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Proteomic analysis of mitochondria-ER contacts reveals key proteins involved in metabolic regulation in hepatocytes. 线粒体-内质网接触的蛋白质组学分析揭示了参与肝细胞代谢调节的关键蛋白。
IF 8.2 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-02-02 DOI: 10.1186/s12964-026-02679-5
Hang Yang, Xingyue Wang, Caixia Wang, Xiang Zhang, Bingjie Kong, Rong Bai, Xiaojun Xu, Zonghong Li, Tao Xu, Maoge Zhou
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引用次数: 0
Chemoproteomics-based profiling elucidates the antimalarial effects of amodiaquine through disruption of glycolysis process in Plasmodium falciparum. 基于化学蛋白质组学的分析阐明了阿莫地喹通过破坏恶性疟原虫糖酵解过程的抗疟作用。
IF 8.2 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-31 DOI: 10.1186/s12964-026-02663-z
Jianyou Wang, Chen Wang, Ruishen Zhuge, Huan Tang, Fei Xia, Ying Zhang, Junzhe Zhang, Cui Liu, Jiao Wu, Xiao Chen, Peng Gao, Jigang Wang
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引用次数: 0
NLRP3-mediated epithelial pyroptosis involved in airway hyperresponsiveness in combined eosinophilic and neutrophilic asthma. nlrp3介导的上皮细胞焦亡参与嗜酸性和嗜中性哮喘合并气道高反应性。
IF 8.2 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-31 DOI: 10.1186/s12964-026-02706-5
Min Zhang, Lei Zhao, Yishu Xue, Hang Su, Yanmei Lin, Yilin Pan, Jifei Wu, Lei Han, Yan Zhou, Wuping Bao
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引用次数: 0
Annexin A2-dependent extracellular vesicle proteome modulates pre-metastatic stromal fibroblast behavior in triple-negative breast cancer. 膜联蛋白a2依赖性细胞外囊泡蛋白质组调节三阴性乳腺癌转移前间质成纤维细胞行为。
IF 8.2 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-31 DOI: 10.1186/s12964-026-02708-3
Rucha Trivedi, Payal Ranade, Jamboor K Vishwanatha

Background: Triple-negative breast cancer (TNBC) is an aggressive subclass of breast cancer with limited treatment options and a strong tendency to metastasize to the lung. Tumor-derived extracellular vesicles (EVs) are key mediators of stromal reprogramming in the pre-metastatic niche. Annexin A2 (AnxA2) is overexpressed in TNBC and linked to signal transduction, cytoskeletal remodeling, and poor prognosis, but its role in shaping EV cargo composition and consequent stromal behavior remains unclear.

Methods: EVs were isolated from the conditioned media of MDA-MB-4175 (LM2) TNBC cells with stable AnxA2 knockdown and control cells using differential ultracentrifugation. EVs were characterized and validated using nanoparticle tracking analysis, Western blotting, and cryo-electron microscopy. EV proteomes were profiled using quantitative proteomics, followed by bioinformatic analyses. Functional and pathway enrichment was performed to identify proteome signatures altered by AnxA2 depletion. The internalization of EVs by recipient lung fibroblasts (MRC-5 and WI-38 cells) was assessed using confocal imaging, and EV-mediated effects on fibroblast behavior were evaluated through migration assays and immunoblotting for proteins associated with fibroblast activation.

Results: AnxA2 knockdown reduced pro-metastatic cellular properties in LM2 cells. EVs from AnxA2-deficient cells displayed reduced abundance of proteins involved in cytoskeletal regulation, adhesion, and vesicle trafficking, with enrichment of immune-related proteins. Pathway analyses predicted reduced motility and vesicle trafficking signaling. PKH26 labeled EVs derived from AnxA2 expressing cells exhibited increased internalization by lung fibroblasts as detected by confocal imaging. Functionally, AnxA2-enriched EV-mediated interactions enhanced fibroblast migration, proliferation, and activation marker expression compared with AnxA2-deficient EVs, consistent with the predicted proteomic changes.

Conclusions: AnxA2 emerges as a regulator of the protein composition of TNBC-derived EVs, enhancing EV-mediated interactions with lung fibroblasts and modulating fibroblast motility and activation, linking tumor cell protein expression to stromal remodeling in the lung microenvironment. This work establishes a framework suggestive of an EV cargo-driven mechanism through which EVs derived from AnxA2-expressing cells may influence lung-specific metastatic colonization in TNBC and highlights the importance of evaluating EV-mediated communication in cancer progression.

背景:三阴性乳腺癌(TNBC)是一种侵袭性的乳腺癌亚类,治疗选择有限,且有强烈的肺转移倾向。肿瘤来源的细胞外囊泡(EVs)是转移前生态位基质重编程的关键介质。Annexin A2 (AnxA2)在TNBC中过表达,与信号转导、细胞骨架重塑和不良预后有关,但其在形成EV货物成分和随后的基质行为中的作用尚不清楚。方法:采用差速超离心法从稳定敲除AnxA2的MDA-MB-4175 (LM2) TNBC细胞和对照细胞的条件培养基中分离ev。利用纳米颗粒跟踪分析、Western blotting和低温电子显微镜对ev进行了表征和验证。利用定量蛋白质组学分析EV蛋白质组,然后进行生物信息学分析。通过功能富集和途径富集来鉴定因AnxA2缺失而改变的蛋白质组特征。通过共聚焦成像评估受体肺成纤维细胞(MRC-5和WI-38细胞)对ev的内化,并通过迁移试验和与成纤维细胞激活相关的蛋白质的免疫印迹来评估ev对成纤维细胞行为的介导作用。结果:下调AnxA2可降低LM2细胞的促转移性。来自anxa2缺陷细胞的ev显示,参与细胞骨架调节、粘附和囊泡运输的蛋白丰度降低,免疫相关蛋白富集。通路分析预测运动和囊泡运输信号减少。共聚焦成像检测到,来自表达AnxA2细胞的PKH26标记的EVs被肺成纤维细胞内化增加。功能上,与缺乏anxa2的ev相比,富含anxa2的ev介导的相互作用增强了成纤维细胞的迁移、增殖和激活标记物的表达,与预测的蛋白质组学变化一致。结论:AnxA2作为tnbc来源的ev蛋白组成的调节因子,增强ev介导的与肺成纤维细胞的相互作用,调节成纤维细胞的运动和激活,将肿瘤细胞蛋白表达与肺微环境中的基质重塑联系起来。这项工作建立了一个提示EV货物驱动机制的框架,通过该机制,来自表达anxa2的细胞的EV可能影响TNBC中肺特异性转移定植,并强调了评估EV介导的交流在癌症进展中的重要性。
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引用次数: 0
RB1-I680T mutation potentiates tumor growth and chemotherapy sensitivity in non-small cell lung cancer via derepressing E2F1 transcription. RB1-I680T突变通过抑制E2F1转录增强非小细胞肺癌的肿瘤生长和化疗敏感性。
IF 8.2 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-31 DOI: 10.1186/s12964-026-02695-5
Yilin Zhu, Fengyuan Gao, Yu Liu, Jinfu Wang, Fanrong Liu, Biao Wang, Boxuan Wu, Yue Wang, Yifan Zhang, Zhongxian Tian, Ning Mu, Xianglin Zhang, Xiaogang Zhao, Yunpeng Zhao, Peichao Li

Background: Retinoblastoma Transcriptional Corepressor 1 (RB1) is a critical tumor suppressor restricting the malignant progression of cancer cells. Emerging evidence indicates that RB1 mutations typically promote tumorigenesis through loss of its tumor-suppressive functions. Yet, the biological significance of mutated RB1, specifically certain rare variants, in non-small cell lung cancer (NSCLC) remains elusive. Here, we first reported a rare and previously uncharacterized missense mutation in RB1, the 680th residue isoleucine replaced by threonine (RB1-I680T), in NSCLC.

Methods: To investigate the functional and mechanistic consequences of the RB1-I680T mutation in NSCLC, we first used CRISPR-Cas9 to knock out endogenous RB1 in NSCLC cells. Then, we generated cell models harboring the RB1-I680T mutation by infecting these knockout cells with lentivirus carrying either wild-type RB1 (RB1-WT) or RB1-I680T expression constructs. The biological phenotypes mediated by RB1-I680T were investigated using in vitro and in vivo experiments. The exploration of the molecular mechanism was performed primarily through co-immunoprecipitation, immunofluorescence, dual-luciferase reporter assays, western blot analysis, and protein docking and dynamics simulation.

Results: Our study demonstrated that the I680T mutation caused faster tumor growth and potentiated chemotherapy-induced tumor regression compared to RB1-WT control. Mechanistic studies illustrated that the I680T mutation in RB1 disrupted its inhibition of E2F1 transcriptional activity by weakening the physical interaction between RB1 and E2F1 in a manner dependent on conformational flexibility of RB1 pocket B domain, which is essential for sustaining the enhanced proliferation and chemosensitivity in NSCLC cells.

Conclusion: Our findings elucidate that the I680T mutation-induced loss-of-function of RB1 simultaneously confers invasive proliferation and chemotherapeutic vulnerability to tumor cells, suggesting that RB1-I680T could serve as a predictive biomarker for chemotherapy response in NSCLC. Stratifying patients based on the RB1-I680T mutation status may enable personalized therapeutic strategies, particularly for tumors with E2F1 dysregulation.

背景:视网膜母细胞瘤转录辅抑制因子1 (RB1)是一种重要的肿瘤抑制因子,可限制癌细胞的恶性进展。新出现的证据表明,RB1突变通常通过丧失其肿瘤抑制功能来促进肿瘤发生。然而,RB1突变的生物学意义,特别是某些罕见的变异,在非小细胞肺癌(NSCLC)中仍然难以捉摸。在这里,我们首次报道了非小细胞肺癌中RB1(第680个残基异亮氨酸被苏氨酸取代(RB1- i680t))的罕见且以前未表征的错义突变。方法:为了研究RB1- i680t突变在非小细胞肺癌中的功能和机制后果,我们首先使用CRISPR-Cas9敲除非小细胞肺癌细胞中的内源性RB1。然后,我们用携带野生型RB1 (RB1- wt)或RB1- i680t表达构建体的慢病毒感染这些敲除细胞,生成了含有RB1- i680t突变的细胞模型。通过体外和体内实验研究了RB1-I680T介导的生物学表型。分子机制的探索主要通过共免疫沉淀、免疫荧光、双荧光素酶报告基因检测、western blot分析、蛋白对接和动力学模拟等方法进行。结果:我们的研究表明,与RB1-WT对照相比,I680T突变导致肿瘤生长更快,化疗诱导的肿瘤消退增强。机制研究表明,RB1的I680T突变通过削弱RB1和E2F1之间的物理相互作用来破坏其对E2F1转录活性的抑制,这种相互作用依赖于RB1口袋B结构域的构象灵活性,这对于维持非小细胞肺癌细胞增殖和化学敏感性的增强至关重要。结论:我们的研究结果阐明了I680T突变诱导的RB1功能丧失同时赋予肿瘤细胞侵袭性增殖和化疗易感性,这表明RB1-I680T可以作为非小细胞肺癌化疗反应的预测性生物标志物。根据RB1-I680T突变状态对患者进行分层可以实现个性化的治疗策略,特别是对于E2F1失调的肿瘤。
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引用次数: 0
C-di-AMP sensitizes colorectal cancer to CD47 antibodies by activating NF-κB to promote macrophage phagocytosis. C-di-AMP通过激活NF-κB促进巨噬细胞吞噬,使结直肠癌对CD47抗体增敏。
IF 8.2 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-31 DOI: 10.1186/s12964-026-02703-8
Yu Hao, Yu Fan, Hongzhi He, Zhi Zeng, Yawen Zong, Zhenzhou Yang, Bolei Li, Lei Cheng
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引用次数: 0
Interplay between natural killer cells and ferroptosis: novel insights in tumor immunity and therapeutic potential. 自然杀伤细胞和铁下垂之间的相互作用:肿瘤免疫和治疗潜力的新见解。
IF 8.2 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-31 DOI: 10.1186/s12964-026-02697-3
Jing Sun, Shu Pan, Nan Wang, Xiaoshan Ma, Xige Yang

Natural killer (NK) cells are essential components of the innate immune system, executing antitumor functions through direct cytotoxicity and cytokine release. Increasing evidence highlights a bidirectional relationship between NK cell activity and ferroptosis, a regulated form of iron-dependent lipid peroxidation, within the tumor microenvironment (TME). NK cell-secreted interferon-gamma can inhibit tumor antioxidant defenses, such as SLC7A11, thereby sensitizing cancer cells to ferroptotic death. In turn, ferroptotic tumor cells release damage-associated molecular patterns that modulate NK cell recruitment and activation. The TME, characterized by hypoxia, elevated adenosine, and immunosuppressive populations, further regulates this interaction by limiting NK cytotoxicity and promoting tumor resistance to ferroptosis. Preclinical studies indicate that combining ferroptosis inducers with NK cell-based immunotherapies yields synergistic antitumor effects. Additionally, genetically engineered NK cells designed to enhance tumor ferroptotic susceptibility represent a promising strategy to overcome immune evasion. This review summarizes recent discoveries on the NK-ferroptosis axis, delineates the molecular and cellular mechanisms governing their crosstalk in the TME, and explores therapeutic opportunities to leverage this pathway for cancer treatment. Understanding this regulatory network could inform the development of innovative immunometabolic interventions to improve current immunotherapy outcomes.

自然杀伤(NK)细胞是先天免疫系统的重要组成部分,通过直接的细胞毒性和细胞因子释放来执行抗肿瘤功能。越来越多的证据强调NK细胞活性和铁下垂之间的双向关系,铁下垂是肿瘤微环境(TME)中铁依赖性脂质过氧化的一种调节形式。NK细胞分泌的干扰素- γ可以抑制肿瘤的抗氧化防御,如SLC7A11,从而使癌细胞对铁致死亡敏感。反过来,嗜铁性肿瘤细胞释放损伤相关的分子模式,调节NK细胞的募集和激活。TME以缺氧、腺苷升高和免疫抑制人群为特征,通过限制NK细胞毒性和促进肿瘤对铁下垂的抵抗,进一步调节这种相互作用。临床前研究表明,将铁下垂诱导剂与NK细胞免疫疗法联合使用可产生协同抗肿瘤作用。此外,基因工程NK细胞旨在增强肿瘤的铁致敏感性,这是克服免疫逃避的一种有希望的策略。本文总结了最近在nk -铁下垂轴上的发现,描述了在TME中控制它们串扰的分子和细胞机制,并探索了利用这一途径进行癌症治疗的治疗机会。了解这种调节网络可以为创新免疫代谢干预措施的发展提供信息,以改善当前的免疫治疗结果。
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引用次数: 0
Identification of LncRNAs scaffolding a chromatin-associated gene regulatory complex in breast cancer cells comprising ERα, DOT1L and menin. 乳腺癌细胞中ERα、DOT1L和menin组成的染色质相关基因调控复合体LncRNAs支架的鉴定
IF 8.2 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-30 DOI: 10.1186/s12964-026-02702-9
Viola Melone, Annamaria Salvati, Luigi Palo, Domenico Palumbo, Domenico Memoli, Maria Ianniello, Mehrnoush Nikzaban, Aurora Casaburi, Jessica Lamberti, Francesca Rizzo, Alessandro Weisz, Giovanni Nassa, Roberta Tarallo

In Estrogen Receptor (ER)-positive Breast Cancer (BC), the development of resistance to endocrine therapies remains a significant clinical challenge, often linked to transcriptional and epigenetic deregulations. The main hallmark in this neoplasm, the nuclear receptor ERα, drives oncogenesis by recruiting multiple coregulators, including the histone methyltransferase DOT1L and the scaffold protein menin, forming a pro-tumorigenic machinery. However, the precise mechanism of this complex assembly is not fully understood. Our study investigates the molecular basis of ERα-DOT1L-menin functional association, focusing on the potential scaffolding role of long non-coding RNAs (lncRNAs).To identify lncRNAs specifically involved in this network, we performed native nuclear immunoprecipitation coupled to RNA sequencing (RIP-Seq) for DOT1L and menin in MCF-7 BC cells. Cross comparison between these datasets and existing ERα-interacting RNA data revealed six common molecules. Among these, we focused on PVT1, a known oncogenic RNA previously characterized by our group and able to co-recruit ERα and PRC2 complex onto specific chromatin loci, whose high expression, along with ERα, DOT1L and menin, correlates with worse patients' survival. Functional experiments confirmed that PVT1 knock down reduces ERα, menin and DOT1L association, supporting its role as a molecular scaffold in this complex. Transcriptomic profiling upon ERα, DOT1L, menin, or PVT1 blockade uncovered a common gene signature enriched in pathways covering main BC hallmarks. Many of deregulated genes were directly bound by all three proteins, suggesting a coordinated transcriptional regulation, revealing a critical axis involving ERα, DOT1L, menin and PVT1. Targeting this RNA-dependent chromatin associated regulatory complex could offer novel therapeutic strategies for BC treatment.

在雌激素受体(ER)阳性的乳腺癌(BC)中,对内分泌治疗的耐药性的发展仍然是一个重大的临床挑战,通常与转录和表观遗传失调有关。这种肿瘤的主要特征是核受体ERα,它通过募集多种共调节因子(包括组蛋白甲基转移酶DOT1L和支架蛋白menin)来驱动肿瘤发生,形成促肿瘤机制。然而,这种复杂组装的确切机制尚不完全清楚。本研究探讨了ERα-DOT1L-menin功能关联的分子基础,重点研究了长链非编码rna (lncRNAs)的潜在支架作用。为了鉴定特异性参与该网络的lncRNAs,我们对MCF-7 BC细胞中的DOT1L和menin进行了天然核免疫沉淀结合RNA测序(RIP-Seq)。将这些数据集与现有的er α相互作用RNA数据进行交叉比较,发现了六个共同的分子。其中,我们重点研究了PVT1,这是我们小组先前发现的一种已知的致癌RNA,能够将ERα和PRC2复合物共同募集到特定的染色质位点上,其高表达与ERα、DOT1L和menin一起与患者的生存率降低相关。功能实验证实PVT1敲除可减少ERα、menin和DOT1L的关联,支持其作为分子支架在该复合体中的作用。ERα, DOT1L, menin或PVT1阻断的转录组学分析揭示了在覆盖主要BC标志的途径中富集的共同基因特征。许多不受调控的基因直接与这三种蛋白结合,表明存在协调的转录调控,揭示了涉及ERα、DOT1L、menin和PVT1的关键轴。靶向这种rna依赖的染色质相关调控复合体可能为BC治疗提供新的治疗策略。
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引用次数: 0
Osimertinib activates TFEB to trigger hepatocyte cytoplasmic vacuolation-associated cell death. 奥西替尼激活TFEB触发肝细胞细胞质空泡相关的细胞死亡。
IF 8.2 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-30 DOI: 10.1186/s12964-026-02688-4
Yueping Qiu, Yijie Liu, Haiying Ding, Wenxiu Xin, Shuanghui Lu, Yan Hu, Jing Chen, Qinjie Weng, Jiajia Wang, Luo Fang
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引用次数: 0
Combination therapy strategies in engineered 177Lu radiopharmaceuticals beyond single modality: design principles and application outlet. 工程177Lu放射性药物超越单一模式的联合治疗策略:设计原则和应用出路。
IF 8.2 2区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-29 DOI: 10.1186/s12964-026-02700-x
Yi Zhu, Guobiao Zhong, Wei Zhang, Weijun Wei, Binxu Yin, Kun Zhang

177Lu has attracted substantial attention in recent years as a medical radionuclide. It emits both β-particles (maximum energy 0.497 MeV) and γ-rays (113/208 keV), which provides unique advantages for theranostic applications in oncology. Since the U.S. Food and Drug Administration (FDA) approved [177Lu]Lu-DOTA-TATE in 2018, 177Lu-based radiopharmaceuticals have demonstrated significant clinical value in the targeted treatment of neuroendocrine tumors (NETs) and prostate cancer. However, monotherapy still faces major challenges, including tumor heterogeneity, drug resistance, and dose-related toxicity. These limitations hinder the full therapeutic potential of 177Lu radiopharmaceuticals. Combination therapy has therefore emerged as a promising strategy to address these obstacles. This review provides a systematic overview of the preparation techniques, clinical efficacy, and combination therapy approaches involving 177Lu radiopharmaceuticals, with the aim of offering a theoretical foundation and practical guidance for optimizing therapeutic paradigms.

177Lu作为一种医用放射性核素近年来引起了广泛关注。它同时发射β粒子(最大能量0.497 MeV)和γ射线(113/208 keV),为肿瘤治疗应用提供了独特的优势。自2018年美国食品药品监督管理局(FDA)批准[177Lu]Lu-DOTA-TATE以来,以177Lu为基础的放射性药物在靶向治疗神经内分泌肿瘤(NETs)和前列腺癌方面显示出了显著的临床价值。然而,单药治疗仍然面临主要挑战,包括肿瘤异质性、耐药性和剂量相关毒性。这些限制阻碍了177Lu放射性药物的全部治疗潜力。因此,联合治疗已成为解决这些障碍的一种有希望的策略。本文系统综述了177Lu类放射性药物的制备技术、临床疗效及联合治疗方法,旨在为优化治疗模式提供理论基础和实践指导。
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引用次数: 0
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Cell Communication and Signaling
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