Oksana A. Korzhavina, Darya Y. Grishina, Xingru Chen, Diego Fontaneto, Viatcheslav N. Ivanenko
This research provides an extensive analysis of the biodiversity and distribution patterns of copepod crustaceans associated with octocoral species. A comprehensive dataset comprising 966 records pertaining to 233 copepod species, encompassing 54 genera, 18 families, and 3 orders, was compiled from 92 scientific papers published between 1858 and 2023, and updated as open data to GBIF. These copepods were found to be closely associated with 183 octocoral species, representing 72 genera and 28 families. The analysis revealed a total of 393 distinct interspecific associations between copepods, classified under the orders Cyclopoida, Harpacticoida, and Siphonostomatoida, and diverse octocorals. Approximately 60% of these associations were reported only once in the literature, which poses challenges to assessing the level of host specificity among the majority of copepod species linked with octocorals. Notably, over 91% of the recorded copepod species were found at depths not exceeding 30 m, with only four copepod species reported at greater depths surpassing 500 m. The presence of these symbiotic copepods was documented across 215 sampling sites situated within 8 of the 12 defined marine ecoregions, with particular attention to the Western Indo-Pacific, Central Indo-Pacific, and Temperate Northern regions. Despite the comprehensive examination of available data, this study highlights substantial gaps in our comprehension of copepod crustacean diversity and distribution in association with octocorals. Moreover, crucial information concerning symbiotic copepods is conspicuously absent for approximately 94% of potential octocoral host species. These disparities emphasize the imperative need for further scientific inquiry to unveil the intricacies of symbiotic relationships and to contribute to a more holistic understanding of copepod–octocoral associations.
{"title":"Diving into Diversity: Copepod Crustaceans in Octocoral Associations","authors":"Oksana A. Korzhavina, Darya Y. Grishina, Xingru Chen, Diego Fontaneto, Viatcheslav N. Ivanenko","doi":"10.3390/d15111140","DOIUrl":"https://doi.org/10.3390/d15111140","url":null,"abstract":"This research provides an extensive analysis of the biodiversity and distribution patterns of copepod crustaceans associated with octocoral species. A comprehensive dataset comprising 966 records pertaining to 233 copepod species, encompassing 54 genera, 18 families, and 3 orders, was compiled from 92 scientific papers published between 1858 and 2023, and updated as open data to GBIF. These copepods were found to be closely associated with 183 octocoral species, representing 72 genera and 28 families. The analysis revealed a total of 393 distinct interspecific associations between copepods, classified under the orders Cyclopoida, Harpacticoida, and Siphonostomatoida, and diverse octocorals. Approximately 60% of these associations were reported only once in the literature, which poses challenges to assessing the level of host specificity among the majority of copepod species linked with octocorals. Notably, over 91% of the recorded copepod species were found at depths not exceeding 30 m, with only four copepod species reported at greater depths surpassing 500 m. The presence of these symbiotic copepods was documented across 215 sampling sites situated within 8 of the 12 defined marine ecoregions, with particular attention to the Western Indo-Pacific, Central Indo-Pacific, and Temperate Northern regions. Despite the comprehensive examination of available data, this study highlights substantial gaps in our comprehension of copepod crustacean diversity and distribution in association with octocorals. Moreover, crucial information concerning symbiotic copepods is conspicuously absent for approximately 94% of potential octocoral host species. These disparities emphasize the imperative need for further scientific inquiry to unveil the intricacies of symbiotic relationships and to contribute to a more holistic understanding of copepod–octocoral associations.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134901357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Gabrielle Zammit, Maria G. Zammit, Kyle G. Buttigieg
Until recently, the study of cyanobacteria and microalgae has been hampered by the need to cultivate these organisms to gain insight into their cytomorphology, life cycle and molecular biology. However, various microbial species characterized by thick sheaths of exopolymeric substances were difficult to isolate in culture due to their associated symbiotic bacteria. Other microbes evaded culture. Such challenges have now been overcome by the development of metagenomic techniques that allow direct DNA sequencing from environmental samples, as well as high resolution microscopy techniques that permit direct imaging of environmental samples. The sampling of understudied taxa from extreme environments and of toxic species has been facilitated by specialized robotic equipment. Single-cell sequencing has allowed for the proper characterization of microalgal species and their response to environmental changes. Various strains of cyanobacteria, microalgae and macroalgae have gained renewed interest for their high-value metabolites. This paper provides an overview of the emerging technologies and explains how they are being used to identify such strains and their products for industrial application. Advances in genetic engineering and CRISPR technology have facilitated the production of strains that are more amenable to culture, metabolite extraction, scale-up and application in biorefinery approaches. Emerging analytical techniques are discussed, with the advent of multiomics and its application in this field.
{"title":"Emerging Technologies for the Discovery of Novel Diversity in Cyanobacteria and Algae and the Elucidation of Their Valuable Metabolites","authors":"Gabrielle Zammit, Maria G. Zammit, Kyle G. Buttigieg","doi":"10.3390/d15111142","DOIUrl":"https://doi.org/10.3390/d15111142","url":null,"abstract":"Until recently, the study of cyanobacteria and microalgae has been hampered by the need to cultivate these organisms to gain insight into their cytomorphology, life cycle and molecular biology. However, various microbial species characterized by thick sheaths of exopolymeric substances were difficult to isolate in culture due to their associated symbiotic bacteria. Other microbes evaded culture. Such challenges have now been overcome by the development of metagenomic techniques that allow direct DNA sequencing from environmental samples, as well as high resolution microscopy techniques that permit direct imaging of environmental samples. The sampling of understudied taxa from extreme environments and of toxic species has been facilitated by specialized robotic equipment. Single-cell sequencing has allowed for the proper characterization of microalgal species and their response to environmental changes. Various strains of cyanobacteria, microalgae and macroalgae have gained renewed interest for their high-value metabolites. This paper provides an overview of the emerging technologies and explains how they are being used to identify such strains and their products for industrial application. Advances in genetic engineering and CRISPR technology have facilitated the production of strains that are more amenable to culture, metabolite extraction, scale-up and application in biorefinery approaches. Emerging analytical techniques are discussed, with the advent of multiomics and its application in this field.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134991685","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Vitalii Demeshkant, Michał Biegalski, Leonid Rekovets
This paper presents historical and evolutionary insights into the “tarpan” group of small horses by examining molar tooth enamel ultrastructure. Mathematical methodologies were applied to enhance the analysis. Tooth enamel from species such as Equus gmelini (tarpan), E. latipes, and E. hydruntinus from Pleistocene Ukrainian localities, E. przewalskii from the Chornobyl Exclusion Zone in Ukraine, and E. caballus form sylvaticus (Polish konik) from Roztocze National Park, Poland, underwent scanning microscope examination. Measurements of enamel structures, including prisms (PE) and interprismatic matrix (IPM), were conducted, with the K-index used as their ratio, categorized by enamel type (I, II, III). The findings confirmed that the crystal structures of enamel in these horse groups vary based on genus evolution, diet, and environmental conditions, shaping the enamel’s morphological features. Through analysis, clusters were identified, allowing for potential reconstructions of relationships among study groups. The results revealed distinct differences between species, enabling their classification within an established phenogram. Two primary clusters emerged: one consisting of extinct small horse forms from diverse localities and another grouping modern forms. Notably, the Late Pleistocene European species E. latipes showed close affinities to the latter cluster.
本文通过对马臼齿牙釉质超微结构的研究，提出了马“tarpan”类群的历史和进化认识。运用数学方法加强分析。对来自乌克兰更新世地区的马(tarpan)、E. latipes和E. hydruntinus，乌克兰切尔诺贝利禁区的E. przewalskii和来自波兰Roztocze国家公园的E. caballus形成sylvaticus(波兰konik)的牙釉质进行了扫描显微镜检查。对釉质结构进行了测量，包括棱柱(PE)和柱间基质(IPM)，以k指数作为它们的比率，根据釉质类型(I, II, III)进行了分类。研究结果证实，这些类群的釉质晶体结构根据属进化，饮食和环境条件而变化，形成了釉质的形态特征。通过分析，确定了集群，从而可以重建研究小组之间的关系。结果揭示了物种之间的明显差异，使它们能够在一个既定的物候图中分类。出现了两个主要集群:一个由来自不同地区的灭绝小马组成，另一个由现代马组成。值得注意的是，晚更新世欧洲种E. latipes与后一类群表现出密切的亲缘关系。
{"title":"Teeth Enamel Ultrastructural Analysis of Selected Equidae Taxa","authors":"Vitalii Demeshkant, Michał Biegalski, Leonid Rekovets","doi":"10.3390/d15111141","DOIUrl":"https://doi.org/10.3390/d15111141","url":null,"abstract":"This paper presents historical and evolutionary insights into the “tarpan” group of small horses by examining molar tooth enamel ultrastructure. Mathematical methodologies were applied to enhance the analysis. Tooth enamel from species such as Equus gmelini (tarpan), E. latipes, and E. hydruntinus from Pleistocene Ukrainian localities, E. przewalskii from the Chornobyl Exclusion Zone in Ukraine, and E. caballus form sylvaticus (Polish konik) from Roztocze National Park, Poland, underwent scanning microscope examination. Measurements of enamel structures, including prisms (PE) and interprismatic matrix (IPM), were conducted, with the K-index used as their ratio, categorized by enamel type (I, II, III). The findings confirmed that the crystal structures of enamel in these horse groups vary based on genus evolution, diet, and environmental conditions, shaping the enamel’s morphological features. Through analysis, clusters were identified, allowing for potential reconstructions of relationships among study groups. The results revealed distinct differences between species, enabling their classification within an established phenogram. Two primary clusters emerged: one consisting of extinct small horse forms from diverse localities and another grouping modern forms. Notably, the Late Pleistocene European species E. latipes showed close affinities to the latter cluster.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134900949","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Birds are important features of the urban landscape, offering valuable ecosystem services, such as physiological and psychological stress reduction, aesthetic pleasure, and education. Knowing the populations of bird species in cities is important for their successful conservation. The normalized difference vegetation index (NDVI) is a remotely sensed metric used as a green cover proxy. We estimated the abundance of 15 bird species in the urban green spaces of Kavala, Greece, and calculated the NDVI at 19 survey stations with three different spatial scales: 50 m, 200 m, and 500 m circular buffers. NDVI was shown to significantly affect the abundance of 13 species. The 50 m buffer best predicted the abundance of 4 species, the 200 m buffer predicted 7 species, and the 500 m buffer predicted 4 species. Abundance decreased with NDVI for 9 species (urban dwellers) and increased for 6 species (urban utilizers). These findings suggest that NDVI is a reliable predictor of the abundance of bird species in urban areas. More importantly, bird abundance and NDVI associations can be better described if determined at various spatial scales. These findings could be used for the prediction and monitoring of urban bird species populations and incorporated into urban conservation management plans.
{"title":"Normalized Difference Vegetation Index as a Proxy of Urban Bird Species Presence and Distribution at Different Spatial Scales","authors":"Vasileios J. Kontsiotis, Stavros Chatzigiovanakis, Evangelos Valsamidis, Panteleimon Xofis, Vasilios Liordos","doi":"10.3390/d15111139","DOIUrl":"https://doi.org/10.3390/d15111139","url":null,"abstract":"Birds are important features of the urban landscape, offering valuable ecosystem services, such as physiological and psychological stress reduction, aesthetic pleasure, and education. Knowing the populations of bird species in cities is important for their successful conservation. The normalized difference vegetation index (NDVI) is a remotely sensed metric used as a green cover proxy. We estimated the abundance of 15 bird species in the urban green spaces of Kavala, Greece, and calculated the NDVI at 19 survey stations with three different spatial scales: 50 m, 200 m, and 500 m circular buffers. NDVI was shown to significantly affect the abundance of 13 species. The 50 m buffer best predicted the abundance of 4 species, the 200 m buffer predicted 7 species, and the 500 m buffer predicted 4 species. Abundance decreased with NDVI for 9 species (urban dwellers) and increased for 6 species (urban utilizers). These findings suggest that NDVI is a reliable predictor of the abundance of bird species in urban areas. More importantly, bird abundance and NDVI associations can be better described if determined at various spatial scales. These findings could be used for the prediction and monitoring of urban bird species populations and incorporated into urban conservation management plans.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135037071","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dung beetles feed on and bury animal droppings, and their role is crucial in reducing the accumulation of manure, which diminishes the useful surface area of pastures. The aim of this research was to characterize the seasonal organization of dung beetle communities (Coleoptera: Scarabaeoidea) in the Middle Atlas region of Morocco in terms of core and satellite species. The beetles were collected using standard dung-baited traps. Four sites along a gradient of elevation were surveyed for one year every 7 to 10 days, depending on the season and local weather conditions. A total of 24,397 beetles were collected, belonging to 51 species. In most dung beetle communities, two to three species were found to be predominant, representing between 70 and 95% of all the individuals active at the same time but constituting only 10 to 30% of species diversity. The rapid succession of species at the same site limits the competition between species, allowing for the efficient use of available trophic resources.
{"title":"Seasonal Variation in the Organization of Dung Beetle Communities in the Moroccan Middle Atlas (Coleoptera: Scarabaeoidea)","authors":"Hasnae Hajji, Abdellatif Janati-Idrissi, Abdelkhaleq Fouzi Taybi, Valérie Caron, Jean-Pierre Lumaret, Youness Mabrouki","doi":"10.3390/d15111138","DOIUrl":"https://doi.org/10.3390/d15111138","url":null,"abstract":"Dung beetles feed on and bury animal droppings, and their role is crucial in reducing the accumulation of manure, which diminishes the useful surface area of pastures. The aim of this research was to characterize the seasonal organization of dung beetle communities (Coleoptera: Scarabaeoidea) in the Middle Atlas region of Morocco in terms of core and satellite species. The beetles were collected using standard dung-baited traps. Four sites along a gradient of elevation were surveyed for one year every 7 to 10 days, depending on the season and local weather conditions. A total of 24,397 beetles were collected, belonging to 51 species. In most dung beetle communities, two to three species were found to be predominant, representing between 70 and 95% of all the individuals active at the same time but constituting only 10 to 30% of species diversity. The rapid succession of species at the same site limits the competition between species, allowing for the efficient use of available trophic resources.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135086489","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kui Tang, Danqu Lamu, Tao Qin, Zhe Liao, Mingzhu Zhang, Zhipeng Wu, Shuangsheng Deng, Jianping Tao, Junjie Hu
Sarcocystis cruzi in cattle (Bos taurus) and Sarcocystis poephagicanis in yaks (Bos grunniens) are morphologically indistinguishable. However, the relationship between the two parasites is still unclear. Here, muscular tissues of the two species of domestic animal collected from abattoirs in China were examined for sarcocysts of S. cruzi and S. poephagicanis. The sarcocysts isolated from the samples were analyzed using light microscopy (LM), transmission electron microscopy (TEM), and DNA analysis. Sarcocysts of S. cruzi and S. poephagicanis were found in 405 of 950 (42.6%) cattle and 304 of 320 (95.0%) yaks. LM and TEM showed that the sarcocysts of the two parasites had similar morphological characteristics. The thin-walled sarcocysts had hair-like protrusions on the surface. The ultrastructures were demonstrated to include a primary cyst wall containing irregularly folded, hirsute, or bone-like protrusions. Four genetic markers of the two parasites were sequenced and analyzed, namely, 18S rDNA, 28S rDNA, mitochondrial cox1, and apicoplast rpl6. The sequences of the four loci had an interspecific similarity of 97.9–98.6%, 97.2–98.1%, 89.5–90.4%, and 96.9–97.2% identity, respectively. Phylogenetic analysis using 28S rDNA and cox1 sequences indicated that both S. cruzi and S. poephagicanis were placed into a group encompassing Sarcocystis spp. in ruminants with canid as known or putative definitive hosts. Sarcocystis cruzi and S. poephagicanis represent separate species, and cox1 and rpl6 were suitable for distinguishing between them.
{"title":"Prevalence and Genetic Characterization of Morphologically Indistinguishable Sarcocysts of Sarcocystis cruzi in Cattle and Sarcocystis poephagicanis in Yaks","authors":"Kui Tang, Danqu Lamu, Tao Qin, Zhe Liao, Mingzhu Zhang, Zhipeng Wu, Shuangsheng Deng, Jianping Tao, Junjie Hu","doi":"10.3390/d15111136","DOIUrl":"https://doi.org/10.3390/d15111136","url":null,"abstract":"Sarcocystis cruzi in cattle (Bos taurus) and Sarcocystis poephagicanis in yaks (Bos grunniens) are morphologically indistinguishable. However, the relationship between the two parasites is still unclear. Here, muscular tissues of the two species of domestic animal collected from abattoirs in China were examined for sarcocysts of S. cruzi and S. poephagicanis. The sarcocysts isolated from the samples were analyzed using light microscopy (LM), transmission electron microscopy (TEM), and DNA analysis. Sarcocysts of S. cruzi and S. poephagicanis were found in 405 of 950 (42.6%) cattle and 304 of 320 (95.0%) yaks. LM and TEM showed that the sarcocysts of the two parasites had similar morphological characteristics. The thin-walled sarcocysts had hair-like protrusions on the surface. The ultrastructures were demonstrated to include a primary cyst wall containing irregularly folded, hirsute, or bone-like protrusions. Four genetic markers of the two parasites were sequenced and analyzed, namely, 18S rDNA, 28S rDNA, mitochondrial cox1, and apicoplast rpl6. The sequences of the four loci had an interspecific similarity of 97.9–98.6%, 97.2–98.1%, 89.5–90.4%, and 96.9–97.2% identity, respectively. Phylogenetic analysis using 28S rDNA and cox1 sequences indicated that both S. cruzi and S. poephagicanis were placed into a group encompassing Sarcocystis spp. in ruminants with canid as known or putative definitive hosts. Sarcocystis cruzi and S. poephagicanis represent separate species, and cox1 and rpl6 were suitable for distinguishing between them.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135243093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The Midlands region of KwaZulu-Natal (KZN) Province in South Africa was hitherto a putative centre of floristic endemism (CFE) based on conjecture. The aim of this study was to empirically explore this concept by delineating unambiguous boundaries for this CFE and documenting the endemic spermatophytes within a conservation framework. The Greater Midlands Centre of Floristic Endemism (GMCFE), a more expanded study area than the parochial Midlands region of KZN, is formally described as southern Africa’s 20th CFE. It is a mid-elevation region occupying the greater Midlands of KZN, with extensions of contiguous grasslands extending northwards into southern Mpumalanga and southwards into north-eastern Eastern Cape. This “foothills” CFE covers ca. 77,000 km2 of predominantly mesic C4 grassland, ranging in elevation from ca. 700–2200 m a.s.l. It is congruent with the “sub-escarpment ecoregion,” essentially a composite of the Sub-escarpment Grassland and Savanna Bioregions and the sub-escarpment grasslands of southern Mpumalanga and northern KZN. The GMCFE hosts at least 220 endemic spermatophytes, of which almost a fifth belong to the family Apocynaceae. Families Asteraceae, Asphodelaceae, Fabaceae, and Iridaceae also contribute significantly. Genera Ceropegia, Aloe, Dierama, Kniphofia, Helichrysum, and Streptocarpus contribute the most endemics. More than half are forbs, and almost three-quarters are confined to the Grassland Biome. Endemic radiations are attributed to geodiversity and geological complexity (especially the strong lithological influence of dolerite); physiographic heterogeneity (particularly elevation gradients and variable terrain units); strategic proximity to hyper-diverse temperate and subtropical “border floras”; and localized pollinator-driven adaptive radiations. Of alarming concern is the high number of threatened plant taxa, with ca. 60% of the endemic flora Red Listed in threat categories (CE, E, and VU) or considered “rare”. Extremely low levels of formal protection and poor ecological connectivity, coupled with high levels of land transformation and intensive utilization, render the GMCFE one of the most imperilled CFE in South Africa. Urgent conservation action is required to safeguard this unique and highly threatened “rangeland flora” and stem the biodiversity crisis gripping the region.
{"title":"The Greater Midlands—A Mid-Elevation Centre of Floristic Endemism in Summer-Rainfall Eastern South Africa","authors":"Clinton Carbutt","doi":"10.3390/d15111137","DOIUrl":"https://doi.org/10.3390/d15111137","url":null,"abstract":"The Midlands region of KwaZulu-Natal (KZN) Province in South Africa was hitherto a putative centre of floristic endemism (CFE) based on conjecture. The aim of this study was to empirically explore this concept by delineating unambiguous boundaries for this CFE and documenting the endemic spermatophytes within a conservation framework. The Greater Midlands Centre of Floristic Endemism (GMCFE), a more expanded study area than the parochial Midlands region of KZN, is formally described as southern Africa’s 20th CFE. It is a mid-elevation region occupying the greater Midlands of KZN, with extensions of contiguous grasslands extending northwards into southern Mpumalanga and southwards into north-eastern Eastern Cape. This “foothills” CFE covers ca. 77,000 km2 of predominantly mesic C4 grassland, ranging in elevation from ca. 700–2200 m a.s.l. It is congruent with the “sub-escarpment ecoregion,” essentially a composite of the Sub-escarpment Grassland and Savanna Bioregions and the sub-escarpment grasslands of southern Mpumalanga and northern KZN. The GMCFE hosts at least 220 endemic spermatophytes, of which almost a fifth belong to the family Apocynaceae. Families Asteraceae, Asphodelaceae, Fabaceae, and Iridaceae also contribute significantly. Genera Ceropegia, Aloe, Dierama, Kniphofia, Helichrysum, and Streptocarpus contribute the most endemics. More than half are forbs, and almost three-quarters are confined to the Grassland Biome. Endemic radiations are attributed to geodiversity and geological complexity (especially the strong lithological influence of dolerite); physiographic heterogeneity (particularly elevation gradients and variable terrain units); strategic proximity to hyper-diverse temperate and subtropical “border floras”; and localized pollinator-driven adaptive radiations. Of alarming concern is the high number of threatened plant taxa, with ca. 60% of the endemic flora Red Listed in threat categories (CE, E, and VU) or considered “rare”. Extremely low levels of formal protection and poor ecological connectivity, coupled with high levels of land transformation and intensive utilization, render the GMCFE one of the most imperilled CFE in South Africa. Urgent conservation action is required to safeguard this unique and highly threatened “rangeland flora” and stem the biodiversity crisis gripping the region.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135242321","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Wheat crops provide 20% of calories worldwide. Cell walls function in plant growth, are part of biotic and abiotic stress resistance, and provide plant mechanical strength and adaptability. These functions factor into the productivity of wheat. The genes that produce and maintain the plant cell wall are up to 10% of the genome in many varied families. Previously, curated cell wall gene families have been published for maize and rice, two other important crop grasses. Here, 81 cell wall-related wheat gene families curated via sequence similarity to maize and rice and unique family protein motif searches are presented. A total of 4086 wheat, 1118 maize, 1036 rice, and 955 Arabidopsis genes were aligned and placed into gene family trees to present homologs for all four species. Due to hexaploidy, many wheat cell wall gene families show expected triplication of genes per family over maize, rice, and Arabidopsis. However, several families contained more wheat genes than expected. The utility of this research is demonstrated with an example from a pre-harvest sprouting study to identify specific gene families rather than the less descriptive identification available with standard bioinformatic searches.
{"title":"The Cell Wall-Related Gene Families of Wheat (Triticum aestivum)","authors":"Bryan W. Penning","doi":"10.3390/d15111135","DOIUrl":"https://doi.org/10.3390/d15111135","url":null,"abstract":"Wheat crops provide 20% of calories worldwide. Cell walls function in plant growth, are part of biotic and abiotic stress resistance, and provide plant mechanical strength and adaptability. These functions factor into the productivity of wheat. The genes that produce and maintain the plant cell wall are up to 10% of the genome in many varied families. Previously, curated cell wall gene families have been published for maize and rice, two other important crop grasses. Here, 81 cell wall-related wheat gene families curated via sequence similarity to maize and rice and unique family protein motif searches are presented. A total of 4086 wheat, 1118 maize, 1036 rice, and 955 Arabidopsis genes were aligned and placed into gene family trees to present homologs for all four species. Due to hexaploidy, many wheat cell wall gene families show expected triplication of genes per family over maize, rice, and Arabidopsis. However, several families contained more wheat genes than expected. The utility of this research is demonstrated with an example from a pre-harvest sprouting study to identify specific gene families rather than the less descriptive identification available with standard bioinformatic searches.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135480622","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Melissa H. Pecundo, Tao Chen, Thomas Edison E. dela Cruz, M. Patrick Griffith, Zhangli Hu, Huirong Chen, Nan Li
Heterocyte-forming cyanobacteria form symbiotic relationships with several lineages of plants. Here, twenty (20) strains of endosymbiotic cyanobacteria (cyanobionts) with Nostoc-like morphologies were isolated from the highly specialized coralloid roots of five host species in Cycadales—Cycas debaoensis, C. fairylakea, C. elongata, Ceratozamia robusta, and Macrozamia moorei. Molecular phylogeny based on the 16S rRNA gene placed these strains into seven different taxa within the Nostocaceae, specifically under the genera Desmonostoc and Dendronalium. The percent dissimilarity and unique patterns in the secondary structures of the D1-D1′, Box-B, V2, and V3 helices, which were based on the 16S–23S rRNA internal transcribed spacer (ITS) regions, supported three distinct species in Desmonostoc. These three morphologically distinct novel species are described in this report: Desmonostoc debaoense sp. nov., Desmonostoc meilinense sp. nov., and Desmonostoc xianhuense sp. nov. Other investigated strains were phylogenetically identified as members of the recently discovered genus Dendronalium and represent the first report of association of that genus with cycads. Our findings suggest that the order Cycadales hosts diverse species of cyanobionts in their coralloid roots and that many potential unreported or novel taxa are present in cycads occurring in their natural habitat and await discovery.
{"title":"Discovery of Cyanobacteria Associated with Cycads and Description of Three Novel Species in Desmonostoc (Nostocaceae)","authors":"Melissa H. Pecundo, Tao Chen, Thomas Edison E. dela Cruz, M. Patrick Griffith, Zhangli Hu, Huirong Chen, Nan Li","doi":"10.3390/d15111132","DOIUrl":"https://doi.org/10.3390/d15111132","url":null,"abstract":"Heterocyte-forming cyanobacteria form symbiotic relationships with several lineages of plants. Here, twenty (20) strains of endosymbiotic cyanobacteria (cyanobionts) with Nostoc-like morphologies were isolated from the highly specialized coralloid roots of five host species in Cycadales—Cycas debaoensis, C. fairylakea, C. elongata, Ceratozamia robusta, and Macrozamia moorei. Molecular phylogeny based on the 16S rRNA gene placed these strains into seven different taxa within the Nostocaceae, specifically under the genera Desmonostoc and Dendronalium. The percent dissimilarity and unique patterns in the secondary structures of the D1-D1′, Box-B, V2, and V3 helices, which were based on the 16S–23S rRNA internal transcribed spacer (ITS) regions, supported three distinct species in Desmonostoc. These three morphologically distinct novel species are described in this report: Desmonostoc debaoense sp. nov., Desmonostoc meilinense sp. nov., and Desmonostoc xianhuense sp. nov. Other investigated strains were phylogenetically identified as members of the recently discovered genus Dendronalium and represent the first report of association of that genus with cycads. Our findings suggest that the order Cycadales hosts diverse species of cyanobionts in their coralloid roots and that many potential unreported or novel taxa are present in cycads occurring in their natural habitat and await discovery.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135635854","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Not only are the plants of the golden camellia group examples of high-quality camellia germplasm, but they are also a plant group with rich medicinal and nutritional value, and these plants are used as food, cosmetics and traditional medicine in China. There are approximately 50 species in this group around the world, and more than 30 species of golden camellia plants have been listed in China. The leaves and flowers of these species have similar shapes, and as such, they are often confused as the same species. Our study used simplified genome sequencing technology to construct a phylogenetic tree of plants in the Chinese golden camellia group, and we also described the evolutionary relationships. At the same time, the secondary metabolic indexes of the total phenols, total flavonoids, total anthocyanins and ellagic acid in the leaves were determined, and principal component clustering analysis was also performed. The results showed that the phylogenetic relationship and genetic distance among the plant species of Chinese golden camellia group plants were fully revealed. The cluster analysis of chemical secondary metabolism and genetic phylogenetic trees showed some of the same trends, thereby indicating that secondary metabolism golden camellia can be used as biomarkers for golden camellia. The research results provide phylogenetic information for the genotype and performance diversity of the golden camellia that is regionally distributed in China, as well as provide a theoretical basis for the research and development of potential bioactive substances.
{"title":"Genotypic and Phenotypic Diversity of Endemic Golden Camellias Collected from China","authors":"Jianmin Tang, Rong Zou, Yishan Yang, Yunsheng Jiang, Faming Wang, Shengfeng Chai, Xiao Wei","doi":"10.3390/d15111134","DOIUrl":"https://doi.org/10.3390/d15111134","url":null,"abstract":"Not only are the plants of the golden camellia group examples of high-quality camellia germplasm, but they are also a plant group with rich medicinal and nutritional value, and these plants are used as food, cosmetics and traditional medicine in China. There are approximately 50 species in this group around the world, and more than 30 species of golden camellia plants have been listed in China. The leaves and flowers of these species have similar shapes, and as such, they are often confused as the same species. Our study used simplified genome sequencing technology to construct a phylogenetic tree of plants in the Chinese golden camellia group, and we also described the evolutionary relationships. At the same time, the secondary metabolic indexes of the total phenols, total flavonoids, total anthocyanins and ellagic acid in the leaves were determined, and principal component clustering analysis was also performed. The results showed that the phylogenetic relationship and genetic distance among the plant species of Chinese golden camellia group plants were fully revealed. The cluster analysis of chemical secondary metabolism and genetic phylogenetic trees showed some of the same trends, thereby indicating that secondary metabolism golden camellia can be used as biomarkers for golden camellia. The research results provide phylogenetic information for the genotype and performance diversity of the golden camellia that is regionally distributed in China, as well as provide a theoretical basis for the research and development of potential bioactive substances.","PeriodicalId":56006,"journal":{"name":"Diversity-Basel","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135636830","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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