relationship in terrestrial ecosystems and the current pollinator decline can potentially disrupt this relationship. In this paper, we explore the possibility that reproductive systems in plants evolve in the face of pollinator decline. Using the case of a recent resurrection ecology study in Viola arvensis, the field pansy, we show that the evolution of a self-fertilization syndrome, and thus the breakdown of the plant-pollinator interaction, is in progress. Beyond the species itself, the evolution of reproductive regimes in plants involves relationships between species (pollinators and higher trophic levels). Thus, this example illustrates that global change is likely to affect biodiversity at different scales: from populations (Darwinian evolution) to ecosystem functions (relationships between species). This study shows that evolutionary processes modify the functioning of ecological systems and, where applicable, the related ecosystem services.

除了物种灭绝之外,全球变化很可能改变了自然种群的选择机制。尽管经典的达尔文范式认为进化是一个缓慢的过程,但现在人们普遍认为种群可以在几十代内迅速进化。植物与传粉者的关系是陆地生态系统的核心关系,目前传粉者的减少可能会破坏这种关系。在本文中,我们探讨了植物生殖系统在面对传粉者减少时进化的可能性。以紫罗兰(Viola arvensis)(一种三色堇)最近的复活生态学研究为例,我们表明,自花受精综合征的进化,以及植物与传粉者相互作用的破坏,正在进行中。除了物种本身,植物生殖制度的进化还涉及物种之间的关系(传粉者和更高营养水平)。因此,这个例子说明了全球变化可能在不同的尺度上影响生物多样性:从种群(达尔文进化论)到生态系统功能(物种之间的关系)。这项研究表明,进化过程改变了生态系统的功能,并在适用的情况下改变了相关的生态系统服务。
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引用次数: 0
The dangerous biology of pathogenic germs. 病原菌的危险生物学
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-09-19 DOI: 10.5802/crbiol.157
Patrick Berche

The convergence of biotechnologies with other disciplines, including computer science and Artificial Intelligence (AI), may make it possible to carry out dangerous genetic manipulations on pathogenic germs, as the gain-of-function experiments exacerbating virulence, as those carried out on myxoviruses and coronaviruses. Moreover, it is now possible to chemically synthesise any microorganism from in silico sequences, including the most dangerous viruses (poxviruses, Ebola, etc.), whose sequences are accessible. It might even be possible to use AI to design new germs that could be used as biological weapons.

生物技术与包括计算机科学和人工智能在内的其他学科的融合,可能使对致病菌进行危险的遗传操作成为可能,因为对黏液病毒和冠状病毒进行的功能获得实验会加剧毒力。此外,现在可以从硅序列中化学合成任何微生物,包括最危险的病毒(痘病毒、埃博拉病毒等),它们的序列是可以获得的。甚至有可能使用人工智能来设计可以用作生物武器的新细菌。
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引用次数: 0
Shedding light on the unseen: how live imaging of translation could unlock new insights in developmental biology. 揭示看不见的世界:翻译的实时成像如何开启发育生物学的新视角。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-09-11 DOI: 10.5802/crbiol.158
Jeremy Dufourt, Maelle Bellec

Recent advances in live imaging technologies have refined our understanding of protein synthesis in living cells. Among the various approaches to live imaging of translation, this perspective highlights the use of antibody-based nascent peptide detection, a method that enables visualization of single-molecule translation in vivo. We examine how these advances improve our understanding of biological processes, particularly in developing organisms. In addition, we discuss technological advances in this field and suggest further improvements. Finally, we review some examples of how this method could lead to future scientific breakthroughs in the study of translation and its regulation in whole organisms.

实时成像技术的最新进展使我们对活细胞中的蛋白质合成有了更深入的了解。在翻译实时成像的各种方法中,这种观点强调了基于抗体的新生肽检测的使用,这种方法可以实现体内单分子翻译的可视化。我们研究这些进步如何提高我们对生物过程的理解,特别是在发育中的生物体。此外,我们还讨论了该领域的技术进展,并提出了进一步改进的建议。最后,我们回顾了一些例子,说明这种方法如何在整个生物体的翻译及其调控研究中取得未来的科学突破。
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引用次数: 0
Tribute to Roger Guillemin, a pioneer in neuroendocrinology (1924-2024), Nobel Prize in Physiology or Medicine. 向诺贝尔生理学或医学奖获得者、神经内分泌学先驱罗杰-吉列明(1924-2024 年)致敬。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-08-27 DOI: 10.5802/crbiol.156
Christiane Mougin, Jean Rossier, Bertrand Bloch

Roger Guillemin discovered and characterized the hypothalamic factors that control anterior pituitary functions. He consequently demonstrated that these brain peptides regulate a large number of major body activities through neuroendocrine mechanisms. This especially include growth, fertility and reproduction, endocrine gland functions and stress. These seminal works paved the way to major applications in many fields of physiology and medicine for diagnosis, pharmacology and therapy, far beyond the initial discovery and properties of these molecules, including in cancerology, immunology, inflammation, drug addiction and behavior.

罗杰-吉列明发现并描述了控制垂体前叶功能的下丘脑因子。因此,他证明了这些脑肽通过神经内分泌机制调节人体的大量主要活动。其中尤其包括生长、生育和生殖、内分泌腺功能和压力。这些开创性工作为这些分子在生理学和医学的诊断、药理学和治疗等许多领域的重大应用铺平了道路,远远超出了这些分子最初的发现和特性,包括在癌症学、免疫学、炎症、药物成瘾和行为学等领域的应用。
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引用次数: 0
[Mitohormesis: a key driver of the therapy resistance in cancer cells]. [丝裂细胞生成:癌细胞耐药性的关键驱动因素】。]
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-08-22 DOI: 10.5802/crbiol.154
Emeline Boët, Estelle Saland, Sarah Skuli, Emmanuel Griessinger, Jean-Emmanuel Sarry

A large body of literature highlights the importance of energy metabolism in the response of haematological malignancies to therapy. In this review, we are particularly interested in acute myeloid leukaemia, where mitochondrial metabolism plays a key role in response and resistance to treatment. We describe the new concept of mitohormesis in the response to therapy-induced stress and in the initiation of relapse in this disease.

大量文献强调了能量代谢对血液恶性肿瘤治疗反应的重要性。在这篇综述中,我们对急性髓性白血病尤其感兴趣,因为线粒体代谢在治疗反应和抗药性中起着关键作用。我们描述了线粒体生成在应对治疗诱导的压力和该病复发过程中的新概念。
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引用次数: 0
Exploring the maternal inheritance transmitted by the oocyte to its progeny. 探索卵母细胞传给后代的母性遗传。
IF 0.7 4区 生物学 Q4 BIOLOGY Pub Date : 2024-06-18 DOI: 10.5802/crbiol.155
Marie-Hélène Verlhac

Fertility is declining worldwide and many couples are turning towards assisted reproductive technologies (ART) to conceive babies. Organisms that propagate via sexual reproduction often come from the fusion between two gametes, an oocyte and a sperm, whose qualities seem to be decreasing in the human species. Interestingly, while the sperm mostly transmits its haploid genome, the oocyte transmits not only its haploid set of chromosomes but also its huge cytoplasm to its progeny. This is what can be defined as the maternal inheritance composed of chromosomes, organelles, lipids, metabolites, proteins and RNAs. To decipher the decline in oocyte quality, it is essential to explore the nature of the maternal inheritance, and therefore study the last stages of murine oogenesis, namely the end of oocyte growth followed by the two meiotic divisions. These divisions are extremely asymmetric in terms of the size of the daughter cells, allowing to preserve the maternal inheritance accumulated during oocyte growth within these huge cells to support early embryo development. Studies performed in Marie-Hélène Verlhac's lab have allowed to discover the unprecedented impact of original acto-myosin based mechanisms in the constitution as well as the preservation of this maternal inheritance and the consequences when these processes go awry.

全世界的生育率都在下降,许多夫妇开始采用辅助生殖技术(ART)来怀孕。通过有性生殖繁殖的生物通常来自两个配子(卵细胞和精子)的融合,而人类的配子质量似乎正在下降。有趣的是,精子主要传递其单倍体基因组,而卵细胞不仅传递其单倍体染色体组,还将其巨大的细胞质传递给后代。这就是由染色体、细胞器、脂质、代谢物、蛋白质和 RNA 组成的母体遗传。要破解卵母细胞质量下降的问题,就必须探索母体遗传的本质,因此要研究小鼠卵子发生的最后阶段,即卵母细胞生长结束后的两次减数分裂。就子细胞的大小而言,这两次分裂是极不对称的,这样就能在这些巨大的细胞中保留卵母细胞生长过程中积累的母性遗传,以支持早期胚胎的发育。Marie-Hélène Verlhac 实验室的研究发现,以肌动蛋白为基础的原始机制对母体遗传的构成和保存产生了前所未有的影响,并发现了这些过程出现问题时的后果。
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引用次数: 0
Molecular complexity of quantitative immunity in plants: from QTL mapping to functional and systems biology. 植物定量免疫的分子复杂性:从 QTL 图谱到功能和系统生物学。
IF 0.6 4区 生物学 Q4 BIOLOGY Pub Date : 2024-05-21 DOI: 10.5802/crbiol.153
Carine Chauveau, Dominique Roby

In nature, plants defend themselves against pathogen attack by activating an arsenal of defense mechanisms. During the last decades, work mainly focused on the understanding of qualitative disease resistance mediated by a few genes conferring an almost complete resistance, while quantitative disease resistance (QDR) remains poorly understood despite the fact that it represents the predominant and more durable form of resistance in natural populations and crops. Here, we review our past and present work on the dissection of the complex mechanisms underlying QDR in Arabidopsis thaliana. The strategies, main steps and challenges of our studies related to one atypical QDR gene, RKS1 (Resistance related KinaSe 1), are presented. First, from genetic analyses by QTL (Quantitative Trait Locus) mapping and GWAs (Genome Wide Association studies), the identification, cloning and functional analysis of this gene have been used as a starting point for the exploration of the multiple and coordinated pathways acting together to mount the QDR response dependent on RKS1. Identification of RKS1 protein interactors and complexes was a first step, systems biology and reconstruction of protein networks were then used to decipher the molecular roadmap to the immune responses controlled by RKS1. Finally, exploration of the potential impact of key components of the RKS1-dependent gene network on leaf microbiota offers interesting and challenging perspectives to decipher how the plant immune systems interact with the microbial communities' systems.

在自然界中,植物通过启动一系列防御机制来抵御病原体的侵袭。在过去几十年中,研究工作主要集中在了解由少数几个基因介导的几乎完全抗病的定性抗病性,而定量抗病性(QDR)尽管代表了自然种群和作物中最主要和更持久的抗病形式,但人们对它的了解仍然很少。在此,我们回顾了过去和现在对拟南芥 QDR 复杂机制的研究工作。本文介绍了我们对一个非典型 QDR 基因 RKS1(Resistance related KinaSe 1)的研究策略、主要步骤和挑战。首先,通过 QTL(定量性状基因座)图谱和 GWA(全基因组关联研究)的遗传分析,对该基因进行了鉴定、克隆和功能分析,并以此为起点,探索了依赖 RKS1 启动 QDR 响应的多种协调途径。鉴定 RKS1 蛋白相互作用者和复合物是第一步,然后利用系统生物学和蛋白质网络重建来解读 RKS1 所控制的免疫反应的分子路线图。最后,探索 RKS1 依赖性基因网络的关键成分对叶片微生物群的潜在影响,为破译植物免疫系统如何与微生物群落系统相互作用提供了有趣而富有挑战性的视角。
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引用次数: 0
[What Charles Darwin owed to Joseph Banks]. [查尔斯-达尔文欠约瑟夫-班克斯的】。]
IF 2 4区 生物学 Q4 BIOLOGY Pub Date : 2024-05-13 DOI: 10.5802/crbiol.152
Hervé Le Guyader

History has remembered Joseph Banks as the explorer-botanist of the first voyage of James Cook. Yet, shortly after his return, he got elected president of the Royal Society and, for over 40 years, he then played in Great Britain an eminent role in reorganizing natural sciences and advocating an "economic botany". He actively intervened in acclimatization and varietal selection of plants and animals in Great Britain as in the future English colonies. Thus he built an intellectual environment which will promote the emergence of Charles Darwin's thoughts.

在历史的记忆中,约瑟夫-班克斯是詹姆斯-库克第一次航行的探险家兼植物学家。然而,回国后不久,他就当选为英国皇家学会会长,此后的 40 多年里,他在英国的自然科学重组和 "经济植物学 "倡导方面发挥了突出作用。他在英国和未来的英国殖民地积极开展动植物的适应性改造和品种选育工作。因此,他营造了一个促进查尔斯-达尔文思想产生的知识环境。
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引用次数: 0
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Comptes Rendus Biologies
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