Pub Date : 2026-02-10DOI: 10.1016/j.bspc.2026.109718
Shankar Narayan S , Aishwarya R , Nidhi S Vaishnaw
A significant contributor to the development of atherosclerosis is endothelial dysfunction, which is typified by elevated permeability. In order to understand the intricate interactions among low-density lipoprotein (LDL), cytokines (A), inflammatory immune cells (M), endothelial permeability (E), and vascular remodeling (R), we construct an evolving mathematical model in the present research. Using PID control theory, we introduce a novel approach to modulate endothelial permeability, demonstrating how proportional , integral , and derivatives control terms can stabilize the system and restore endothelial function. Our simulations reveal nonlinear relationships and critical thresholds, where a increase in LDL leads to a rise in endothelial permeability, highlighting the sensitivity of the endothelium to small changes in LDL levels. Heatmap and other plot analyses further elucidate the system’s dynamics, showing that low levels of LDL (below ) and cytokines (below ) are sufficient to induce significant endothelial dysfunction. At higher concentrations, permeability stabilizes near . These findings underscore the importance of early intervention and multi-targeted therapies to mitigate endothelial damage and slow atherosclerosis progression. This study advances our understanding of the molecular mechanisms driving endothelial permeability and provides a computational framework for designing personalised therapeutic strategies.
{"title":"Mathematical modelling of atherogenesis: temperamental endothelial permeability","authors":"Shankar Narayan S , Aishwarya R , Nidhi S Vaishnaw","doi":"10.1016/j.bspc.2026.109718","DOIUrl":"10.1016/j.bspc.2026.109718","url":null,"abstract":"<div><div>A significant contributor to the development of atherosclerosis is endothelial dysfunction, which is typified by elevated permeability. In order to understand the intricate interactions among low-density lipoprotein (LDL), cytokines (A), inflammatory immune cells (M), endothelial permeability (E), and vascular remodeling (R), we construct an evolving mathematical model in the present research. Using PID control theory, we introduce a novel approach to modulate endothelial permeability, demonstrating how proportional <span><math><mrow><mo>(</mo><msub><mi>k</mi><mi>p</mi></msub><mo>=</mo><mn>0.01</mn><mo>)</mo></mrow></math></span>, integral <span><math><mrow><mo>(</mo><msub><mi>k</mi><mi>i</mi></msub><mo>=</mo><mn>0.001</mn><mo>)</mo></mrow></math></span>, and derivatives <span><math><mrow><mo>(</mo><msub><mi>k</mi><mi>d</mi></msub><mo>=</mo><mn>0.01</mn><mo>)</mo></mrow></math></span> control terms can stabilize the system and restore endothelial function. Our simulations reveal nonlinear relationships and critical thresholds, where a <span><math><mrow><mn>10</mn><mo>%</mo></mrow></math></span> increase in LDL leads to a <span><math><mrow><mn>25</mn><mo>%</mo></mrow></math></span> rise in endothelial permeability, highlighting the sensitivity of the endothelium to small changes in LDL levels. Heatmap and other plot analyses further elucidate the system’s dynamics, showing that low levels of LDL (below <span><math><mrow><mn>2</mn><mo>×</mo><msup><mrow><mn>10</mn></mrow><mrow><mo>-</mo><mn>3</mn></mrow></msup><mi>g</mi><mo>.</mo><mi>c</mi><msup><mrow><mi>m</mi></mrow><mrow><mo>-</mo><mn>3</mn></mrow></msup></mrow></math></span>) and cytokines (below <span><math><mrow><msup><mrow><mn>10</mn></mrow><mrow><mo>-</mo><mn>7</mn></mrow></msup><mi>g</mi><mo>.</mo><mi>c</mi><msup><mrow><mi>m</mi></mrow><mrow><mo>-</mo><mn>3</mn></mrow></msup></mrow></math></span>) are sufficient to induce significant endothelial dysfunction. At higher concentrations, permeability stabilizes near <span><math><mrow><mi>E</mi><mo>≈</mo><mn>12</mn><mo>×</mo><msup><mrow><mn>10</mn></mrow><mrow><mo>-</mo><mn>3</mn></mrow></msup><mi>c</mi><msup><mrow><mi>m</mi></mrow><mn>3</mn></msup><mo>/</mo><mrow><mo>(</mo><mi>g</mi><mo>.</mo><mi>d</mi><mi>a</mi><mi>y</mi><mo>)</mo></mrow></mrow></math></span>. These findings underscore the importance of early intervention and multi-targeted therapies to mitigate endothelial damage and slow atherosclerosis progression. This study advances our understanding of the molecular mechanisms driving endothelial permeability and provides a computational framework for designing personalised therapeutic strategies.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"119 ","pages":"Article 109718"},"PeriodicalIF":4.9,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192856","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10DOI: 10.1016/j.bspc.2026.109846
Wenjuan Lu , Zhongxing Liu , Yu Chen , Jinxi Wang
The precise identification of sleep arousal events is critical for sleep quality assessment and diagnosis of sleep disorders. Current methods face three major limitations: (1) the lack of an effective multi-channel signal fusion method, (2) inadequate handling of class-imbalanced datasets, and (3) reliance on expert annotations, which hinder the clinical applicability of existing methods. To address these limitations, an integrated method named TFR-GANNet was proposed, which incorporates three modules for multi-channel data fusion, data augmentation, and sleep arousal identification. First, the data fusion module implements a novel time–frequency ridge-based multi-channel signal fusion (TFR-MSF) strategy to construct a global time–frequency ridge index map (GTFRIM) by extracting and integrating channel-specific ridge features, enabling physiologically meaningful signal representation. Subsequently, the data augmentation module utilizes a conditional Wasserstein generative adversarial network with gradient penalty (CWGAN-GP) to synthesize GTFRIM samples, which effectively balances the data distribution across different classes. Finally, the sleep arousal identification module consists of a dense convolutional network integrated with a multi-head attention mechanism (DMNet), enabling accurate identification of sleep arousal events from GTFRIMs. On the PhysioNet 2018 sleep dataset, TFR-GANNet achieved state-of-the-art performance compared with existing methods, with an accuracy of 0.9556, an AUROC of 0.9699, an F1-score of 0.9575, and an AUPRC of 0.8751. Extensive ablation studies confirmed the individual contributions of each module. The proposed framework advances sleep analysis through an integrated solution to key challenges in data fusion, class imbalance, and annotation scarcity, paving the way for robust applications in clinical and research domains.
{"title":"TFR-GANNet: Multi-channel time–frequency ridge fusion and CWGAN-GP for sleep arousal identification","authors":"Wenjuan Lu , Zhongxing Liu , Yu Chen , Jinxi Wang","doi":"10.1016/j.bspc.2026.109846","DOIUrl":"10.1016/j.bspc.2026.109846","url":null,"abstract":"<div><div>The precise identification of sleep arousal events is critical for sleep quality assessment and diagnosis of sleep disorders. Current methods face three major limitations: (1) the lack of an effective multi-channel signal fusion method, (2) inadequate handling of class-imbalanced datasets, and (3) reliance on expert annotations, which hinder the clinical applicability of existing methods. To address these limitations, an integrated method named TFR-GANNet was proposed, which incorporates three modules for multi-channel data fusion, data augmentation, and sleep arousal identification. First, the data fusion module implements a novel time–frequency ridge-based multi-channel signal fusion (TFR-MSF) strategy to construct a global time–frequency ridge index map (GTFRIM) by extracting and integrating channel-specific ridge features, enabling physiologically meaningful signal representation. Subsequently, the data augmentation module utilizes a conditional Wasserstein generative adversarial network with gradient penalty (CWGAN-GP) to synthesize GTFRIM samples, which effectively balances the data distribution across different classes. Finally, the sleep arousal identification module consists of a dense convolutional network integrated with a multi-head attention mechanism (DMNet), enabling accurate identification of sleep arousal events from GTFRIMs. On the PhysioNet 2018 sleep dataset, TFR-GANNet achieved state-of-the-art performance compared with existing methods, with an accuracy of 0.9556, an AUROC of 0.9699, an F1-score of 0.9575, and an AUPRC of 0.8751. Extensive ablation studies confirmed the individual contributions of each module. The proposed framework advances sleep analysis through an integrated solution to key challenges in data fusion, class imbalance, and annotation scarcity, paving the way for robust applications in clinical and research domains.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"119 ","pages":"Article 109846"},"PeriodicalIF":4.9,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10DOI: 10.1016/j.bspc.2026.109749
Haojie Wang, Yuanhu Jing, Hongyuan Li, Yan Zhang, Congcong Chang, Gongning Shi
This study developed a two-stage cascaded segmentation framework with integrated attention mechanisms (SE/CBAM) that accommodates multimodal inputs from CT, MRI, and ultrasound and demonstrates robustness to missing modalities. The proposed approach was systematically evaluated on data from 322 with deep vein thrombosis (DVT) and compared against representative methods, including nnU-Net, Swin-UNet, UNETR, and MedSAM/EMedSAM. Under standardized preprocessing and five-fold cross-validation, our model achieved a Dice coefficient of 0.873 ± 0.018, IoU of 0.783 ± 0.021, PR-AUC of 0.921, and ROC-AUC of 0.942 on an independent test set, significantly outperforming nnU-Net, Swin-UNet, UNETR, and MedSAM/EMedSAM baselines. Grad-CAM heatmaps showed strong spatial concordance with expert annotations at key anatomical regions. Sensitivity analyses confirmed robustness to hyperparameter variation, noise, and single-modality dropout (<1% fluctuation). To enhance biological interpretability, we integrated transcriptomic (GEO, n = 40), proteomic (PRIDE, n = 30), and metabolomic (MetaboLights, n = 20) datasets, identifying key molecules such as RPS3A, RPL31, and TP53, as well as differential metabolites including oxidized glutathione, succinate, and betaine. These molecular alterations were predominantly enriched in glutathione metabolism, the tricarboxylic acid (TCA) cycle, and inflammation-related pathways (e.g., the IL-17 and TNF signaling axes). Notably, these pathways are directionally consistent with the inflammatory activation and oxidative stress features reflected in the high-risk thrombotic anatomical regions emphasized by the imaging model, thereby providing supportive mechanistic interpretation for the imaging-based recognition results. Collectively, this study establishes a methodological foundation for interpretable AI-driven diagnosis and precision intervention in DVT and demonstrates potential for extension to other vascular diseases.
本研究开发了一个具有综合注意机制(SE/CBAM)的两阶段级联分割框架,该框架可容纳来自CT、MRI和超声的多模态输入,并证明了对缺失模态的鲁棒性。我们对322例深静脉血栓患者的数据进行了系统评估,并与具有代表性的方法(包括nnU-Net、swwin - unet、UNETR和MedSAM/EMedSAM)进行了比较。经过标准化预处理和五重交叉验证,我们的模型在独立测试集上的Dice系数为0.873±0.018,IoU为0.783±0.021,PR-AUC为0.921,ROC-AUC为0.942,显著优于nnU-Net、swun - unet、UNETR和MedSAM/EMedSAM基线。在关键解剖区域,Grad-CAM热图与专家标注的空间一致性较强。敏感性分析证实了对超参数变化、噪声和单模态丢失(<;1%波动)的稳健性。为了提高生物学可解释性,我们整合了转录组学(GEO, n = 40)、蛋白质组学(PRIDE, n = 30)和代谢组学(metabolomics, n = 20)数据集,确定了关键分子,如RPS3A、RPL31和TP53,以及差异代谢物,包括氧化谷胱甘肽、琥珀酸盐和甜菜碱。这些分子改变主要富集于谷胱甘肽代谢、三羧酸(TCA)循环和炎症相关途径(例如,IL-17和TNF信号轴)。值得注意的是,这些途径与成像模型强调的高危血栓解剖区域所反映的炎症激活和氧化应激特征在方向上是一致的,从而为基于成像的识别结果提供了支持性的机制解释。总的来说,本研究为可解释的人工智能驱动的DVT诊断和精确干预奠定了方法学基础,并展示了扩展到其他血管疾病的潜力。
{"title":"Multimodal deep learning with attention mechanisms for automated detection of lower extremity deep vein thrombosis: Integrating ultrasound, CT, and MRI","authors":"Haojie Wang, Yuanhu Jing, Hongyuan Li, Yan Zhang, Congcong Chang, Gongning Shi","doi":"10.1016/j.bspc.2026.109749","DOIUrl":"10.1016/j.bspc.2026.109749","url":null,"abstract":"<div><div>This study developed a two-stage cascaded segmentation framework with integrated attention mechanisms (SE/CBAM) that accommodates multimodal inputs from CT, MRI, and ultrasound and demonstrates robustness to missing modalities. The proposed approach was systematically evaluated on data from 322 with deep vein thrombosis (DVT) and compared against representative methods, including nnU-Net, Swin-UNet, UNETR, and MedSAM/EMedSAM. Under standardized preprocessing and five-fold cross-validation, our model achieved a Dice coefficient of 0.873 ± 0.018, IoU of 0.783 ± 0.021, PR-AUC of 0.921, and ROC-AUC of 0.942 on an independent test set, significantly outperforming nnU-Net, Swin-UNet, UNETR, and MedSAM/EMedSAM baselines. Grad-CAM heatmaps showed strong spatial concordance with expert annotations at key anatomical regions. Sensitivity analyses confirmed robustness to hyperparameter variation, noise, and single-modality dropout (<1% fluctuation). To enhance biological interpretability, we integrated transcriptomic (GEO, n = 40), proteomic (PRIDE, n = 30), and metabolomic (MetaboLights, n = 20) datasets, identifying key molecules such as RPS3A, RPL31, and TP53, as well as differential metabolites including oxidized glutathione, succinate, and betaine. These molecular alterations were predominantly enriched in glutathione metabolism, the tricarboxylic acid (TCA) cycle, and inflammation-related pathways (e.g., the IL-17 and TNF signaling axes). Notably, these pathways are directionally consistent with the inflammatory activation and oxidative stress features reflected in the high-risk thrombotic anatomical regions emphasized by the imaging model, thereby providing supportive mechanistic interpretation for the imaging-based recognition results. Collectively, this study establishes a methodological foundation for interpretable AI-driven diagnosis and precision intervention in DVT and demonstrates potential for extension to other vascular diseases.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"119 ","pages":"Article 109749"},"PeriodicalIF":4.9,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192858","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10DOI: 10.1016/j.bspc.2026.109753
Tianyu Shi , Jia Tang , Yantao Sun , Zhimin Liu
As the fourth most common cancer among women worldwide, cervical cancer diagnosis relies heavily on accurate and automated segmentation of cell nuclei in pathological images for early screening. To address challenges such as blurred boundaries, overlapping cells, and complex background interference in this task, we propose a novel triplet-branch diffusion model which is constructed in three key stages: First, a diffusion backbone network is developed to progressively reconstruct the target structures from noisy masks via a denoising process, integrating a frequency-domain attention mechanism to suppress high-frequency noise. Second, a semantic condition branch based on the U-Net architecture is designed to extract multi-scale image features, which injects anatomical priors into the diffusion backbone through cross-layer connections. Third, an edge guided branch is introduced, which employs a Boundary Attention Module to fuse explicit edge features extracted by the Canny operator into the diffusion backbone, enabling multi-level boundary guidance during the decoding phase. We validate the proposed model on two public datasets and one internal private dataset, achieving Dice coefficients of 94.36%, 95.04%, and 93.16%, respectively—representing improvements of 1.2% to 2.1% over state-of-the-art models in the field. Ablation studies on the proposed modules and loss functions, as well as visual analyses of the reverse diffusion process, further demonstrate the effectiveness of our approach. This method effectively reduces boundary errors in the segmentation of cervical cell nuclei while maintaining high interpretability. It provides potential intelligent diagnostic support for large-scale early screening of cervical cancer. However, further validation of its reliability on multi-center or clinical datasets is necessary.
{"title":"Triplet-branch diffusion model with conditional guidance and boundary enhancement for cervical nucleus segmentation","authors":"Tianyu Shi , Jia Tang , Yantao Sun , Zhimin Liu","doi":"10.1016/j.bspc.2026.109753","DOIUrl":"10.1016/j.bspc.2026.109753","url":null,"abstract":"<div><div>As the fourth most common cancer among women worldwide, cervical cancer diagnosis relies heavily on accurate and automated segmentation of cell nuclei in pathological images for early screening. To address challenges such as blurred boundaries, overlapping cells, and complex background interference in this task, we propose a novel triplet-branch diffusion model which is constructed in three key stages: First, a diffusion backbone network is developed to progressively reconstruct the target structures from noisy masks via a denoising process, integrating a frequency-domain attention mechanism to suppress high-frequency noise. Second, a semantic condition branch based on the U-Net architecture is designed to extract multi-scale image features, which injects anatomical priors into the diffusion backbone through cross-layer connections. Third, an edge guided branch is introduced, which employs a Boundary Attention Module to fuse explicit edge features extracted by the Canny operator into the diffusion backbone, enabling multi-level boundary guidance during the decoding phase. We validate the proposed model on two public datasets and one internal private dataset, achieving Dice coefficients of 94.36%, 95.04%, and 93.16%, respectively—representing improvements of 1.2% to 2.1% over state-of-the-art models in the field. Ablation studies on the proposed modules and loss functions, as well as visual analyses of the reverse diffusion process, further demonstrate the effectiveness of our approach. This method effectively reduces boundary errors in the segmentation of cervical cell nuclei while maintaining high interpretability. It provides potential intelligent diagnostic support for large-scale early screening of cervical cancer. However, further validation of its reliability on multi-center or clinical datasets is necessary.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"119 ","pages":"Article 109753"},"PeriodicalIF":4.9,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146191958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Knee Osteoarthritis (KOA) is a degenerative joint disorder affecting middle-aged and elderly individuals, with its diagnosis facing challenges in achieving objective, transparent quantification and incorporating clinical manifestations, despite advances in deep-learning for medical imaging. To address these issues, in this paper, a deep learning-based hybrid (Convolutional Neural Network (CNN)-Transformer encoder) classification framework, DeepOsteoCls, is proposed to perform binary and multi-class classification of KOA from X-rays and MRI scans from OsteoXRNet and OsteoMRNet models separately, with Gradient-weighted Class Activation Mappings (Grad-CAMs). The Osteoarthritis Edge Detection (OAED) and Multi-Resolution Feature Integration (MRFI) modules are also introduced in the proposed framework to facilitate the extraction of edge-based features from X-ray images and multi-scale regional features from the MRI volume, respectively. Furthermore, a disorder-aware weakly supervised training scheme—Domain Knowledge Transfer and Entropy Regularization (DoKTER) is proposed to enhance the explainability of Radiological KOA (RKOA) diagnosis by predicting the region score and GradCAMs of MRI scans. Comprehensive experiments on the Osteoarthritis Initiative (OAI) dataset demonstrated that the proposed framework achieved a classification accuracy of 72.10% for X-ray and 53.16% for MRI in a multi-class classification task, and 85.74% for X-ray and 81.04% for MRI in a binary classification task, outperforming state-of-the-art models. The DoKTER scheme is found to accurately classify the affected region with 65.15% and 62.5% for the OAI and Multi-Hospital Knee Osteoarthritis (MHKOA) datasets, respectively. Additionally, Femoral Cartilage Thickness (FCT) in non-RKOA subjects can be effectively monitored using the region score, with distinct cut-offs values. The code is available at: https://github.com/adaydar/Deep-OsteoCls
{"title":"DeepOsteoCls: Deep learning-based framework for Knee Osteoarthritis Classification with qualitative explanations from radiographs and MRI volumes","authors":"Akshay Daydar , Arijit Sur , Subramani Kanagaraj , Hanif Laskar","doi":"10.1016/j.bspc.2026.109819","DOIUrl":"10.1016/j.bspc.2026.109819","url":null,"abstract":"<div><div>Knee Osteoarthritis (KOA) is a degenerative joint disorder affecting middle-aged and elderly individuals, with its diagnosis facing challenges in achieving objective, transparent quantification and incorporating clinical manifestations, despite advances in deep-learning for medical imaging. To address these issues, in this paper, a deep learning-based hybrid (Convolutional Neural Network (CNN)-Transformer encoder) classification framework, DeepOsteoCls, is proposed to perform binary and multi-class classification of KOA from X-rays and MRI scans from OsteoXRNet and OsteoMRNet models separately, with Gradient-weighted Class Activation Mappings (Grad-CAMs). The Osteoarthritis Edge Detection (OAED) and Multi-Resolution Feature Integration (MRFI) modules are also introduced in the proposed framework to facilitate the extraction of edge-based features from X-ray images and multi-scale regional features from the MRI volume, respectively. Furthermore, a disorder-aware weakly supervised training scheme—Domain Knowledge Transfer and Entropy Regularization (DoKTER) is proposed to enhance the explainability of Radiological KOA (RKOA) diagnosis by predicting the region score and GradCAMs of MRI scans. Comprehensive experiments on the Osteoarthritis Initiative (OAI) dataset demonstrated that the proposed framework achieved a classification accuracy of 72.10% for X-ray and 53.16% for MRI in a multi-class classification task, and 85.74% for X-ray and 81.04% for MRI in a binary classification task, outperforming state-of-the-art models. The DoKTER scheme is found to accurately classify the affected region with 65.15% and 62.5% for the OAI and Multi-Hospital Knee Osteoarthritis (MHKOA) datasets, respectively. Additionally, Femoral Cartilage Thickness (FCT) in non-RKOA subjects can be effectively monitored using the region score, with distinct cut-offs values. The code is available at: <span><span>https://github.com/adaydar/Deep-OsteoCls</span><svg><path></path></svg></span></div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"119 ","pages":"Article 109819"},"PeriodicalIF":4.9,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10DOI: 10.1016/j.bspc.2026.109710
Pei-Chun Su , Chao-Yi Chen , Chia-Hao Kuo , Wei-Chung Tsai , Hau-Tieng Wu
Objective
The widely used bandpass filter (BPF)-based algorithm for recovering sympathetic nerve activity (SNA) from the skin sympathetic nerve activity (SKNA −I) signal, recorded via electrocardiogram electrodes or subcutaneous sympathetic nerve activity (SCNA-I) in a lead I setup, has limitations. It excludes spectral information outside the BPF range and may retain artifacts, such as cardiac activity or pacemaker interference, in the recovered SNA (rSNA) signal. This study aims to develop an algorithm that recovers the full spectral SNA information as comprehensively as possible for evaluating the autonomic nervous system (ANS).
Methods
We propose a novel algorithm, S3 (SNA from Shrink and Subtraction), which integrates the optimal shrinkage algorithm (eOptShrink) with the template subtraction (TS) method, and make the Matlab code publicly available. The performance of S3 was evaluated against other algorithms using semi-real simulated SKNA-I data, a human SKNA-I database including subjects with pacemakers or atrial fibrillation (Af), and a mice SCNA-I database.
Results
The S3 algorithm demonstrated numerical efficiency and outperformed existing approaches, including traditional TS, BPF and other methods, in both time and frequency domains. Notably, in addition to the traditional 500–1000 Hz spectral band, S3 effectively recovers spectral information across the 50–300 Hz and 300–500 Hz frequency bands. All quantitative results are supported by the rSNA tracing for visual inspections.
Conclusion
S3 overcomes key limitations of existing methods and accurately recovers full-spectrum SNA from human SKNA-I, including cases with pacemaker and AF, as well as from mouse SCNA-I, with both theoretical justification and numerical validation. Since S3 can recover spectral information across the 50–300 Hz and 300–500 Hz frequency bands, and ECG signals in the homecare environments are typically sampled at 1–2 kHz, S3 is potentially suitable for home-based ANS evaluation.
Significance
S3 enables exploration of the entire SNA spectrum and shows strong potential for ANS evaluation in homecare settings.
目的广泛使用的基于带通滤波器(BPF)的算法从皮肤交感神经活动(SKNA -I)信号中恢复交感神经活动(SNA),这些信号是通过心电图电极或在导联I装置中记录的皮下交感神经活动(SCNA-I),但存在局限性。它排除了BPF范围外的频谱信息,并可能保留伪象,如心脏活动或起搏器干扰,在恢复的SNA (rSNA)信号中。本研究旨在开发一种尽可能全面地恢复全谱SNA信息的算法,用于评估自主神经系统(ANS)。方法我们提出了一种新的算法S3 (SNA from Shrink and Subtraction),它将最优收缩算法(eOptShrink)与模板减法(TS)方法相结合,并公开了Matlab代码。通过半真实的模拟SKNA-I数据、包括心脏起搏器或心房颤动(Af)受试者的人类SKNA-I数据库和小鼠SCNA-I数据库,对S3的性能与其他算法进行了评估。结果S3算法在时域和频域均优于传统TS、BPF等方法。值得注意的是,除了传统的500-1000 Hz频段外,S3还可以有效地恢复50-300 Hz和300-500 Hz频段的频谱信息。所有定量结果均由目视检查的rSNA追踪支持。结论s3克服了现有方法的主要局限性,准确地恢复了包括起搏器和心房颤动病例在内的人SCNA-I以及小鼠SCNA-I的全谱SNA,具有理论依据和数值验证。由于S3可以恢复50-300 Hz和300-500 Hz频段的频谱信息,并且家庭护理环境中的心电信号通常以1-2 kHz采样,因此S3可能适用于基于家庭的ANS评估。意义3能够探索整个SNA谱,并显示出在家庭护理环境中进行ANS评估的强大潜力。
{"title":"Sympathetic nerve activity recovery from the skin recording using the modern optimal shrinkage technique","authors":"Pei-Chun Su , Chao-Yi Chen , Chia-Hao Kuo , Wei-Chung Tsai , Hau-Tieng Wu","doi":"10.1016/j.bspc.2026.109710","DOIUrl":"10.1016/j.bspc.2026.109710","url":null,"abstract":"<div><h3>Objective</h3><div>The widely used bandpass filter (BPF)-based algorithm for recovering sympathetic nerve activity (SNA) from the skin sympathetic nerve activity (SKNA −I) signal, recorded via electrocardiogram electrodes or subcutaneous sympathetic nerve activity (SCNA-I) in a lead I setup, has limitations. It excludes spectral information outside the BPF range and may retain artifacts, such as cardiac activity or pacemaker interference, in the recovered SNA (rSNA) signal. This study aims to develop an algorithm that recovers the full spectral SNA information as comprehensively as possible for evaluating the autonomic nervous system (ANS).</div></div><div><h3>Methods</h3><div>We propose a novel algorithm, S3 (<em>SNA from Shrink and Subtraction</em>), which integrates the optimal shrinkage algorithm (eOptShrink) with the template subtraction (TS) method, and make the Matlab code publicly available. The performance of S3 was evaluated against other algorithms using semi-real simulated SKNA-I data, a human SKNA-I database including subjects with pacemakers or atrial fibrillation (Af), and a mice SCNA-I database.</div></div><div><h3>Results</h3><div>The S3 algorithm demonstrated numerical efficiency and outperformed existing approaches, including traditional TS, BPF and other methods, in both time and frequency domains. Notably, in addition to the traditional 500–1000 Hz spectral band, S3 effectively recovers spectral information across the 50–300 Hz and 300–500 Hz frequency bands. All quantitative results are supported by the rSNA tracing for visual inspections.</div></div><div><h3>Conclusion</h3><div>S3 overcomes key limitations of existing methods and accurately recovers full-spectrum SNA from human SKNA-I, including cases with pacemaker and AF, as well as from mouse SCNA-I, with both theoretical justification and numerical validation. Since S3 can recover spectral information across the 50–300 Hz and 300–500 Hz frequency bands, and ECG signals in the homecare environments are typically sampled at 1–2 kHz, S3 is potentially suitable for home-based ANS evaluation.</div></div><div><h3>Significance</h3><div>S3 enables exploration of the entire SNA spectrum and shows strong potential for ANS evaluation in homecare settings.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"119 ","pages":"Article 109710"},"PeriodicalIF":4.9,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146192862","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mosquito-borne diseases are severe hazards to the health of both animals and humans. Aedes aegypti mosquitos are the primary vectors of several medically significant diseases, including dengue and Zika. Therefore, a thorough understanding of the neurons of mosquitos transmitting these diseases can be extremely beneficial in disease prevention. We hope to better comprehend the unique pattern found in considerable values of signal retrieved from mosquito neurons, known as spikes. There is currently no open-source neural spike sequence classification technique for mosquitos. To obtain outstanding outcomes, we demonstrate how to extract and classify spikes from mosquito neuron inputs using transfer learning approaches. Consequently, we highlight the role of deep pre-trained models that were trained using ImageNet weights.
The proposed methodology uses electrical spiking activity data from mosquito neurons collected with microelectrode array technology. To assess the method’s performance, data from 0, 1, 2, 3, and 7 days post-infection, reaching more than 15 million samples, were used. In this study, we also look at the influence of days post-infection on recognizing spikes in mosquito neurons.
Overall, we attempted for the first time to analyze the distinctive pattern in the spike sequence of mosquito neurons using Artificial Intelligence (AI) approaches and to determine the impact of these spikes over time.
{"title":"Spike sequences classification for dengue and Zika infections in mosquito neurons using deep pre-trained models","authors":"Danial Sharifrazi , Nouman Javed , Roohallah Alizadehsani , Prasad N. Paradkar , U.Rajendra Acharya , Asim Bhatti","doi":"10.1016/j.bspc.2026.109748","DOIUrl":"10.1016/j.bspc.2026.109748","url":null,"abstract":"<div><div>Mosquito-borne diseases are severe hazards to the health of both animals and humans. <em>Aedes aegypti</em> mosquitos are the primary vectors of several medically significant diseases, including dengue and Zika. Therefore, a thorough understanding of the neurons of mosquitos transmitting these diseases can be extremely beneficial in disease prevention. We hope to better comprehend the unique pattern found in considerable values of signal retrieved from mosquito neurons, known as spikes. There is currently no open-source neural spike sequence classification technique for mosquitos. To obtain outstanding outcomes, we demonstrate how to extract and classify spikes from mosquito neuron inputs using transfer learning approaches. Consequently, we highlight the role of deep pre-trained models that were trained using ImageNet weights.</div><div>The proposed methodology uses electrical spiking activity data from mosquito neurons collected with microelectrode array technology. To assess the method’s performance, data from 0, 1, 2, 3, and 7 days post-infection, reaching more than 15 million samples, were used. In this study, we also look at the influence of days post-infection on recognizing spikes in mosquito neurons.</div><div>Overall, we attempted for the first time to analyze the distinctive pattern in the spike sequence of mosquito neurons using Artificial Intelligence (AI) approaches and to determine the impact of these spikes over time.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"119 ","pages":"Article 109748"},"PeriodicalIF":4.9,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146191947","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-09DOI: 10.1016/j.bspc.2026.109648
Mustafain Rehman , Zhijun Liu , Miao Fan , Ahsan Humayun , Mingze Ding , Bin Liu
Objectives
Gastric cancer remains a significant public health challenge worldwide, ranked fifth in incidence and fourth in mortality among all malignant tumors. Early gastric cancer (EGC) detection is critical to improving survival rates.
Methods
We propose a new segmentation model, Dual Attention Atrous Pixel Network (DAAP-Net), designed to predict the gastric wall and stomach cavity in gastric ultrasound images. Post-segmentation, the predicted gastric wall mask extracts a region of interest (ROI) focused on the five-layer wall structure. The ROI undergoes a spatially diffused iterative enhancement (SDIE) technique to suppress intra-layer noise while preserving inter-layer transitions. We apply edge detection to the SDIE-refined ROI and compute layer thickness as pixel distances between successive edges, and normalize them into the proportion vector . A scalar deviation from the normal baseline quantifies abnormality.
Results
DAAP-Net outperforms state-of-the-art segmentation methods, achieving Intersection over Union scores of 0.7720 ± 0.0618 for normal gastric wall, 0.9007 ± 0.0495 for normal stomach cavity, 0.7607 ± 0.0780 for cancer gastric wall, and 0.8843 ± 0.0561 for cancer stomach cavity. Quantitative analysis shows gastric wall layer parameters differ markedly; the edge-derived deviation metric separates cohorts, with normal mean 0.128 and cancer mean 0.508.
Conclusions
Our research highlights structural differences between normal and cancerous gastric walls, providing a reliable and non-invasive method for EGC detection. Current limitations include manual ROI selection and occasional errors in low-contrast regions. Future work includes automated ROI selection, adding a benign-labeled cohort, a multi-center dataset, and improving model accuracy for real-time clinical applications.
{"title":"DAAP-NET: Automatic identification and quantitative analysis of gastric wall structure for cancer screening using gastric ultrasound images","authors":"Mustafain Rehman , Zhijun Liu , Miao Fan , Ahsan Humayun , Mingze Ding , Bin Liu","doi":"10.1016/j.bspc.2026.109648","DOIUrl":"10.1016/j.bspc.2026.109648","url":null,"abstract":"<div><h3>Objectives</h3><div>Gastric cancer remains a significant public health challenge worldwide, ranked fifth in incidence and fourth in mortality among all malignant tumors. Early gastric cancer (EGC) detection is critical to improving survival rates.</div></div><div><h3>Methods</h3><div>We propose a new segmentation model, Dual Attention Atrous Pixel Network (DAAP-Net), designed to predict the gastric wall and stomach cavity in gastric ultrasound images. Post-segmentation, the predicted gastric wall mask extracts a region of interest (ROI) focused on the five-layer wall structure. The ROI undergoes a spatially diffused iterative enhancement (SDIE) technique to suppress intra-layer noise while preserving inter-layer transitions. We apply edge detection to the SDIE-refined ROI and compute layer thickness as pixel distances between successive edges, and normalize them into the proportion vector <span><math><mrow><mtext>x</mtext></mrow></math></span>. A scalar deviation <span><math><mrow><mtext>d</mtext></mrow></math></span> from the normal baseline quantifies abnormality.</div></div><div><h3>Results</h3><div>DAAP-Net outperforms state-of-the-art segmentation methods, achieving Intersection over Union scores of 0.7720 ± 0.0618 for normal gastric wall, 0.9007 ± 0.0495 for normal stomach cavity, 0.7607 ± 0.0780 for cancer gastric wall, and 0.8843 ± 0.0561 for cancer stomach cavity. Quantitative analysis shows gastric wall layer parameters differ markedly; the edge-derived deviation metric <span><math><mrow><mtext>d</mtext></mrow></math></span> separates cohorts, with normal mean 0.128 and cancer mean 0.508.</div></div><div><h3>Conclusions</h3><div>Our research highlights structural differences between normal and cancerous gastric walls, providing a reliable and non-invasive method for EGC detection. Current limitations include manual ROI selection and occasional errors in low-contrast regions. Future work includes automated ROI selection, adding a benign-labeled cohort, a multi-center dataset, and improving model accuracy for real-time clinical applications.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"119 ","pages":"Article 109648"},"PeriodicalIF":4.9,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146191948","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-09DOI: 10.1016/j.bspc.2026.109758
Xing Ji , Zhong Yin , Yifei Bi , Kaiwei Yu , Yize Li , Jiafa Chen , Dawei Zhang
Fine motor decline serves as a critical early biomarker for neurodegenerative diseases like Parkinson’s disease, making its accurate assessment essential for early detection and intervention. While functional near-infrared spectroscopy (fNIRS) offers a portable, non-invasive neuroimaging solution, the precise cortical dynamics underlying varying levels of motor complexity remain underexplored. This study aims to investigate how fine motor task complexity modulates cortical activation and functional network topology. A secondary objective is to develop and validate a high-performance deep learning model to classify motor complexity levels from fNIRS signals. fNIRS data were recorded from healthy participants performing five fine-motor tasks of increasing complexity, and activation analyses were combined with graph-theoretical metrics to characterize neurophysiological responses. To classify the complexity of fine motor tasks from fNIRS signals, this study developed a bidirectional long short-term memory (Bi-LSTM) model. Performance evaluation used leave-one-out cross-validation, supplemented by multi-seed training to improve robustness. The model achieved an average classification accuracy of 90.67% ± 7.07% (95% CI: ± 2.68%) and an AUC of 0.9720 ± 0.0431, outperforming traditional support vector machine (by 21.3%) and Bi-LSTM (by 10.97%). These results demonstrate the model’s strong generalization across subjects and its ability to capture temporal-spatial patterns of cortical activation associated with increasing task complexity, providing a promising foundation for fine motor decoding and adaptive neurorehabilitation.
{"title":"Cortical network dynamics and neural decoding of fine motor complexity via fNIRS and attention-based deep learning","authors":"Xing Ji , Zhong Yin , Yifei Bi , Kaiwei Yu , Yize Li , Jiafa Chen , Dawei Zhang","doi":"10.1016/j.bspc.2026.109758","DOIUrl":"10.1016/j.bspc.2026.109758","url":null,"abstract":"<div><div>Fine motor decline serves as a critical early biomarker for neurodegenerative diseases like Parkinson’s disease, making its accurate assessment essential for early detection and intervention. While functional near-infrared spectroscopy (fNIRS) offers a portable, non-invasive neuroimaging solution, the precise cortical dynamics underlying varying levels of motor complexity remain underexplored. This study aims to investigate how fine motor task complexity modulates cortical activation and functional network topology. A secondary objective is to develop and validate a high-performance deep learning model to classify motor complexity levels from fNIRS signals. fNIRS data were recorded from healthy participants performing five fine-motor tasks of increasing complexity, and activation analyses were combined with graph-theoretical metrics to characterize neurophysiological responses. To classify the complexity of fine motor tasks from fNIRS signals, this study developed a bidirectional long short-term memory (Bi-LSTM) model. Performance evaluation used leave-one-out cross-validation, supplemented by multi-seed training to improve robustness. The model achieved an average classification accuracy of 90.67% ± 7.07% (95% CI: ± 2.68%) and an AUC of 0.9720 ± 0.0431, outperforming traditional support vector machine (by 21.3%) and Bi-LSTM (by 10.97%). These results demonstrate the model’s strong generalization across subjects and its ability to capture temporal-spatial patterns of cortical activation associated with increasing task complexity, providing a promising foundation for fine motor decoding and adaptive neurorehabilitation.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"119 ","pages":"Article 109758"},"PeriodicalIF":4.9,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146191953","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-09DOI: 10.1016/j.bspc.2026.109565
Abhijit Das , B.M. Chandrakala , N Shobha , J. Reshma , Vikranth Bhoothpur , Rakesh Kumar Godi
Asthma is a chronic respiratory disease that remains difficult to manage due to variable symptoms and diverse environmental triggers. Conventional monitoring approaches often rely on costly equipment and subjective self-reports, limiting timely interventions. Moreover, existing deep learning models suffer from issues like limited data quality, poor handling of outliers and lack of accurate risk assessment. To overcome these complications, IoT Based Air Quality Monitoring and Asthma Alerts Driven by Non-Crossing Quantile Regression Neural Networks (AM-IoT-NCQRNN) is proposed. Initially, the data is collected from Air Quality and Health Impact Dataset. Then the input data is preprocessed under Robust Maximum Correntropy Kalman Filter (RMCKF) to handle missing elements, noise and outliers. RMCKF is for its correntropy-based similarity, offering superior outlier suppression compared to median filters, low-rank imputation and standard Kalman filtering. Afterwards, the preprocessed data is given to the Non-Crossing Quantile Regression Neural Network (NCQRNN) which predicts and classifies health impact scores of asthma as very high, high, moderate, very low and low. NCQRNN applies a non-crossing quantile constraint, ensuring stable and interpretable risk estimation compared to Regression Neural Networks (RNNs) that yield inconsistent boundaries under fluctuating inputs. The proposed approach is implemented as a smartphone application, with real-time data collected through an IoT-based system using a Raspberry Pi and estimated using metrics such as accuracy, precision, recall, f1-score, specificity, ROC and computational time. Finally, the performance of proposed AM-IoT-NCQRNN method attains 19.76%, 24.00% and 19.07% higher accuracy and 29.56%, 24.22% and 28.57% higher precision when compared with existing methods.
{"title":"IoT based air quality monitoring and asthma alerts driven by non-crossing quantile regression neural networks","authors":"Abhijit Das , B.M. Chandrakala , N Shobha , J. Reshma , Vikranth Bhoothpur , Rakesh Kumar Godi","doi":"10.1016/j.bspc.2026.109565","DOIUrl":"10.1016/j.bspc.2026.109565","url":null,"abstract":"<div><div>Asthma is a chronic respiratory disease that remains difficult to manage due to variable symptoms and diverse environmental triggers. Conventional monitoring approaches often rely on costly equipment and subjective self-reports, limiting timely interventions. Moreover, existing deep learning models suffer from issues like limited data quality, poor handling of outliers and lack of accurate risk assessment. To overcome these complications, IoT Based Air Quality Monitoring and Asthma Alerts Driven by Non-Crossing Quantile Regression Neural Networks (AM-IoT-NCQRNN) is proposed. Initially, the data is collected from Air Quality and Health Impact Dataset. Then the input data is preprocessed under Robust Maximum Correntropy Kalman Filter (RMCKF) to handle missing elements, noise and outliers. RMCKF is for its correntropy-based similarity, offering superior outlier suppression compared to median filters, low-rank imputation and standard Kalman filtering. Afterwards, the preprocessed data is given to the Non-Crossing Quantile Regression Neural Network (NCQRNN) which predicts and classifies health impact scores of asthma as very high, high, moderate, very low and low. NCQRNN applies a non-crossing quantile constraint, ensuring stable and interpretable risk estimation compared to Regression Neural Networks (RNNs) that yield inconsistent boundaries under fluctuating inputs. The proposed approach is implemented as a smartphone application, with real-time data collected through an IoT-based system using a Raspberry Pi and estimated using metrics such as accuracy, precision, recall, f1-score, specificity, ROC and computational time. Finally, the performance of proposed AM-IoT-NCQRNN method attains 19.76%, 24.00% and 19.07% higher accuracy and 29.56%, 24.22% and 28.57% higher precision when compared with existing methods.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"119 ","pages":"Article 109565"},"PeriodicalIF":4.9,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146191955","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}