Inland wetlands are one of the most vulnerable ecosystems on Earth and have one of the highest rates of decline in surface and biodiversity [...]
内陆湿地是地球上最脆弱的生态系统之一，也是地表和生物多样性下降速度最快的地区之一。
{"title":"Diversity of Inland Wetlands: Important Roles in Mitigation of Human Impacts","authors":"Igor Zelnik, Mateja Germ","doi":"10.3390/d15101050","DOIUrl":"https://doi.org/10.3390/d15101050","url":null,"abstract":"Inland wetlands are one of the most vulnerable ecosystems on Earth and have one of the highest rates of decline in surface and biodiversity [...]","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135199708","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Harmful algae blooms (HABs) can have significant adverse effects on coastal ecosystems and aquaculture resiliency. We collected samples from March to August at eight different stations in Haizhou Bay (China), a region with a high frequency of HABs, and used Illumina Novaseq high-throughput sequencing and multivariate statistical analysis to characterize the bacterial communities and their relationships with different environmental factors. We identified 27 phyla, 49 classes, 158 orders, 294 families, and 522 genera. Gammaproteobacteria, Alphaproteobacteria, Bacteroidia, Acidimicrobiia, Bacilli, Actinobacteria, Cyanobacteria, Clostridia, and Acidobacteria were the most abundant classes, and Acidobacteria, Bacteroidetes, Firmicutes, Actinobacteria, Chloroflexi, Proteobacteria, and Cyanobacteria were the keystone phyla. Based on the Mantel test and redundancy analysis, temperature was the main environmental factor affecting the structure of the bacterial communities, followed by silicate, dissolved organic phosphorus (DOP), and dissolved oxygen (DO). Among the genera with high OTU abundance, Nautella was co-related positively with DO and negatively with salinity; Planktomarina was co-related positively with salinity and negatively with nitrate and nitrite. Certain families (Flavobacteriaceae, Rhodobacteraceae, and Clade_I (SAR11 clade)) and genera (Methylophaga, Alteromonas, Oleiphilus, Marinobacter, Bacillus, Nautella, and Vibrio) had associations with phytoplankton species that were responsible for HABs. This research provides new insights into the characteristics of the bacterial communities that occur in coastal areas that have HABs and provides detailed descriptions of the spatial and temporal changes in the structure of these communities.
{"title":"Seasonal and Spatial Variability in the Bacterial Diversity in Haizhou Bay in the Southern Yellow China Sea","authors":"Zhangqi Zhao, Haoyu Zhan, Tian Yan, Dechao Zhang","doi":"10.3390/d15101051","DOIUrl":"https://doi.org/10.3390/d15101051","url":null,"abstract":"Harmful algae blooms (HABs) can have significant adverse effects on coastal ecosystems and aquaculture resiliency. We collected samples from March to August at eight different stations in Haizhou Bay (China), a region with a high frequency of HABs, and used Illumina Novaseq high-throughput sequencing and multivariate statistical analysis to characterize the bacterial communities and their relationships with different environmental factors. We identified 27 phyla, 49 classes, 158 orders, 294 families, and 522 genera. Gammaproteobacteria, Alphaproteobacteria, Bacteroidia, Acidimicrobiia, Bacilli, Actinobacteria, Cyanobacteria, Clostridia, and Acidobacteria were the most abundant classes, and Acidobacteria, Bacteroidetes, Firmicutes, Actinobacteria, Chloroflexi, Proteobacteria, and Cyanobacteria were the keystone phyla. Based on the Mantel test and redundancy analysis, temperature was the main environmental factor affecting the structure of the bacterial communities, followed by silicate, dissolved organic phosphorus (DOP), and dissolved oxygen (DO). Among the genera with high OTU abundance, Nautella was co-related positively with DO and negatively with salinity; Planktomarina was co-related positively with salinity and negatively with nitrate and nitrite. Certain families (Flavobacteriaceae, Rhodobacteraceae, and Clade_I (SAR11 clade)) and genera (Methylophaga, Alteromonas, Oleiphilus, Marinobacter, Bacillus, Nautella, and Vibrio) had associations with phytoplankton species that were responsible for HABs. This research provides new insights into the characteristics of the bacterial communities that occur in coastal areas that have HABs and provides detailed descriptions of the spatial and temporal changes in the structure of these communities.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":"22 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135247358","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Parabathynellidae is a family well known for its diversity and is endemic to the interstitial hyporheic zone of South Korea. Two new parabathynellid species, Nipponbathynella yeongchunensis sp. nov. and N. gapcheonensis sp. nov., were found through groundwater sampling on riverbanks in South Korea. Nipponbathynella yeongchunensis sp. nov. can be distinguished from its congeners by the base socket of the two dorsal setae on the antennule’s first segment. Nipponbathynella gapcheonensis sp. nov. can be distinguished by the protopod of thoracopod II–IV with hairs. We provide morphological descriptions and remarks about the two new species with molecular information based on 18S rRNA and partial COI gene sequences. In addition, phylogenetic analysis, including Nipponbathynella Schminke, 1973, which had not been previously molecularly evaluated, was inferred. The results of the 18S rRNA gene phylogeny suggest a close relationship between the genera Nipponbathynella and Arisubathynella, as well as Europe–North American genera. We have also included a brief discussion and an identification key for the five known parabathynellid genera found in South Korea.
{"title":"Two New Species of Nipponbathynella Schminke, 1973 from South Korea, with a Brief Discussion on Korean Parabathynellid Genera (Crustacea, Bathynellacea)","authors":"Su-Jung Ji, Gi-Sik Min","doi":"10.3390/d15101052","DOIUrl":"https://doi.org/10.3390/d15101052","url":null,"abstract":"Parabathynellidae is a family well known for its diversity and is endemic to the interstitial hyporheic zone of South Korea. Two new parabathynellid species, Nipponbathynella yeongchunensis sp. nov. and N. gapcheonensis sp. nov., were found through groundwater sampling on riverbanks in South Korea. Nipponbathynella yeongchunensis sp. nov. can be distinguished from its congeners by the base socket of the two dorsal setae on the antennule’s first segment. Nipponbathynella gapcheonensis sp. nov. can be distinguished by the protopod of thoracopod II–IV with hairs. We provide morphological descriptions and remarks about the two new species with molecular information based on 18S rRNA and partial COI gene sequences. In addition, phylogenetic analysis, including Nipponbathynella Schminke, 1973, which had not been previously molecularly evaluated, was inferred. The results of the 18S rRNA gene phylogeny suggest a close relationship between the genera Nipponbathynella and Arisubathynella, as well as Europe–North American genera. We have also included a brief discussion and an identification key for the five known parabathynellid genera found in South Korea.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":"3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135247359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ketut Wikantika, Mochamad Firman Ghazali, Fenny M. Dwivany, Tri Muji Susantoro, Lissa Nur Fajri, Diah Sunarwati, Agus Sutanto
Knowledge of the health of banana trees is critical for farmers in order to profit from banana cultivation. Fusarium wilt and banana blood disease (BBD), two significant diseases that infect banana trees, are caused by Fusarium oxysporum and Ralstonia syzygii, respectively. They have caused a decline in crop yield, as they destroy trees, starting sequentially from the pseudostem to the fruit. The entire distribution of BBD and fusarium on a plantation can be understood using advanced geospatial information obtained from multispectral aerial photographs taken using unmanned aerial vehicles (UAVs) and a reliable data field for infected trees. Vegetation and soil indices derived from multispectral aerial photographs, such as the normalized difference vegetation index, the modified chlorophyll absorption ratio index, the normalized difference water index (NDWI), and soil pH, may have to be relied upon to explain the precise location of these two diseases. This study used a random forest algorithm to handle a large dataset consisting of multispectral and spectral models. The results show that the soil indices, soil pH, and NDWI are the most important variables for predicting the spatial distribution of these two diseases. Simultaneously, the plantation area affected by BBD is more extensive than that affected by fusarium if variations in planted banana cultivars are not considered.
{"title":"A Study on the Distribution Pattern of Banana Blood Disease (BBD) and Fusarium Wilt Using Multispectral Aerial Photos and a Handheld Spectrometer in Subang, Indonesia","authors":"Ketut Wikantika, Mochamad Firman Ghazali, Fenny M. Dwivany, Tri Muji Susantoro, Lissa Nur Fajri, Diah Sunarwati, Agus Sutanto","doi":"10.3390/d15101046","DOIUrl":"https://doi.org/10.3390/d15101046","url":null,"abstract":"Knowledge of the health of banana trees is critical for farmers in order to profit from banana cultivation. Fusarium wilt and banana blood disease (BBD), two significant diseases that infect banana trees, are caused by Fusarium oxysporum and Ralstonia syzygii, respectively. They have caused a decline in crop yield, as they destroy trees, starting sequentially from the pseudostem to the fruit. The entire distribution of BBD and fusarium on a plantation can be understood using advanced geospatial information obtained from multispectral aerial photographs taken using unmanned aerial vehicles (UAVs) and a reliable data field for infected trees. Vegetation and soil indices derived from multispectral aerial photographs, such as the normalized difference vegetation index, the modified chlorophyll absorption ratio index, the normalized difference water index (NDWI), and soil pH, may have to be relied upon to explain the precise location of these two diseases. This study used a random forest algorithm to handle a large dataset consisting of multispectral and spectral models. The results show that the soil indices, soil pH, and NDWI are the most important variables for predicting the spatial distribution of these two diseases. Simultaneously, the plantation area affected by BBD is more extensive than that affected by fusarium if variations in planted banana cultivars are not considered.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":"35 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135199929","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lewis Ngoy Kalumba, Emmanuel Abwe, Frederic D. B. Schedel, Auguste Chocha Manda, Ulrich K. Schliewen, Emmanuel J. W. M. N. Vreven
Two new Kneria species, K. luansaensis sp. nov. and K. maxi sp. nov., are described from the Luansa River, a left bank tributary of the lower Luapula in the Bangweulu–Mweru ecoregion, based on an integrative approach using morphological and COI barcoding evidence. While K. luansaensis sp. nov. occurs from the source of the Luansa further downstream to above the last of the three Sanshifolo Falls, K. maxi sp. nov. only occurs downstream of all these three major falls. In Kneria, males of about ≥ 33 mm LS have an opercular and a postopercular organ. The number of lamellae on the latter seems to contain some alpha-taxonomic information, although this requires further study as allometric changes occur at about ≤ 45 mm LS. Additional external morphological characters differ between sexes, i.e., the (i) pectoral fin width (wider in males than females), (ii) dorsal fin height (longer in males than females), and (iii) length of the longest ray of the lower caudal fin lobe (longer in males than females). Agriculture, fishing with ichthyotoxines, and logging are the most pressing threats on the Luansa and thus to both the new species. Their discovery in one of the rivers of the Kundelungu Plateau and its surroundings located outside the present-day boundaries of the Kundelungu National Park highlights the need for a refined and improved protection strategy for this freshwater key biodiversity area.
基于形态学和COI条形码证据的综合方法，在Bangweulu-Mweru生态区Luapula下游左岸支流Luansa河中描述了两个新的Kneria物种K. luansaensis sp. nov和K. maxi sp. nov。栾山桫椤主要分布在栾山山源下游至三石佛洛大瀑布最后一个瀑布的上游，而大桫椤只分布在这三个大瀑布的下游。在Kneria，雄性≥33 mm LS有一个眼周和眼周后器官。后者的片层数量似乎包含一些α分类信息，尽管这需要进一步研究，因为异速生长变化发生在≤45 mm LS处。其他的外部形态特征在两性之间也存在差异，即(i)胸鳍宽度(雄性比雌性宽)，(ii)背鳍高度(雄性比雌性长)，(iii)下尾鳍最长线的长度(雄性比雌性长)。农业、使用鱼毒素的捕捞和伐木是对罗安萨和这两个新物种最紧迫的威胁。它们是在昆德隆古高原的一条河流及其周边地区发现的，该地区位于昆德隆古国家公园目前的边界之外，这突显了对这一淡水关键生物多样性地区制定完善和改进保护策略的必要性。
{"title":"Two New Shellear Species (Gonorhynchiformes: Kneriidae), from the Luansa River (Upper Congo Basin): Hidden Diversity Revealed by Integrative Taxonomy","authors":"Lewis Ngoy Kalumba, Emmanuel Abwe, Frederic D. B. Schedel, Auguste Chocha Manda, Ulrich K. Schliewen, Emmanuel J. W. M. N. Vreven","doi":"10.3390/d15101044","DOIUrl":"https://doi.org/10.3390/d15101044","url":null,"abstract":"Two new Kneria species, K. luansaensis sp. nov. and K. maxi sp. nov., are described from the Luansa River, a left bank tributary of the lower Luapula in the Bangweulu–Mweru ecoregion, based on an integrative approach using morphological and COI barcoding evidence. While K. luansaensis sp. nov. occurs from the source of the Luansa further downstream to above the last of the three Sanshifolo Falls, K. maxi sp. nov. only occurs downstream of all these three major falls. In Kneria, males of about ≥ 33 mm LS have an opercular and a postopercular organ. The number of lamellae on the latter seems to contain some alpha-taxonomic information, although this requires further study as allometric changes occur at about ≤ 45 mm LS. Additional external morphological characters differ between sexes, i.e., the (i) pectoral fin width (wider in males than females), (ii) dorsal fin height (longer in males than females), and (iii) length of the longest ray of the lower caudal fin lobe (longer in males than females). Agriculture, fishing with ichthyotoxines, and logging are the most pressing threats on the Luansa and thus to both the new species. Their discovery in one of the rivers of the Kundelungu Plateau and its surroundings located outside the present-day boundaries of the Kundelungu National Park highlights the need for a refined and improved protection strategy for this freshwater key biodiversity area.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":"66 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135387523","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Invasive species are one of the most serious threats to biodiversity. Pomacea canaliculata is considered one of the world’s 100 worst invasive species. Major determinants of invasive species distribution are their environmental tolerances, and an understanding of correlations between local environmental variables (e.g., pH, concentration of dissolved oxygen) and genetic diversity is necessary to better prevent and manage the spread of invasive species. However, while such studies have demonstrated associations between the distribution and density of P. canaliculata and water quality correlates, the principal mechanisms relating genetic and these environmental correlates have not been fully articulated. Here, the correlation between physicochemical parameters and genetics of P. canaliculata were analyzed. The results showed that P. canaliculata among the six collection locations had robust genetic diversity, significant genetic differentiation, limited gene flow, and stable population dynamics. RDA analysis showed that genetic variation in P. canaliculata was significantly correlated with concentration of dissolved oxygen and pH. These results will provide a basis for effectively preventing and managing the spread of invasive species and identifying which habitats may be more at risk of invasion.
{"title":"Environmental Correlates to Genetic Diversity and Structure in Invasive Apple Snail (Pomacea canaliculata) Populations in China","authors":"Xiongjun Liu, Yu Zhou, Shan Ouyang, Xiaoping Wu","doi":"10.3390/d15101048","DOIUrl":"https://doi.org/10.3390/d15101048","url":null,"abstract":"Invasive species are one of the most serious threats to biodiversity. Pomacea canaliculata is considered one of the world’s 100 worst invasive species. Major determinants of invasive species distribution are their environmental tolerances, and an understanding of correlations between local environmental variables (e.g., pH, concentration of dissolved oxygen) and genetic diversity is necessary to better prevent and manage the spread of invasive species. However, while such studies have demonstrated associations between the distribution and density of P. canaliculata and water quality correlates, the principal mechanisms relating genetic and these environmental correlates have not been fully articulated. Here, the correlation between physicochemical parameters and genetics of P. canaliculata were analyzed. The results showed that P. canaliculata among the six collection locations had robust genetic diversity, significant genetic differentiation, limited gene flow, and stable population dynamics. RDA analysis showed that genetic variation in P. canaliculata was significantly correlated with concentration of dissolved oxygen and pH. These results will provide a basis for effectively preventing and managing the spread of invasive species and identifying which habitats may be more at risk of invasion.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":"34 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135425081","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
During a survey of the Wando-gun rockpool area in Korea, two species belonging to the family Cyatholaimidae were discovered within a sponge, Hymeniacidon sinapium, and are hereby reported. Despite the monophyletic nature of the family Cyatholaimidae, it has been a topic of discussion among nematologists due to its lack of synapomorphic characteristics and overlapping generic diagnoses. Many genus-defining features consist of a combination of non-unique characters, which may not hold significant taxonomic importance. Consequently, most genera within the family are non-monophyletic according to phylogenetic findings. The absence of molecular data complicates the identification of taxonomically important characteristics that may have been previously overlooked. While the pore complex and the lateral pore-like structure have been suggested as potentially important traits, these insights are lacking in most recorded species, along with molecular data to confirm their significance in topology. Given the considerable amount of work required from the ground up, this study provides both morphological information (including taxonomic description, morphometric measurements, tabular key comparing key features to all valid congeners, illustration, and microscope photographs) and molecular data (partial sequences of three molecular regions, K2P distance comparison, and phylogenetic trees) for the two species discovered in Korea. The study also offers insights on potentially significant traits, such as the pore complex and other pore structures. The Korean specimen of Acanthonchus (Seuratiella) tridentatus resembles the original description regarding aspects such as the number and type of precloacal supplements, as well as the shape of the spicules and gubernaculum. However, variations are observed in the following characteristics: body ratio, nerve ring location, pharynx length, and the presence or absence of the oscelli. Our partial molecular sequences of the specimens also match identically with a single existing entry on NCBI identified as A. (S.) tridentatus. The new species, Paracanthonchus spongius sp. nov., is most similar to P. kamui in terms of the general shape of the body and gubernaculum but can be distinguished by differences in the number of precloacal supplements, amphid position, and gubernaculum ratio. The phylogenetic tree constructed based on the 28S rRNA region shows both species grouped within the monophyletic clade of Cyatholaimidae with high bootstrap support. However, achieving generic resolution of these species will require more molecular sequences of congeners to accumulate in the future.
在韩国莞岛郡岩池地区的一次调查中，在海绵Hymeniacidon sinapium中发现了两个属于Cyatholaimidae科的物种，特此报告。尽管Cyatholaimidae家族具有单系性，但由于缺乏突触形态特征和重叠的一般诊断，它一直是线虫学家讨论的话题。许多定义属的特征由非唯一特征的组合组成，这些特征在分类学上可能不具有重要意义。因此，根据系统发育的发现，这个家族中的大多数属都是非单系的。分子数据的缺乏使鉴定分类学上重要的特征变得复杂，这些特征以前可能被忽视了。虽然孔隙复合体和侧孔样结构被认为是潜在的重要特征，但在大多数记录的物种中缺乏这些见解，也缺乏分子数据来证实它们在拓扑结构中的重要性。考虑到从基础开始需要大量的工作，本研究提供了在韩国发现的两个物种的形态学信息(包括分类描述、形态测量、将关键特征与所有有效同源物进行表格键比较、插图和显微镜照片)和分子数据(三个分子区域的部分序列、K2P距离比较和系统发育树)。该研究还为潜在的重要特征提供了见解，例如孔隙复合体和其他孔隙结构。三叉棘虫的韩国标本与原始的描述相似，如囊前补充物的数量和类型，以及针状体和管骨的形状。然而，观察到以下特征的变化:身体比例，神经环位置，咽长度以及存在或不存在oscelli。我们的部分分子序列也与NCBI上现有的一个单条目一致，该条目被鉴定为a (s) tridentatus。新种Paracanthonchus spongius sp. nov.与p.a kamui在身体和管膜的一般形状上最相似，但可以通过粪囊前补体的数量、两栖动物的位置和管膜比例的差异来区分。基于28S rRNA区域构建的系统发育树显示，这两个物种都属于高自举支持的单系进化分支。然而，要实现这些物种的属型分辨，未来还需要积累更多的同源分子序列。
{"title":"Two Species of the Family Cyatholaimidae (Nematoda: Chromadorida) from Korea","authors":"Hyeonggeun Kim, Raehyuk Jeong","doi":"10.3390/d15101047","DOIUrl":"https://doi.org/10.3390/d15101047","url":null,"abstract":"During a survey of the Wando-gun rockpool area in Korea, two species belonging to the family Cyatholaimidae were discovered within a sponge, Hymeniacidon sinapium, and are hereby reported. Despite the monophyletic nature of the family Cyatholaimidae, it has been a topic of discussion among nematologists due to its lack of synapomorphic characteristics and overlapping generic diagnoses. Many genus-defining features consist of a combination of non-unique characters, which may not hold significant taxonomic importance. Consequently, most genera within the family are non-monophyletic according to phylogenetic findings. The absence of molecular data complicates the identification of taxonomically important characteristics that may have been previously overlooked. While the pore complex and the lateral pore-like structure have been suggested as potentially important traits, these insights are lacking in most recorded species, along with molecular data to confirm their significance in topology. Given the considerable amount of work required from the ground up, this study provides both morphological information (including taxonomic description, morphometric measurements, tabular key comparing key features to all valid congeners, illustration, and microscope photographs) and molecular data (partial sequences of three molecular regions, K2P distance comparison, and phylogenetic trees) for the two species discovered in Korea. The study also offers insights on potentially significant traits, such as the pore complex and other pore structures. The Korean specimen of Acanthonchus (Seuratiella) tridentatus resembles the original description regarding aspects such as the number and type of precloacal supplements, as well as the shape of the spicules and gubernaculum. However, variations are observed in the following characteristics: body ratio, nerve ring location, pharynx length, and the presence or absence of the oscelli. Our partial molecular sequences of the specimens also match identically with a single existing entry on NCBI identified as A. (S.) tridentatus. The new species, Paracanthonchus spongius sp. nov., is most similar to P. kamui in terms of the general shape of the body and gubernaculum but can be distinguished by differences in the number of precloacal supplements, amphid position, and gubernaculum ratio. The phylogenetic tree constructed based on the 28S rRNA region shows both species grouped within the monophyletic clade of Cyatholaimidae with high bootstrap support. However, achieving generic resolution of these species will require more molecular sequences of congeners to accumulate in the future.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":"23 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135425512","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tatiana A. Belevich, Irina A. Milyutina, Aleksey V. Troitsky
Single-cell cyanobacteria, being an integral part of picoplankton in marine ecosystems, have been suggested to be important contributors to primary production and carbon cycles in the global ocean. The spatial distribution, abundance and diversity of natural communities of picocyanobacteria (PC) in estuaries of Khatanga, Indigirka and Kolyma rivers and adjacent shelves of the Laptev and East Siberian seas were studied in September 2017. The PC concentrations were higher in the estuaries than in the shelf stations of the seas. The abundance of PC was 1.25 × 106 cells/L, 0.42 × 106 cells/L and 1.58 × 106 cells/L in the surface layer of Khatanga, Indigirka and Kolyma estuaries, respectively. The contribution of PC to total autumn picophytoplankton abundance averaged 6% and 3% in the Khatanga and Indigirka estuaries and reached 5% in the Kolyma estuary. Phylogenetic analysis of the 16S rRNA gene and ITS region clone libraries revealed picocyanobacterial sequences related to marine Synechococcus subclusters 5.1-I, 5.2 and 5.3. Of the phylotypes from Synechococcus S5.1-I and S5.2 that were found, only several were discovered earlier, while the remaining clones were unique. Two groups of phylotypes (clades A and E) were found that were not closely similar to those previously described in both marine and freshwater habitats. It can be expected that a more detailed study of the phytoplankton of the Arctic seas will further expand our understanding of the diversity of these key components of the food chains of oceanic biocenoses.
{"title":"Picocyanobacteria in Estuaries of Three Siberian Rivers and Adjacent Shelves of Russian Arctic Seas: Genetic Diversity and Distribution","authors":"Tatiana A. Belevich, Irina A. Milyutina, Aleksey V. Troitsky","doi":"10.3390/d15101049","DOIUrl":"https://doi.org/10.3390/d15101049","url":null,"abstract":"Single-cell cyanobacteria, being an integral part of picoplankton in marine ecosystems, have been suggested to be important contributors to primary production and carbon cycles in the global ocean. The spatial distribution, abundance and diversity of natural communities of picocyanobacteria (PC) in estuaries of Khatanga, Indigirka and Kolyma rivers and adjacent shelves of the Laptev and East Siberian seas were studied in September 2017. The PC concentrations were higher in the estuaries than in the shelf stations of the seas. The abundance of PC was 1.25 × 106 cells/L, 0.42 × 106 cells/L and 1.58 × 106 cells/L in the surface layer of Khatanga, Indigirka and Kolyma estuaries, respectively. The contribution of PC to total autumn picophytoplankton abundance averaged 6% and 3% in the Khatanga and Indigirka estuaries and reached 5% in the Kolyma estuary. Phylogenetic analysis of the 16S rRNA gene and ITS region clone libraries revealed picocyanobacterial sequences related to marine Synechococcus subclusters 5.1-I, 5.2 and 5.3. Of the phylotypes from Synechococcus S5.1-I and S5.2 that were found, only several were discovered earlier, while the remaining clones were unique. Two groups of phylotypes (clades A and E) were found that were not closely similar to those previously described in both marine and freshwater habitats. It can be expected that a more detailed study of the phytoplankton of the Arctic seas will further expand our understanding of the diversity of these key components of the food chains of oceanic biocenoses.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":"134 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135425773","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kaikai Dong, Ziqi Chen, Ying Li, Guanglei Hou, Zhaoli Liu
The central government of China encourages enthusiasm for biodiversity conservation by implementing a transfer payment policy targeted at Biodiversity National Key Ecological Functional Areas at the county scale. Biodiversity National Key Ecological Functional Areas are types of PAs that were designated by the State Council of China for the implementation of biodiversity conservation. However, regional comparative assessment results of biodiversity conservation effectiveness in different county-level administrative units are still lacking. In this study, we developed a reference condition index to represent the ecological background, and we then constructed a conservation effectiveness index to compare the conservation efforts among 131 counties in seven Biodiversity National Key Ecological Functional Areas. The results showed the following: (1) The biological background could be well reflected by the reference condition index. The Tropical Rainforest Ecological Function Area in Mountain Areas in the Middle of Hainan Island had the best biological background, while the Desert Ecological Function Area on the Northwest Qiangtang Plateau had the worst. (2) The biodiversity conservation effectiveness of the Desert Ecological Function Area on the Northwest Qiangtang Plateau was the best, and that of the Wetland Ecological Function Area of the Three River Plain was worst. (3) Among the 131 counties, Taibai County in the Biodiversity Ecological Function Area of Qinba Mountain performed best, while Fujin City in the Wetland Ecological Function Area of the Three River Plain performed worst. Our study could provide valuable insights for the transfer payment. Meanwhile, it can also supply a scientific reference for the management of Biodiversity National Key Ecological Functional Areas to enhance biodiversity.
{"title":"Comparing the Effectiveness of Biodiversity Conservation across Different Regions at County Scale","authors":"Kaikai Dong, Ziqi Chen, Ying Li, Guanglei Hou, Zhaoli Liu","doi":"10.3390/d15101043","DOIUrl":"https://doi.org/10.3390/d15101043","url":null,"abstract":"The central government of China encourages enthusiasm for biodiversity conservation by implementing a transfer payment policy targeted at Biodiversity National Key Ecological Functional Areas at the county scale. Biodiversity National Key Ecological Functional Areas are types of PAs that were designated by the State Council of China for the implementation of biodiversity conservation. However, regional comparative assessment results of biodiversity conservation effectiveness in different county-level administrative units are still lacking. In this study, we developed a reference condition index to represent the ecological background, and we then constructed a conservation effectiveness index to compare the conservation efforts among 131 counties in seven Biodiversity National Key Ecological Functional Areas. The results showed the following: (1) The biological background could be well reflected by the reference condition index. The Tropical Rainforest Ecological Function Area in Mountain Areas in the Middle of Hainan Island had the best biological background, while the Desert Ecological Function Area on the Northwest Qiangtang Plateau had the worst. (2) The biodiversity conservation effectiveness of the Desert Ecological Function Area on the Northwest Qiangtang Plateau was the best, and that of the Wetland Ecological Function Area of the Three River Plain was worst. (3) Among the 131 counties, Taibai County in the Biodiversity Ecological Function Area of Qinba Mountain performed best, while Fujin City in the Wetland Ecological Function Area of the Three River Plain performed worst. Our study could provide valuable insights for the transfer payment. Meanwhile, it can also supply a scientific reference for the management of Biodiversity National Key Ecological Functional Areas to enhance biodiversity.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":"2016 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135386934","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Phosphorus (P) is an essential macronutrient crucial for both plant growth and crop production, playing a pivotal role in agriculture since the early 20th century. The symbiotic relationship between AMF and plants serves as a classic illustration. These fungi play a regulatory role in the growth and development of plants, especially in facilitating the absorption of P and carbon molecules by plants. While there has been a growing body of research on the community assembly of arbuscular mycorrhizal fungi (AMF) in recent decades, our knowledge of the processes governing the coexistence of these AMF communities influenced by P in agroecosystems remains limited. To investigate the impact of various P fertilizers on AMF communities in temperate agroecosystems, this study was conducted using soils sourced from wheat–maize rotation farmland at Henan Agricultural University Yuanyang Base. With the Illumina MiSeq high-throughput sequencing technique, we systematically examined the taxonomic composition of soil AMF at the Yuanyang Base of Henan Agricultural University in a wheat–maize rotation agricultural field. Our primary objective was to unravel the mechanisms behind AMF community assembly and stability under varying P gradient fertilization conditions. Nonmetric Multidimensional Scaling (NMDS) analysis revealed significant differences among AMF communities in field soil subjected to various treatments (p < 0.05). A torus translations test demonstrated positive associations with the three treatments in 36 out of the 51 examined AMF operational taxonomic units (OTUs), making up 70.59% (p < 0.05) of the results. Furthermore, 37.84% (14/37) of the OTUs displayed preferences for the low P concentration treatment, while 34.29% (12/35) and 32.26% (10/31) favored medium and high P concentrations, respectively. An analysis of the Normalized Stochasticity Ratio (NST) and Checkerboard Score (C-score) indicated that in temperate agroecosystems, deterministic processes predominantly governed AMF in all treatment groups, with high P conditions exerting a stronger influence than low or medium P conditions. This study underscores the profound impact of long-term P fertilizer application on AMF community structures within temperate agricultural systems employing wheat–maize rotation. Additionally, it highlights the dominant role played by deterministic processes in shaping the assembly of AMF communities in these temperate agricultural systems that use P fertilizers. These findings emphasize the need for balanced nutrient management, particularly concerning P, to ensure the stability of AMF communities.
{"title":"The Addition of a High Concentration of Phosphorus Reduces the Diversity of Arbuscular Mycorrhizal Fungi in Temperate Agroecosystems","authors":"Feng Miao, Senlin Wang, Yuxiang Yuan, Yun Chen, Erhui Guo, Yuan Li","doi":"10.3390/d15101045","DOIUrl":"https://doi.org/10.3390/d15101045","url":null,"abstract":"Phosphorus (P) is an essential macronutrient crucial for both plant growth and crop production, playing a pivotal role in agriculture since the early 20th century. The symbiotic relationship between AMF and plants serves as a classic illustration. These fungi play a regulatory role in the growth and development of plants, especially in facilitating the absorption of P and carbon molecules by plants. While there has been a growing body of research on the community assembly of arbuscular mycorrhizal fungi (AMF) in recent decades, our knowledge of the processes governing the coexistence of these AMF communities influenced by P in agroecosystems remains limited. To investigate the impact of various P fertilizers on AMF communities in temperate agroecosystems, this study was conducted using soils sourced from wheat–maize rotation farmland at Henan Agricultural University Yuanyang Base. With the Illumina MiSeq high-throughput sequencing technique, we systematically examined the taxonomic composition of soil AMF at the Yuanyang Base of Henan Agricultural University in a wheat–maize rotation agricultural field. Our primary objective was to unravel the mechanisms behind AMF community assembly and stability under varying P gradient fertilization conditions. Nonmetric Multidimensional Scaling (NMDS) analysis revealed significant differences among AMF communities in field soil subjected to various treatments (p < 0.05). A torus translations test demonstrated positive associations with the three treatments in 36 out of the 51 examined AMF operational taxonomic units (OTUs), making up 70.59% (p < 0.05) of the results. Furthermore, 37.84% (14/37) of the OTUs displayed preferences for the low P concentration treatment, while 34.29% (12/35) and 32.26% (10/31) favored medium and high P concentrations, respectively. An analysis of the Normalized Stochasticity Ratio (NST) and Checkerboard Score (C-score) indicated that in temperate agroecosystems, deterministic processes predominantly governed AMF in all treatment groups, with high P conditions exerting a stronger influence than low or medium P conditions. This study underscores the profound impact of long-term P fertilizer application on AMF community structures within temperate agricultural systems employing wheat–maize rotation. Additionally, it highlights the dominant role played by deterministic processes in shaping the assembly of AMF communities in these temperate agricultural systems that use P fertilizers. These findings emphasize the need for balanced nutrient management, particularly concerning P, to ensure the stability of AMF communities.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":"48 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135387291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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