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Polarised hydroxyapatite- sodium alginate composite as an antibacterial filler matrix 极化羟基磷灰石-海藻酸钠复合材料作为抗菌填料基质
IF 1.8 4区 生物学 Q3 BIOPHYSICS Pub Date : 2025-03-17 DOI: 10.1007/s10867-025-09679-5
Samapika Bhuyan, Subhasmita Swain, Tapash Ranjan Rautray

Bone-substituted composite material based on bioceramics and polymer has enhanced their biological performance with dynamic properties such as bioactivity, biocompatibility, osseointegration, and mechanical stability, which can be used in a controlled drug delivery system for avoiding infections as well as pain. Here in this study, we developed a new approach for inducing antibacterial and osteogenic responses on biomaterial substrates via surface polarisation. The hydroxyapatite- sodium alginate composite was negatively polarised using a corona poling setup and characterised using X-ray diffraction analysis. The thermally stimulated depolarization current study showed a maximum current of 4.74 nA/cm2, observed at a temperature of 480 °C. The wettability of the specimen was measured using contact angle measurements, which demonstrated that the polarised composite specimen exhibited higher water retention ability. The bacterial cell viability test was measured using the 3-(4, 5-dimethylthiazolyl-2)-2, 5-diphenyltetrazolium bromide) assay, which revealed poor bacterial growth on polarised specimens as compared to their unpolarised counterparts. In addition, the osteogenic MG63 cell proliferation showed increased gene expression on polarised specimens. These findings showed that polarising hydroxyapatite- sodium alginate composite could be an excellent option to be used as an antibacterial bone filler matrix for faster healing as it showed both antibacterial and osteogenic activity.

基于生物陶瓷和聚合物的骨替代复合材料具有生物活性、生物相容性、骨整合性和机械稳定性等动态特性,可用于控制药物输送系统,以避免感染和疼痛。在这项研究中,我们开发了一种通过表面极化在生物材料基质上诱导抗菌和成骨反应的新方法。羟基磷灰石-海藻酸钠复合材料使用电晕极化装置进行负极化,并使用x射线衍射分析进行表征。热激去极化电流研究表明,在480℃温度下,最大电流为4.74 nA/cm2。用接触角测量了试样的润湿性,结果表明极化复合试样具有较高的保水能力。细菌细胞活力测试使用3-(4,5 -二甲基噻唑-2)- 2,5 -二苯基溴化四唑)测定法进行测量,结果显示,与未极化的样品相比,极化样品上的细菌生长较差。此外,在极化标本上,成骨MG63细胞增殖表现出基因表达增加。结果表明,极化羟基磷灰石-海藻酸钠复合材料具有抗菌和成骨活性,可作为一种较好的抗菌骨填充基质。
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引用次数: 0
Microplastic contaminant adsorption by graphene oxide layer 氧化石墨烯层对微塑料污染物的吸附
IF 1.8 4区 生物学 Q3 BIOPHYSICS Pub Date : 2025-03-14 DOI: 10.1007/s10867-025-09677-7
Tony Sumaryada, Fasya Nabilah, Faridah Handayasari, Agus Kartono, Hendradi Hardhienata

The increasing prevalence of microplastics in water sources poses significant threats to both human health and environmental sustainability. Bisphenol A (BPA) and polyethylene terephthalate (PET), two hazardous microplastic contaminants, are known to cause endocrine disruption and other health risks. This study investigates the potential of graphene oxide (GO) as an efficient adsorbent for the removal of these contaminants through detailed molecular interaction analysis. The adsorption efficiencies of GO were quantitatively assessed, demonstrating strong binding affinities of ∆G = − 9.50 kcal/mol for BPA and ∆G = − 6.90 kcal/mol for PET. The adsorption process is primarily governed by π-π stacking interactions between the aromatic structure of the microplastics and the polycyclic surface of GO, with additional contributions from hydrogen bonding and van der Waals forces. Computational simulations revealed consistent binding across specific active sites on the GO surface, indicating minimal variation in adsorption performance. These findings highlight the potential of GO-based filtration systems for large-scale water treatment applications, offering a promising approach to mitigating microplastic contamination and ensuring safer water supplies. These findings highlight the potential of GO-based filtration systems for large-scale water treatment applications, offering a promising approach to mitigating microplastic contamination and ensuring safer water supplies. Future research should focus on optimizing GO-based filtration techniques and exploring their long-term environmental impact. 

水源中微塑料的日益普遍对人类健康和环境可持续性都构成了重大威胁。众所周知,双酚 A(BPA)和聚对苯二甲酸乙二醇酯(PET)这两种有害的微塑料污染物会导致内分泌紊乱和其他健康风险。本研究通过详细的分子相互作用分析,研究了氧化石墨烯(GO)作为高效吸附剂去除这些污染物的潜力。对 GO 的吸附效率进行了定量评估,结果表明 GO 与双酚 A 的结合亲和力为 ∆G = - 9.50 kcal/mol,与 PET 的结合亲和力为 ∆G = - 6.90 kcal/mol。吸附过程主要由微塑料的芳香结构与 GO 的多环表面之间的 π-π 堆叠相互作用所控制,另外还有氢键和范德华力的作用。计算模拟显示,GO 表面的特定活性位点之间的结合是一致的,表明吸附性能的变化极小。这些发现凸显了基于 GO 的过滤系统在大规模水处理应用中的潜力,为减轻微塑料污染和确保更安全的供水提供了一种前景广阔的方法。这些发现凸显了基于 GO 的过滤系统在大规模水处理应用中的潜力,为减轻微塑料污染和确保更安全的供水提供了一种前景广阔的方法。未来的研究应侧重于优化基于 GO 的过滤技术,并探索其对环境的长期影响。
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引用次数: 0
Nonlinear physics perspective and essential disease dynamics of EBV infections and the dynamics of EBV-associated diseases 非线性物理学视角和 EBV 感染的基本疾病动力学以及 EBV 相关疾病的动力学
IF 1.8 4区 生物学 Q3 BIOPHYSICS Pub Date : 2025-02-26 DOI: 10.1007/s10867-025-09676-8
Surasak Chiangga, Saman Mongkolsakulvong, Till Daniel Frank

The Epstein-Barr virus affects more than 90% of the world population and, consequently, is a virus whose infection dynamics should not be overlooked. It can cause the disease infectious mononucleosis and comes with other virus-associated diseases and conditions ranging from certain cancers to episodes of fatigue and depression. While previous epidemiological and virological modeling studies have worked out the details of possible infection dynamics scenarios, the current study takes a different approach. Using a nonlinear physics perspective and a fairly general epidemiological model, we identify the essential EBV infection dynamics along its so-called infection order parameter. We demonstrate that the essential dynamics describes the initial path that EBV infections take in the multi-dimensional model space. In particular, we show that the essential dynamics predicts the initial dynamics of the relevant subpopulations and describes how the subpopulations involved in an EBV infection outbreak organize themselves during the outbreak. Intervention and prevention measures are discussed in the context of the nonlinear physics perspective. An adverse synergy effect between two infection rate parameters is identified. An early warning system based on the so-called critical slowing down phenomenon is proposed for EBV infection waves in college and university student populations, which are populations particularly vulnerable to EBV infections.

爱泼斯坦-巴尔病毒影响着全球90%以上的人口,因此,它是一种感染动态不容忽视的病毒。它可以引起传染性单核细胞增多症,并伴有其他与病毒相关的疾病和状况,从某些癌症到疲劳和抑郁发作。虽然以前的流行病学和病毒学建模研究已经确定了可能的感染动力学情景的细节,但当前的研究采用了不同的方法。利用非线性物理视角和相当一般的流行病学模型,我们确定了EBV感染的基本动态,沿着其所谓的感染顺序参数。我们证明了基本动力学描述了EBV感染在多维模型空间中的初始路径。特别是,我们表明基本动力学预测了相关亚群的初始动态,并描述了在爆发期间参与EBV感染爆发的亚群如何组织自己。从非线性物理的角度讨论了干预和预防措施。确定了两个感染率参数之间的不利协同效应。针对EBV易感人群——大学生群体,提出了一种基于临界减速现象的EBV感染波预警系统。
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引用次数: 0
Hemodynamics of asymmetrically stenotic vertebral arteries based on fluid–solid coupling 基于流固耦合的不对称狭窄椎动脉血流动力学
IF 1.8 4区 生物学 Q3 BIOPHYSICS Pub Date : 2025-02-17 DOI: 10.1007/s10867-025-09673-x
Zheng Yilin, Feng Haiquan, He Chen, Su Juan

The study investigates the interaction between vertebral artery stenosis and pulsatile blood flow, with a focus on the mechanical properties and internal dynamics of blood flow. First, an asymmetrical stenosis mathematical model was established to reveal the relationship between the resistance ratio and shear stress ratio and their dependence on stenosis height and length. Next, various stenosis models were constructed using medical imaging data and analyzed through computational fluid dynamics (CFD) and fluid–structure interaction (FSI) methods. Finally, hemodynamic parameters, such as blood flow velocity and time-averaged wall shear stress (TAWSS), along with solid mechanics indicators, including total deformation and von Mises stress, were evaluated. The results indicate that changes in stenosis length and height significantly affect the resistance ratio and shear stress. Whole-segment stenosis in the vertebral artery may lead to thrombosis and intimal damage. In contrast, stenosis at the ostium of the vertebral artery increases the risk of platelet deposition on the vessel wall, potentially triggering atherosclerosis. This could ultimately lead to insufficient blood flow to the brain due to impaired vertebral artery circulation. FSI simulations revealed that elastic vessel walls are more sensitive to high-velocity flows, especially in stenotic and downstream regions. These findings provide critical insights into the effects of stenosis on blood flow and are crucial for developing effective clinical intervention strategies.

本研究探讨了椎动脉狭窄与搏动血流之间的相互作用,重点研究了血流的力学特性和内部动力学。首先,建立了不对称狭窄数学模型,揭示了阻力比和剪应力比与狭窄高度和狭窄长度的关系;其次,利用医学影像数据构建各种狭窄模型,并通过计算流体力学(CFD)和流固耦合(FSI)方法进行分析。最后,评估血流动力学参数,如血流速度和时间平均壁剪切应力(TAWSS),以及固体力学指标,包括总变形和von Mises应力。结果表明,管腔长度和管腔高度的变化对管腔的阻力比和剪应力有显著影响。椎动脉全节段狭窄可导致血栓形成和内膜损伤。相反,椎动脉开口狭窄会增加血小板在血管壁上沉积的风险,可能引发动脉粥样硬化。这可能最终导致由于椎动脉循环受损而导致脑部供血不足。FSI模拟表明,弹性血管壁对高速流动更为敏感,特别是在狭窄和下游区域。这些发现为狭窄对血流的影响提供了重要的见解,对于制定有效的临床干预策略至关重要。
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引用次数: 0
Composition design and performance analysis of binary and ternary Mg-Zn-Ti alloys for biomedical implants 生物医学植入物用二、三元Mg-Zn-Ti合金的成分设计与性能分析
IF 1.8 4区 生物学 Q3 BIOPHYSICS Pub Date : 2025-02-12 DOI: 10.1007/s10867-025-09672-y
Sehrish Mukhtar, Muhammad Kamran, Asima Tayyeb, Faraz Hussain, Muhammad Ishtiaq, Fahad Riaz, Waqas Asghar

Magnesium-based implants are highly valued in the biomedical field for biocompatibility and biodegradability, though their inherent low strength in body fluids is a limitation. This study addresses this by alloying magnesium with zinc and titanium to enhance its properties. Mechanical alloying was used to synthesize binary (Mg-Zn, Mg-Ti) and ternary (Mg-Zn-Ti) alloys, which were then compacted and sintered. The alloy powders, composed of 10 wt% Zn and 5 wt% Ti, were milled at 360 rpm for 10 h. Microstructural analysis revealed uniformly dispersed particles, with SEM confirming spherical and fine particles alongside laminates. XRD identified intermetallic compound formation. The ternary alloy demonstrated superior micro-hardness and Young’s modulus similar to human bone, making it particularly promising for biomedical applications. Incorporating zinc and titanium into the magnesium matrix resulted in a ternary alloy that outperformed its binary counterparts.

镁基植入物因其生物相容性和生物降解性在生物医学领域受到高度重视,尽管其在体液中固有的低强度是一个限制。本研究通过将镁与锌和钛合金化以提高其性能来解决这一问题。采用机械合金化法制备了二元(Mg-Zn, Mg-Ti)和三元(Mg-Zn- ti)合金,并对其进行压实和烧结。合金粉末由10 wt% Zn和5 wt% Ti组成,在360转/分钟的转速下研磨10小时。显微组织分析显示均匀分散的颗粒,扫描电镜证实了层合板周围的球形和细颗粒。XRD鉴定了金属间化合物的形成。三元合金表现出优异的显微硬度和杨氏模量,与人骨相似,使其在生物医学应用方面特别有前景。将锌和钛结合到镁基体中产生的三元合金性能优于二元合金。
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引用次数: 0
Bioconvection of a radiating and reacting nanofluid flow past a nonlinear stretchable permeable sheet in a porous medium 辐射和反应的纳米流体流过多孔介质中的非线性可拉伸可渗透片的生物对流。
IF 1.8 4区 生物学 Q3 BIOPHYSICS Pub Date : 2025-01-30 DOI: 10.1007/s10867-025-09669-7
Kavita Jat, Kalpna Sharma, Prasun Choudhary, Pooja Soni

This study evaluates the unsteady laminar flow and heat and mass transfer of a nanofluid in the appearance of gyrotactic microorganisms. In this analysis, using the Darcy–Forchheimer flow inside the vicinity of a nonlinearly stretched surface with Brownian motion and thermophoresis impacts. Similarity conversion is familiar with reduced governing models into dimensionless variables, and “bvp4c,” a MATLAB solver, is employed to find the computational outputs of this analysis. This analysis reports that the use of nanofluids provides better thermal characteristics which are helpful to enhance the heat transfer coefficient. Graphs for this analysis are created for distinct values of non-dimensionless parameters, whereas the coefficient of surface drag, heat flux, mass flux, and rate of microorganism density are all interpreted numerically and graphically. The high level of resistance provided by velocity slip and Forchheimer parameters leads to a decrease in velocity curves while an increment is seen in the temperature profile. It is also remarked that bioconvection Peclet number induces a decrement in the density distribution of motile microorganisms. In addition, it has been observed that the Nusselt number for a nonlinear stretching sheet is better as compared to a linear stretching sheet.

本研究评估了微陀螺微生物表面纳米流体的非定常层流和传热传质。在本分析中,利用达西-福希海默流附近的非线性拉伸表面与布朗运动和热泳运动的影响。相似转换熟悉将控制模型简化为无量纲变量,并使用MATLAB求解器“bvp4c”来查找此分析的计算输出。这一分析报告了纳米流体的使用提供了更好的热特性,有助于提高传热系数。这种分析的图形是为不同的非量纲参数值创建的,而表面阻力系数、热通量、质量通量和微生物密度率都是用数字和图形来解释的。速度滑移和Forchheimer参数提供的高水平阻力导致速度曲线下降,而温度曲线增加。同时指出,生物对流佩莱特数引起了可运动微生物密度分布的衰减。此外,我们还观察到非线性拉伸片的努塞尔数比线性拉伸片的要好。
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引用次数: 0
Effects of stalk orientation and size of trapped bead on force–velocity relation of kinesin motor determined using single molecule optical trapping methods 用单分子光捕获法测定了被捕获头的轴向和大小对马达力-速度关系的影响。
IF 1.8 4区 生物学 Q3 BIOPHYSICS Pub Date : 2025-01-27 DOI: 10.1007/s10867-025-09671-z
Ping Xie

Conventional kinesin protein is a prototypical biological molecular motor that can step processively on microtubules towards the plus end by hydrolyzing ATP molecules, performing the biological function of intracellular transports. An important characteristic of the kinesin is the load dependence of its velocity, which is usually measured by using the single molecule optical trapping method with a large-sized bead attached to the motor stalk. Puzzlingly, even for the same kinesin, some experiments showed that the velocity is nearly independent of the forward load whereas others showed that the velocity decreases evidently with the increase in the magnitude of the forward load. Here, a theoretical explanation is provided of why different experiments give different dependencies of the velocity on the forward load. It is shown that both the stalk orientation and bead size play a critical role in the different dependencies. Additionally, the reason why the optical trapping experiments with the movable trap usually gave a sigmoid form of the velocity versus backward load whereas with the fixed trap gave a nearly linear form is also explained theoretically. The study is not only critical to the understanding of the response of the motor to the load but also provides strong insights into the coupling mechanism of the motor.

Graphical Abstract

传统的驱动蛋白是一种典型的生物分子马达,它可以通过水解 ATP 分子在微管上向正端移动,发挥细胞内运输的生物功能。驱动蛋白的一个重要特征是其速度与负载有关,通常使用单分子光学捕获法测量其速度,在马达柄上连接一个大尺寸的珠子。令人费解的是,即使是同样的驱动蛋白,有些实验表明其速度几乎与前向载荷无关,而有些实验则表明其速度随着前向载荷的增加而明显下降。在此,我们从理论上解释了为什么不同的实验得出的速度与前向载荷的关系不同。实验结果表明,在不同的依赖关系中,柄的方向和珠子的大小都起着至关重要的作用。此外,还从理论上解释了为什么使用可移动捕集器进行的光学捕集实验通常给出速度与后向载荷的曲线,而使用固定捕集器则给出近似线性的曲线。这项研究不仅对理解电机对负载的响应至关重要,而且对电机的耦合机制提供了深刻的见解。
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引用次数: 0
Two-fluid flow of blood in a curved stenotic artery under pulsating condition 弯曲狭窄动脉在搏动状态下的双流体血流
IF 1.8 4区 生物学 Q3 BIOPHYSICS Pub Date : 2025-01-22 DOI: 10.1007/s10867-024-09668-0
Muhammad Shahzad Shabbir, Meriyem Hussain

The present article focuses on the analysis of the two-phase flow of blood via a stenosed artery under the influence of a pulsatile pressure gradient. The core and plasma regions of flow are modeled using the constitutive relations of Herschel-Bulkley and the Newtonian fluids, respectively. The problem is modeled in a cylindrical coordinate system. A modest stenosis assumption is used to simplify the non-dimensional governing equations of the flow issue. An explicit finite difference approach is used to solve the resultant nonlinear system of differential equations while accounting for the provided boundary conditions. After the necessary adjustments have been made to the crucial non-dimensional parameters, an analysis of the data behind the huge image, such as axial velocity, temperature field, concentration wall shear stress, flow rate, and flow impedance, is conducted. The current study shows that the curvature of blood vessels plays a significant role in influencing blood velocity. Specifically, a unit increase in the curvature radius results in a 24% rise in blood velocity.

本文着重分析了脉动压力梯度影响下血管狭窄的两相血流。流动的核心和等离子体区域分别使用赫歇尔-巴尔克利和牛顿流体的本构关系进行建模。该问题在柱坐标系中建模。采用适度狭窄假设来简化流动问题的无量纲控制方程。在考虑给定边界条件的情况下,采用显式有限差分法求解所得到的非线性微分方程组。在对关键的无量纲参数进行必要的调整后,对巨幅图像背后的数据进行分析,如轴向速度、温度场、浓壁剪应力、流速、流动阻抗等。目前的研究表明,血管的曲率对血流速度有重要的影响。具体来说,曲率半径每增加一个单位,血流速度就会增加24%。
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引用次数: 0
Dynamics of predator-prey system with the consequences of double Allee effect in prey population 捕食者-食饵系统动态与食饵种群双狭缝效应的影响
IF 1.8 4区 生物学 Q3 BIOPHYSICS Pub Date : 2025-01-20 DOI: 10.1007/s10867-025-09670-0
Chirodeep Mondal, Ritwika Mondal, Dipak Kesh, Debasis Mukherjee

A underlying complex dynamical behavior of double Allee effects in predator-prey system is studied in this article to understand the predator-prey relation more intensely from different aspects. We first propose a system with the Caputo sense fractional-order predator-prey system incorporating the Allee effect in prey populations to explain how the memory effect can change the different emergent states. Local stability analysis is analyzed by applying Matignon’s condition for the FDE system. Further, we consider a discrete-time system to show the influence of double Allee effects in non-overlapping generations. For discrete-time system, different bifurcations like Neimark-Sacker, flip bifurcations, irregularity in periodic oscillations, are observed. Irregularity occurs through a period-doubling cascade which is a common route to chaos in a dynamical sense. Maximum Lyapunov exponent (MLE) is shown to illustrate the irregular behaviors of discrete-time systems. The Allee effect influences system stability where the strong Allee effect enhances system stability whereas the stability is lost for the weak Allee effect. The extinction risk of populations in the presence of the Allee effect is a concerning issue. We have insight into how all populations survive along with stable extinction equilibrium. Our proposed systems exhibit different alternative states. Multiple stable attractor basins are plotted to depict the different alternative states of the FDE system as well as the discrete-time system. Initial population densities play a key role in the coexistence of all the populations otherwise there is a risk of species extinction. Besides analytical results, numerical simulation is performed to valid our analytical findings of different dynamical states like bifurcation, stability, irregularity as well as multi-stability.

本文研究了捕食者-食饵系统中双通道效应的潜在复杂动力学行为,以期从不同角度更深入地理解捕食者-食饵关系。我们首先提出了一个包含猎物种群中Allee效应的Caputo感知分数阶捕食者-猎物系统来解释记忆效应如何改变不同的突现状态。应用matgnon条件对FDE系统进行了局部稳定性分析。此外,我们考虑了一个离散时间系统,以显示双Allee效应在非重叠代中的影响。对于离散系统,观察到不同的分岔,如neimmark - sacker分岔、翻转分岔、周期振荡中的不规则性。在动力学意义上,不规则性通过周期加倍级联发生,这是混沌的常见途径。用最大李雅普诺夫指数(MLE)来描述离散系统的不规则行为。Allee效应影响系统稳定性,强Allee效应增强系统稳定性,弱Allee效应使系统失去稳定性。在Allee效应存在的情况下,种群的灭绝风险是一个值得关注的问题。我们了解了所有种群是如何在稳定的灭绝平衡中生存下来的。我们提出的系统表现出不同的可选状态。绘制了多个稳定吸引子盆地来描述FDE系统和离散时间系统的不同可选状态。初始种群密度对所有种群的共存起着关键作用,否则就有物种灭绝的危险。在分析结果的基础上,通过数值模拟验证了分岔、稳定性、不规则性和多稳定性等不同动力状态的分析结果。
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引用次数: 0
Analysis of tuberculosis model with indirect environmental transmission and optimal control 带有间接环境传播和优化控制的结核病模型分析
IF 1.8 4区 生物学 Q3 BIOPHYSICS Pub Date : 2024-11-27 DOI: 10.1007/s10867-024-09667-1
Xianyi Zhao, Hui Cao, Danfeng Pang

In this paper, the dynamic behaviors of tuberculosis in the context of indirect environmental transmission are discussed by establishing the SEIRB epidemic model. The basic reproduction number is computed by employing the next-generation matrix approach. The global stability of disease-free equilibrium and endemic equilibrium is proved by constructing the Lyapunov function and the application of LaSalle’s invariance principle. It shows that when the basic reproduction number is greater than 1, tuberculosis will spread among the population. When the basic reproduction number is less than 1, tuberculosis will disappear. Finally, an optimal control problem is constructed by using the extended model, which reveals the spread of tuberculosis can be effectively controlled by eliminating Mycobacterium tuberculosis in the environment and controlling tuberculosis patients at the same time. Numerical example results show the effectiveness of the optimization strategies.

本文通过建立 SEIRB 流行病模型,讨论了间接环境传播背景下结核病的动态行为。采用下一代矩阵方法计算了基本繁殖数。通过构建 Lyapunov 函数和应用拉萨尔不变性原理,证明了无病平衡和流行平衡的全局稳定性。结果表明,当基本繁殖数大于 1 时,结核病将在人群中传播。当基本繁殖数小于 1 时,结核病将消失。最后,利用扩展模型构建了一个最优控制问题,揭示了通过消除环境中的结核分枝杆菌并同时控制结核病患者,可以有效控制结核病的传播。数值示例结果表明了优化策略的有效性。
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引用次数: 0
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Journal of Biological Physics
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