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Editorial for Special Issue on Artificial Intelligence in Tissue Engineering and Biology. 组织工程与生物学中的人工智能》特刊编辑。
IF 3.5 3区 医学 Q3 CELL & TISSUE ENGINEERING Pub Date : 2024-08-29 DOI: 10.1089/ten.TEA.2024.0240
Jason L Guo, Michael Januszyk, Michael T Longaker
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引用次数: 0
The role of matrix stiffness and viscosity on lipid phenotype and fat lineage potential. 基质硬度和粘度对脂质表型和脂肪血统潜能的作用
IF 3.5 3区 医学 Q3 CELL & TISSUE ENGINEERING Pub Date : 2024-08-21 DOI: 10.1089/ten.TEA.2024.0149
Chelsea Jane Stephens, Reina Kobayashi, Daniel C Berry, Jonathan T Butcher

Autologous fat transfer is a common procedure that patients undergo to rejuvenate large soft tissue defects. However, these surgeries are complicated by limited tissue sources, donor-site morbidity, and necrosis. While the biofabrication of fat tissue can serve as a clinical option for reconstructive surgery, the influence of matrix mechanics, specifically stiffness and viscosity, on adipogenesis requires further elucidation. Additionally, the effects of these mechanical parameters on metabolic and thermogenic fat potential have yet to be investigated. Gelatin methacryloyl (GelMA) polymers with varying degrees of methacrylation (DoM) were fabricated to create matrices with different stiffnesses and viscosities. Human adipose-derived mesenchymal stem cells were then encapsulated in mechanically tunable GelMA and underwent adipogenesis to investigate the effects of matrix mechanics on lipid phenotype and fat potential. Mechanical testing confirmed that GelMA stiffness was regulated by DoM and weight composition, while viscosity was determined by the latter. Further work revealed that while lipid phenotype became more enriched as matrix stiffness and viscosity declined, the potential towards metabolic and thermogenic fat appeared to be more viscous-dependent rather than stiffness-dependent. Additionally, FABP4 and UCP1 gene expression exhibited viscous-dependent behavior despite comparable levels of PPARg. However, despite the superior role of viscosity, lipid quantity and mitochondrial abundance demonstrated stiffness-dependent behavior. Overall, this work revealed that matrix viscosity played a more superior role than stiffness in driving adipogenesis and distinguishing between metabolic and thermogenic fat potential. Ultimately, this differentiation in fat production is important for engineering ideal adipose tissue for large soft tissue defects.

自体脂肪移植是患者为使大面积软组织缺损恢复年轻而进行的一种常见手术。然而,这些手术因组织来源有限、供体部位发病率和坏死而变得复杂。虽然脂肪组织的生物制造可以作为重建手术的临床选择,但基质力学,特别是硬度和粘度对脂肪生成的影响还需要进一步阐明。此外,这些机械参数对脂肪代谢和生热潜力的影响也有待研究。我们制造了具有不同甲基丙烯酸化程度(DoM)的明胶甲基丙烯酰(GelMA)聚合物,以创建具有不同硬度和粘度的基质。然后将人脂肪间充质干细胞包裹在机械可调的 GelMA 中,并进行脂肪生成,以研究基质力学对脂质表型和脂肪潜能的影响。机械测试证实,GelMA 的硬度受 DoM 和重量成分的调节,而粘度则由后者决定。进一步的研究表明,虽然脂质表型随着基质硬度和粘度的下降而变得更加丰富,但代谢和产热脂肪的潜力似乎更多地取决于粘度,而不是硬度。此外,尽管 PPARg 的水平相当,但 FABP4 和 UCP1 基因的表达表现出粘度依赖性。不过,尽管粘度的作用更强,但脂质数量和线粒体丰度也表现出与硬度相关的行为。总之,这项研究揭示了基质粘度比硬度在驱动脂肪生成和区分代谢性脂肪潜能和生热性脂肪潜能方面发挥着更重要的作用。归根结底,脂肪生成的这种分化对于为大面积软组织缺损设计理想的脂肪组织非常重要。
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引用次数: 0
Vascularization of Human Acellular Dermal Matrices: A Comparative Study in a Nonhuman Primate Model. 人类细胞真皮基质的血管化:非人灵长类动物模型比较研究
IF 3.5 3区 医学 Q3 CELL & TISSUE ENGINEERING Pub Date : 2024-08-19 DOI: 10.1089/ten.TEA.2024.0059
Victoria Stefanelli, Jared Lombardi, Joselito Ferrer, Maryellen Gardocki-Sandor

Four human acellular dermal matrices (hADMs) were characterized in a nonhuman primate abdominal wall repair model by evaluating host immune response, vascularization, and incorporation into host tissues. AlloDerm™ (electron beam-sterilized hADM [e-hADM]), AlloMax™ (gamma beam-sterilized hADM, freeze-dried [g-hADM-FD]), DermaMatrix™ (hADM, freeze-dried [hADM-FD]), and FlexHD™ (ethanol-treated hADM [EtOH-hADM]) were each implanted in an abdominal wall-bridging defect in nonhuman primates (n = 3 animals/time point, n = 36 animals). Immunohistochemical and histological assessments were conducted on biopsies from each hADM at 1-, 3-, and 6-months postimplantation to assess vascularization (hematoxylin and eosin [H&E], CD31, alpha smooth muscle actin [αSMA], collagen IV), inflammatory/immune response (H&E, CD3, CD20, CD68), and collagen turnover (H&E, matrix metalloproteinase-9 [MMP-9]). MMP-9 immunolabeling was similar among different hADMs at 1 month; however, hADM-FD and EtOH-hADM showed higher total mean MMP-9-immunopositive areas at approximately 16% compared with <1% for e-hADM and g-hADM at 6 months postimplantation. Cells that stained positively for CD68, CD3, and CD20 were generally higher for hADM-FD and EtOH-hADM compared with other hADMs. The mean CD31-immunopositive area, CD31 vessel density, CD31 vessel diameter, and collagen IV-immunopositive area increased over time. Among all the hADM types, e-hADM had the highest mean (±standard deviation [SD]) CD31-immunopositive area at 1.54% ± 1.01%, vessel density at 7.86 × 10-5 ± 3.96 × 10-5 vessels/µm2, and collagen IV-immunopositive area at 2.55% ± 0.73% 1-month postimplantation. The pattern of αSMA immunolabeling varied among the hADMs. Histology showed that overall inflammation was mild at 1 month. Overall fibroblast repopulation and collagen remodeling increased over time from 1 to 6 months postimplantation. Fibroblast infiltration was minimal to mild at 1 month, with e-hADM showing the highest mean (±SD) score at 2.00 ± 0.00 compared with other hADMs. Only hADM-FD was not completely replaced by neotissue formation at 6 months postimplantation. All hADMs promoted vascularization, cell infiltration, and incorporation into host tissue, which were associated with acute inflammation and immune responses, within a 6-month period. A trend toward relatively enhanced early vascularization in e-hADM compared with other hADMs was observed. Immunogenic responses among the hADMs in the present study showed a slight distinction toward more quiescent terminally sterilized hADMs (e-hADM, g-hADM-FD) versus aseptically processed hADMs (EtOH-hADM, hADM-FD).

在非人灵长类动物腹壁修复模型中,通过评估宿主免疫反应、血管生成和与宿主组织的结合情况,对四种人类无细胞真皮基质(hADM)进行了鉴定。和 FlexHD™(乙醇处理过的 hADM [EtOH-hADM])分别植入非人灵长类动物的腹壁桥接缺损处(n=3 只动物/时间点,N=36 只动物)。在植入后 1、3 和 6 个月时,对每个 hADM 的活检组织进行免疫组织化学和组织学评估,以评估血管形成(苏木精和伊红 [H&E]、CD31、α 平滑肌肌动蛋白 [αSMA]、胶原蛋白 IV)、炎症/免疫反应(H&E、CD3、CD20、CD68)和胶原周转(H&E、基质金属蛋白酶-9 [MMP-9])。不同的 hADM 在 1 个月时的 MMP-9 免疫标记相似;但是,hADM-FD 和 EtOH-hADM 的 MMP-9 免疫阳性总平均面积约为 16%,比 hADM-FD 和 EtOH-hADM 高。
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引用次数: 0
Mapping Biomaterial Complexity by Machine Learning. 通过机器学习绘制生物材料的复杂性。
IF 3.5 3区 医学 Q3 CELL & TISSUE ENGINEERING Pub Date : 2024-08-12 DOI: 10.1089/ten.TEA.2024.0067
Eman Ahmed, Prajakatta Mulay, Cesar Ramirez, Gabriela Tirado-Mansilla, Eugene Cheong, Adam Gormley

Biomaterials often have subtle properties that ultimately drive their bespoke performance. Given this nuanced structure-function behavior, the standard scientific approach of one experiment at a time or design of experiment (DOE) methods is largely inefficient for the discovery of complex biomaterials. More recently, high-throughput experimentation coupled with machine learning methods have matured beyond expert users allowing scientists and engineers from diverse backgrounds to access these powerful data science tools. As a result, we now have the opportunity to strategically utilize all available data from high- throughput experiments to train efficacious models and map the structure-function behavior of biomaterials for their discovery. Herein, we discuss this necessary shift to data-driven determination of structure-function properties of biomaterials as we highlight how machine learning is leveraged in identifying physicochemical cues for biomaterials in tissue engineering, gene delivery, drug delivery, protein stabilization, and antifouling materials. We also discuss data-mining approaches that are coupled with machine learning to map biomaterial functions that reduce the load on experimental approaches for faster biomaterial discovery. Ultimately, harnessing the prowess of machine learning will lead to accelerated discovery and development of optimal biomaterial designs.

生物材料通常具有微妙的特性,这些特性最终会影响其定制性能。鉴于这种细微的结构-功能行为,一次一个实验或实验设计(DOE)方法的标准科学方法在发现复杂生物材料方面效率很低。最近,高通量实验与机器学习方法已经成熟,超出了专家用户的范围,让不同背景的科学家和工程师都能使用这些强大的数据科学工具。因此,我们现在有机会战略性地利用来自高通量实验的所有可用数据来训练有效的模型,并绘制生物材料的结构-功能行为图,从而发现生物材料。在本文中,我们将讨论这一必要的转变,即以数据为驱动确定生物材料的结构-功能特性,并重点介绍如何利用机器学习识别组织工程、基因递送、药物递送、蛋白质稳定和防污材料中生物材料的物理化学线索。我们还讨论了与机器学习相结合的数据挖掘方法,以绘制生物材料功能图,从而减轻实验方法的负担,加快生物材料的发现。最终,利用机器学习的优势将加速最佳生物材料设计的发现和开发。
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引用次数: 0
Enhancing Bone Healing Through Localized Cold Therapy in a Murine Femoral Fracture Model. 在小鼠股骨骨折模型中通过局部冷疗法促进骨愈合
IF 3.5 3区 医学 Q3 CELL & TISSUE ENGINEERING Pub Date : 2024-08-07 DOI: 10.1089/ten.TEA.2024.0069
Matthew Zakaria, Jerome Allard, Jose Garcia, Justin Matta, Yazan Honjol, Drew Schupbach, Michael Grant, Fackson Mwale, Edward Harvey, Geraldine Merle

Fracture healing, a critical and complex biological process, often presents challenges in clinical practice with the current standards failing to fully address the medical needs for rapid and effective recovery. In this work, a localized cold therapy is investigated as an alternative approach to expedite bone healing. We hypothesized that optimized cold application can enhance bone healing within a fracture model by inducing hypoxia, leading to accelerated angiogenesis along with improved osteogenesis. A short, localized cold exposure is directly applied to the fracture site over a 4-week period in a mouse fracture model, aiming to assess its impact on bone formation through mechanisms of angiogenesis and osteogenesis. Our results revealed a significantly greater volume of new bone tissue and enhanced vascularity at the fracture site in the cold-treated group compared with controls. Calcified tissue histology analysis showed that the accelerated callus maturation and development of the vascular network following cold exposure were associated with an activity increase of alkaline phosphatase and transient receptor potential vanilloid 1. These biological changes were accompanied by a hypoxic environment induced during cold therapy. The study provides compelling evidence supporting the efficacy of intermittent cold therapy in accelerating fracture healing. These promising results highlight the need for further research in larger-scale studies and diverse fracture models, underlining the potential of cold therapy as a novel, noninvasive treatment strategy in orthopedic care.

骨折愈合是一个关键而复杂的生物过程,在临床实践中常常面临挑战,现行标准无法完全满足快速有效恢复的医疗需求。在这项工作中,我们研究了一种局部冷疗法,作为加速骨愈合的替代方法。我们假设,优化的冷敷可通过诱导缺氧来促进骨折模型中的骨愈合,从而加速血管生成并改善骨生成。在为期四周的小鼠骨折模型中,在骨折部位直接进行短时间的局部冷暴露,旨在评估冷暴露通过血管生成和骨生成机制对骨形成的影响。我们的研究结果表明,与对照组相比,冷处理组骨折部位的新骨组织体积明显增大,血管生成能力增强。钙化组织的组织学分析表明,冷暴露后胼胝体的加速成熟和血管网络的发展与碱性磷酸酶(ALP)和瞬时受体电位类香草素 1(TRPV1)的活性增加有关。这些生物变化与冷疗期间诱发的缺氧环境有关。该研究提供了令人信服的证据,支持间歇性冷疗法在加速骨折愈合方面的功效。这些令人鼓舞的结果强调了在更大规模的研究和各种骨折模型中开展进一步研究的必要性,同时也凸显了冷疗法作为一种新型、非侵入性治疗策略在骨科治疗中的潜力。
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引用次数: 0
Endothelial cells increase mesenchymal stem cell differentiation in scaffold-free 3D vascular tissue. 内皮细胞可促进无支架三维血管组织中间充质干细胞的分化。
IF 3.5 3区 医学 Q3 CELL & TISSUE ENGINEERING Pub Date : 2024-08-07 DOI: 10.1089/ten.TEA.2024.0122
William Gabriel DeMaria, Andre Figueroa-Milla, Abigail Kaija, Anne E Harrington, Benjamin Tero, Larisa Ryzhova, Lucy Liaw, Marsha W Rolle

In this study, we present a versatile, scaffold-free approach to create ring-shaped engineered vascular tissue segments using human mesenchymal stem cell-derived smooth muscle cells (hMSC-SMCs) and endothelial cells (ECs). We hypothesized that incorporation of ECs would increase hMSC-SMC differentiation without compromising tissue ring strength or fusion to form tissue tubes. Undifferentiated hMSCs and ECs were co-seeded into custom ring-shaped agarose wells using four different concentrations of ECs: 0, 10, 20, and 30%. Co-seeded EC and hMSC rings were cultured in SMC differentiation medium for a total of 22 days. Tissue rings were then harvested for histology, western blotting, wire myography, and uniaxial tensile testing to examine their structural and functional properties. Differentiated hMSC tissue rings comprised of 20 and 30% ECs exhibited significantly greater SMC contractile protein expression, endothelin-1 (ET-1)-meditated contraction, and force at failure compared to the 0% EC rings. On average, the 0, 10, 20, and 30% EC rings exhibited a contractile force of 0.745 ± 0.117, 0.830 ± 0.358, 1.31 ± 0.353, and 1.67 ± 0.351 mN (mean ± SD) in response to ET-1, respectively. Additionally, the mean maximum force at failure for the 0, 10, 20, and 30% EC rings was 88.5 ± 36.2, 121 ± 59.1, 147 ± 43.1, and 206 ± 20.8 mN (mean ± SD), respectively. Based on these results, 30% EC rings were fused together to form tissue engineered blood vessels (TEBVs) and compared to 0% EC TEBV controls. The addition of 30% ECs in TEBVs did not affect ring fusion but did result in significantly greater SMC protein expression (calponin and smoothelin). In summary, co-seeding hMSCs with ECs to form tissue rings resulted in greater contraction, strength, and hMSC-SMC differentiation compared to hMSCs alone and indicates a method to create functional 3D human vascular cell co-culture model.

在这项研究中,我们提出了一种多功能、无支架的方法,利用人间充质干细胞衍生的平滑肌细胞(hMSC-SMC)和内皮细胞(EC)创建环形工程血管组织片段。我们假设,EC的加入将增加hMSC-SMC的分化,而不会影响组织环的强度或融合形成组织管。将未分化的 hMSCs 和 ECs 共同播种到定制的环形琼脂糖孔中,使用四种不同浓度的 ECs:0、10、20 和 30%。共种的 EC 和 hMSC 环在 SMC 分化培养基中总共培养了 22 天。然后取组织环进行组织学、Western 印迹、金属丝肌电图和单轴拉伸测试,以检查其结构和功能特性。与含 20% 和 30% EC 的组织环相比,含 20% 和 30% EC 的分化 hMSC 组织环在 SMC 收缩蛋白表达、内皮素-1(ET-1)诱导的收缩和失效时的力量方面均明显高于含 0% EC 的组织环。平均而言,0、10、20 和 30% EC 环对 ET-1 的反应收缩力分别为 0.745 ± 0.117、0.830 ± 0.358、1.31 ± 0.353 和 1.67 ± 0.351 mN(平均值 ± SD)。此外,0、10、20 和 30% EC 环的平均最大破坏力分别为 88.5 ± 36.2、121 ± 59.1、147 ± 43.1 和 206 ± 20.8 mN(平均值 ± SD)。基于这些结果,30% EC 环被融合在一起形成组织工程血管(TEBV),并与 0% EC TEBV 对照组进行比较。在 TEBV 中添加 30% 的 EC 不会影响环的融合,但会导致 SMC 蛋白表达(钙蛋白和平滑肌蛋白)显著增加。总之,与单独使用 hMSCs 相比,将 hMSCs 与 ECs 共同接种形成组织环会产生更大的收缩力、强度和 hMSC-SMC 分化,这表明有一种方法可以创建功能性三维人类血管细胞共培养模型。
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引用次数: 0
Bi-layered Adipose Mesenchymal Cell Sheets Improve Bladder Compliance in Spinal Cord-Injured Rats. 双层脂肪间充质细胞片改善脊髓损伤大鼠的膀胱顺应性
IF 3.5 3区 医学 Q3 CELL & TISSUE ENGINEERING Pub Date : 2024-08-07 DOI: 10.1089/ten.TEA.2024.0115
Yuki Matsumoto, Tetsuya Imamura, Ryo Kitahara, Yoshihiro Inoue, Tetsuichi Saito, Manabu Ueno, Tomonori Minagawa, Teruyuki Ogawa, Osamu Ishizuka

To improve bladder compliance in patients with low-compliance bladders, augmentation cystoplasty with the intestinal tract is performed. However, the use of the intestinal tract often leads to serious surgical complications. Tissue engineering technologies have the potential to improve bladder compliance without using the intestinal tract. In this study, we fabricated bi-layered adipose-derived mesenchymal cell (AMC) sheets and then determined whether the bi-layered AMC sheets could improve bladder compliance in rats with spinal cord injury (SCI). The abdominal adipose tissues of green fluorescence protein (GFP)-transfected Sprague-Dawley (SD) rats were harvested, and the attached and proliferating cells on type I collagen were used as AMCs. The AMCs were then cultured on temperature-responsive culture dishes. After reaching over-confluence, the AMCs that maintained cell-cell contacts were detached from the dishes and applied to a gelatin hydrogel sheet. Then, another detached AMC monolayer was accumulated on the AMC monolayer-applied gelatin. Prior to 4 weeks of transplantation, the levels of T8-9 in the spinal cords of recipient SD rats were partially transected. After producing the bi-layered AMC sheets and the rats with SCI, the detrusor muscles of the anterior bladder walls of the rats with SCI were incised, and the bi-layered AMC sheet was patch-transplanted onto the exposed bladder epithelium (n = 8). As a control, the sham operation was performed (n = 7). Four weeks after the transplantation, bladder capacity and bladder compliance in AMC sheet-transplanted SCI rats were significantly higher than those in sham-operated control SCI rats. The smooth muscle layers in AMC sheet-transplanted bladders were significantly larger than those in control bladders. In addition, the collagen fibers in the AMC sheet-transplanted bladders were significantly smaller than those in the control bladders. Some GFP-positive transplanted AMCs differentiated into smooth muscle actin- or desmin-positive cells. Furthermore, GFP-positive cells secreted transforming growth factor-β1 or vascular endothelial growth factor. Therefore, this study showed that bi-layered AMC sheets could improve bladder compliance and bladder tissues in SCI rats.

为改善膀胱顺应性差的患者的膀胱顺应性,可采用肠道膀胱成形术。然而,使用肠道往往会导致严重的手术并发症。组织工程技术有可能在不使用肠道的情况下改善膀胱顺应性。在这项研究中,我们制作了双层脂肪间充质细胞(AMC)片,然后测定了双层AMC片是否能改善脊髓损伤(SCI)大鼠的膀胱顺应性。采集经绿色荧光蛋白(GFP)转染的Sprague-Dawley(SD)大鼠的腹部脂肪组织,将附着在Ⅰ型胶原上并不断增殖的细胞作为AMC。然后在温度反应培养皿中培养 AMC。达到过度融合后,从培养皿中分离出保持细胞间接触的 AMC,并将其涂在明胶水凝胶片上。然后,在涂有明胶的AMC单层上堆积另一个分离的AMC单层。移植 4 周前,部分切断受体 SD 大鼠脊髓中 T8-9 的水平。在制作双层 AMC 片和 SCI 大鼠后,切开 SCI 大鼠膀胱前壁的逼尿肌,将双层 AMC 片补片移植到暴露的膀胱上皮(n = 8)上。作为对照,进行假手术(7 只)。移植四周后,移植 AMC 片的 SCI 大鼠的膀胱容量和膀胱顺应性明显高于假手术对照组 SCI 大鼠。AMC片移植膀胱的平滑肌层明显大于对照组膀胱的平滑肌层。此外,AMC片移植膀胱中的胶原纤维明显小于对照组膀胱中的胶原纤维。一些GFP阳性的移植AMC分化为SMA或desmin阳性细胞。此外,GFP 阳性细胞分泌转化生长因子-β1 或血管内皮生长因子。因此,本研究表明,双层 AMC 片可改善 SCI 大鼠的膀胱顺应性和膀胱组织。
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引用次数: 0
Artificial Intelligence Applications in Oral Cancer and Oral Dysplasia. 人工智能在口腔癌和口腔发育不良中的应用。
IF 3.5 3区 医学 Q3 CELL & TISSUE ENGINEERING Pub Date : 2024-08-07 DOI: 10.1089/ten.TEA.2024.0096
Chi T Viet, Michael Zhang, Neeraja Dharmaraj, Grace Y Li, Alexander T Pearson, Victoria A Manon, Anupama Grandhi, Ke Xu, Bradley E Aouizerat, Simon Young

Oral squamous cell carcinoma (OSCC) is a highly unpredictable disease with devastating mortality rates that have not changed over the past decades, in the face of advancements in treatments and biomarkers, which have improved survival for other cancers. Delays in diagnosis are frequent, leading to more disfiguring treatments and poor outcomes for patients. The clinical challenge lies in identifying those patients at the highest risk of developing OSCC. Oral epithelial dysplasia (OED) is a precursor of OSCC with highly variable behavior across patients. There is no reliable clinical, pathological, histological, or molecular biomarker to determine individual risk in OED patients. Similarly, there are no robust biomarkers to predict treatment outcomes or mortality in OSCC patients. This review aims to highlight advancements in artificial intelligence (AI)-based methods to develop predictive biomarkers of OED transformation to OSCC or predictive biomarkers of OSCC mortality and treatment response. Biomarkers such as S100A7 demonstrate promising appraisal for the risk of malignant transformation of OED. Machine learning-enhanced multiplex immunohistochemistry workflows examine immune cell patterns and organization within the tumor immune microenvironment to generate outcome predictions in immunotherapy. Deep learning (DL) is an AI-based method using an extended neural network or related architecture with multiple "hidden" layers of simulated neurons to combine simple visual features into complex patterns. DL-based digital pathology is currently being developed to assess OED and OSCC outcomes. The integration of machine learning in epigenomics aims to examine the epigenetic modification of diseases and improve our ability to detect, classify, and predict outcomes associated with epigenetic marks. Collectively, these tools showcase promising advancements in discovery and technology, which may provide a potential solution to addressing the current limitations in predicting OED transformation and OSCC behavior, both of which are clinical challenges that must be addressed in order to improve OSCC survival.

口腔鳞状细胞癌(OSCC)是一种非常难以预测的疾病,死亡率极高,过去几十年来,尽管治疗方法和生物标志物取得了进步,提高了其他癌症的存活率,但死亡率却一直没有改变。延误诊断的情况时有发生,导致更多的毁容性治疗和患者的不良预后。临床面临的挑战在于如何识别那些罹患 OSCC 风险最高的患者。口腔上皮发育不良(OED)是 OSCC 的前兆,不同患者的表现差异很大。目前还没有可靠的临床、病理、组织学或分子生物标志物来确定 OED 患者的个体风险。同样,也没有可靠的生物标志物来预测 OSCC 患者的治疗效果或死亡率。本综述旨在重点介绍基于人工智能(AI)的方法在开发OED转化为OSCC的预测性生物标志物或OSCC死亡率和治疗反应的预测性生物标志物方面取得的进展。基于机器学习的生物标志物(如S100A7)在评估OED恶性转化风险方面显示出良好的前景。机器学习增强型多重免疫组化(mIHC)工作流程可检查肿瘤免疫微环境中的免疫细胞模式和组织,从而生成免疫疗法的结果预测。深度学习(DL)是一种基于人工智能的方法,它使用扩展神经网络或具有多层 "隐藏 "模拟神经元的相关架构,将简单的视觉特征组合成复杂的模式。目前正在开发基于 DL 的数字病理学,以评估 OED 和 OSCC 的结果。机器学习与表观基因组学的整合旨在研究疾病的表观遗传修饰,提高我们检测、分类和预测与表观遗传标记相关的结果的能力。总之,这些工具展示了发现和技术方面令人鼓舞的进步,它们可能为解决目前在预测OED转化和OSCC行为方面存在的局限性提供了潜在的解决方案,而这两者都是改善OSCC存活率所必须应对的临床挑战。
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引用次数: 0
Tuning the Response of Synthetic Mechanogenetic Gene Circuits Using Mutations in TRPV4. 利用 TRPV4 的突变调节合成机制基因回路的反应
IF 3.5 3区 医学 Q3 CELL & TISSUE ENGINEERING Pub Date : 2024-08-02 DOI: 10.1089/ten.TEA.2024.0163
Yu Seon Kim, Nancy Steward, Autumn Kim, Isabella Fehle, Farshid Guilak

Conventional gene therapy approaches for drug delivery generally rely on constitutive expression of the transgene and thus lack precise control over the timing and magnitude of delivery. Synthetic gene circuits with promoters that are responsive to user-defined stimuli can provide a molecular switch that can be utilized by cells to control drug production. Our laboratory has previously developed a mechanogenetic gene circuit that can deliver biological drugs, such as interleukin-1 receptor antagonist (IL-1Ra), on-demand through the activation of Transient receptor potential family, vanilloid 4 (TRPV4), a mechanosensory ion channel that has been shown to be activated transiently in response to physical stimuli such as physiological mechanical loading or hypo-osmotic stimuli. The goal of this study was to use mutations in TRPV4 to further tune the response of this mechanogenetic gene circuit. Human iPSC-derived chondrocytes harboring targeted gain-of-function mutations of TRPV4 were chondrogenically differentiated. Both mutants-V620I and T89I-showed greater total IL-1Ra production compared with wild type following TRPV4 agonist treatment, as well as mechanical or osmotic loading, but with altered temporal dynamics. Gene circuit output was dependent on the degree of TRPV4 activation secondary to GSK101 concentration or strain magnitude during loading. V620I constructs secreted more IL-1Ra compared with T89I across all experimental conditions, indicating that two mutations that cause similar functional changes to TRPV4 can result in distinct circuit activation profiles that differ from wild-type cells. In summary, we successfully demonstrate proof-of-concept that point mutations in TRPV4 that alter channel function can be used to tune the therapeutic output of mechanogenetic gene circuits.

传统的基因治疗给药方法通常依赖于转基因的组成型表达,因此缺乏对给药时间和剂量的精确控制。合成基因回路的启动子能对用户定义的刺激做出反应,可提供一种分子开关,细胞可利用这种开关控制药物的生产。TRPV4 是一种机械感觉离子通道,已被证明可在生理机械负荷或低渗刺激等物理刺激下瞬时激活。本研究的目的是利用 TRPV4 的突变进一步调整这一机械基因回路的反应。对携带 TRPV4 目标功能增益突变的人类 iPSC 衍生软骨细胞进行了软骨分化。与野生型相比,两种突变体--V620I和T89I--在TRPV4激动剂处理以及机械或渗透负载后都显示出更高的IL-1Ra总产量,但时间动态有所改变。基因回路输出取决于加载过程中 GSK101 浓度或应变大小继发的 TRPV4 激活程度。与 T89I 相比,V620I 构建体在所有实验条件下都分泌了更多的 IL-1Ra,这表明导致 TRPV4 发生类似功能变化的两种突变可导致不同于野生型细胞的不同电路激活特征。总之,我们成功证明了改变通道功能的 TRPV4 点突变可用于调整机械基因回路的治疗输出。
{"title":"Tuning the Response of Synthetic Mechanogenetic Gene Circuits Using Mutations in TRPV4.","authors":"Yu Seon Kim, Nancy Steward, Autumn Kim, Isabella Fehle, Farshid Guilak","doi":"10.1089/ten.TEA.2024.0163","DOIUrl":"10.1089/ten.TEA.2024.0163","url":null,"abstract":"<p><p>Conventional gene therapy approaches for drug delivery generally rely on constitutive expression of the transgene and thus lack precise control over the timing and magnitude of delivery. Synthetic gene circuits with promoters that are responsive to user-defined stimuli can provide a molecular switch that can be utilized by cells to control drug production. Our laboratory has previously developed a mechanogenetic gene circuit that can deliver biological drugs, such as interleukin-1 receptor antagonist (IL-1Ra), on-demand through the activation of Transient receptor potential family, vanilloid 4 (TRPV4), a mechanosensory ion channel that has been shown to be activated transiently in response to physical stimuli such as physiological mechanical loading or hypo-osmotic stimuli. The goal of this study was to use mutations in TRPV4 to further tune the response of this mechanogenetic gene circuit. Human iPSC-derived chondrocytes harboring targeted gain-of-function mutations of TRPV4 were chondrogenically differentiated. Both mutants-V620I and T89I-showed greater total IL-1Ra production compared with wild type following TRPV4 agonist treatment, as well as mechanical or osmotic loading, but with altered temporal dynamics. Gene circuit output was dependent on the degree of TRPV4 activation secondary to GSK101 concentration or strain magnitude during loading. V620I constructs secreted more IL-1Ra compared with T89I across all experimental conditions, indicating that two mutations that cause similar functional changes to TRPV4 can result in distinct circuit activation profiles that differ from wild-type cells. In summary, we successfully demonstrate proof-of-concept that point mutations in TRPV4 that alter channel function can be used to tune the therapeutic output of mechanogenetic gene circuits.</p>","PeriodicalId":56375,"journal":{"name":"Tissue Engineering Part A","volume":null,"pages":null},"PeriodicalIF":3.5,"publicationDate":"2024-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141617749","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptomics Demonstrates Significant Biological Effect of Growing Stem Cells on RGD-Cotton Scaffold. 转录组学证明干细胞在 RGD 棉花支架上生长具有显著的生物效应。
IF 3.5 3区 医学 Q3 CELL & TISSUE ENGINEERING Pub Date : 2024-08-01 Epub Date: 2024-05-06 DOI: 10.1089/ten.TEA.2023.0333
Sihem Aouabdi, Taoufik Nedjadi, Rawiah Alsiary, Fouzi Mouffouk, Hifzur Rahman Ansari

Stem cell therapy provides a viable alternative treatment for degenerated or damaged tissue. Stem cells have been used either alone or in conjunction with an artificial scaffold. The latter provides a structural advantage by enabling the cells to thrive in three-dimensional (3D) settings, closely resembling the natural in vivo environments. Previously, we disclosed the development of a 3D scaffold made from cotton, which was conjugated with arginyl-glycyl-aspartic acid (RGD), to facilitate the growth and proliferation of mesenchymal stem cells (MSCs). This scaffold allowed the MSCs to adhere and proliferate without compromising their viability or their stem cell markers. A comprehensive analysis investigation of the molecular changes occurring in MSCs adhering to the cotton fibers will contribute to the advancement of therapy. The objective of this study is to analyze the molecular processes occurring in the growth of MSCs on a cotton-RGD conjugated-based scaffold by examining their gene expression profiles. To achieve this, we conducted an experiment where MSCs were seeded with and without the scaffold for a duration of 48 h. Subsequently, cells were collected for RNA extraction, cDNA synthesis, and whole-transcriptomic analysis performed on both populations. Our analysis revealed several upregulated and downregulated differently expressed genes in the MSCs adhering to the scaffold compared with the control cells. Through gene ontology analysis, we were able to identify enriched biological processes, molecular functions, pathways, and protein-protein interactions in these differentially expressed genes. Our data suggest that the scaffold may have the potential to enhance osteogenesis in the MSCs. Furthermore, our results indicate that the scaffold does not induce oxidative stress, inflammation, or aging in the MSCs. These findings provide valuable insights for the application of MSCs in tissue engineering and regenerative medicine.

干细胞疗法为退化或受损组织提供了一种可行的替代治疗方法。干细胞既可单独使用,也可与人工支架结合使用。后者具有结构优势,能使细胞在三维(3D)环境中茁壮成长,与体内自然环境非常相似。在此之前,我们曾公开了一种由棉花制成的三维支架,这种支架与精氨酰-甘氨酰-天冬氨酸(RGD)共轭,可促进间充质干细胞(MSCs)的生长和增殖。这种支架可使间充质干细胞粘附和增殖,而不影响其活力或干细胞标记。对粘附在棉纤维上的间充质干细胞发生的分子变化进行全面分析调查,将有助于促进治疗。本研究的目的是通过研究间充质干细胞的基因表达谱,分析间充质干细胞在棉-RGD共轭基支架上生长的分子过程。为了实现这一目标,我们进行了一项实验,将间叶干细胞分别接种在有支架和无支架的地方 48 小时。我们的分析发现,与对照组细胞相比,粘附在支架上的间充质干细胞中存在多个上调和下调的不同表达基因。通过基因本体分析,我们能够确定这些差异表达基因中富集的生物过程、分子功能、通路和蛋白质-蛋白质相互作用。我们的数据表明,支架可能具有增强间充质干细胞成骨的潜力。此外,我们的研究结果表明,该支架不会诱发间充质干细胞的氧化应激、炎症或衰老。这些发现为间叶干细胞在组织工程和再生医学中的应用提供了宝贵的启示。
{"title":"Transcriptomics Demonstrates Significant Biological Effect of Growing Stem Cells on RGD-Cotton Scaffold.","authors":"Sihem Aouabdi, Taoufik Nedjadi, Rawiah Alsiary, Fouzi Mouffouk, Hifzur Rahman Ansari","doi":"10.1089/ten.TEA.2023.0333","DOIUrl":"10.1089/ten.TEA.2023.0333","url":null,"abstract":"<p><p>Stem cell therapy provides a viable alternative treatment for degenerated or damaged tissue. Stem cells have been used either alone or in conjunction with an artificial scaffold. The latter provides a structural advantage by enabling the cells to thrive in three-dimensional (3D) settings, closely resembling the natural <i>in vivo</i> environments. Previously, we disclosed the development of a 3D scaffold made from cotton, which was conjugated with arginyl-glycyl-aspartic acid (RGD), to facilitate the growth and proliferation of mesenchymal stem cells (MSCs). This scaffold allowed the MSCs to adhere and proliferate without compromising their viability or their stem cell markers. A comprehensive analysis investigation of the molecular changes occurring in MSCs adhering to the cotton fibers will contribute to the advancement of therapy. The objective of this study is to analyze the molecular processes occurring in the growth of MSCs on a cotton-RGD conjugated-based scaffold by examining their gene expression profiles. To achieve this, we conducted an experiment where MSCs were seeded with and without the scaffold for a duration of 48 h. Subsequently, cells were collected for RNA extraction, cDNA synthesis, and whole-transcriptomic analysis performed on both populations. Our analysis revealed several upregulated and downregulated differently expressed genes in the MSCs adhering to the scaffold compared with the control cells. Through gene ontology analysis, we were able to identify enriched biological processes, molecular functions, pathways, and protein-protein interactions in these differentially expressed genes. Our data suggest that the scaffold may have the potential to enhance osteogenesis in the MSCs. Furthermore, our results indicate that the scaffold does not induce oxidative stress, inflammation, or aging in the MSCs. These findings provide valuable insights for the application of MSCs in tissue engineering and regenerative medicine.</p>","PeriodicalId":56375,"journal":{"name":"Tissue Engineering Part A","volume":null,"pages":null},"PeriodicalIF":3.5,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140872899","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Tissue Engineering Part A
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