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Design of the novel calix[n]BODIPY molecules (n = 4–8): TDDFT and AIM study 新型杯[n]BODIPY分子(n = 4-8)的设计:TDDFT和AIM研究
IF 2.3 4区 化学 Q2 Agricultural and Biological Sciences Pub Date : 2022-04-04 DOI: 10.1007/s10847-022-01139-0
Hamid Hadi, Hamid Reza Shamlouei

In this study, based on BODIPY molecule, new calix-like structures with significant electrical and optical properties were designed. These calix-like compounds containing BODIPY seems to be highly probable and appear to be thermodynamically stable. After structural optimization, absence of imaginary frequencies and the values of cohesive energies were studied which two important evidences about their stability were obtained. Decreasing the values of Eg and improvement of optical properties as the result of enlarging the oligomers size is considerable result. Between designed structures the calix[8]BODIPY is have smallest value of Eg and is more optically active molecule which has intense absorptions in visible region of light. Two separate computational methods were used to confirm the accuracy of the obtained data. Finally, it was shown that by increasing the number of BODIPY units in calix[n]BODIPY structure, the strength of hydrogen bond in the lower rims of it increase. Although the designed compounds have not yet been synthesized, they are highly probable due to the high stability of the compounds containing BODIPY and appear to be good synthetic chemical targets.

本研究以BODIPY分子为基础,设计了具有显著电学和光学性能的新型杯状结构。这些含有BODIPY的杯状化合物似乎是极有可能的,并且似乎是热力学稳定的。结构优化后,研究了无虚频率和内聚能的取值,得到了其稳定性的两个重要证据。增大低聚物尺寸可以降低Eg值,改善光学性能。在所设计的结构中,杯[8]BODIPY具有最小的Eg值,是一种更具有光学活性的分子,在可见光区域具有强烈的吸收。使用两种不同的计算方法来确认所获得数据的准确性。最后,研究表明,增加杯[n]BODIPY结构中BODIPY单元的数目,可以增加杯[n]BODIPY结构下缘的氢键强度。虽然所设计的化合物尚未被合成,但由于含有BODIPY的化合物的高稳定性,它们很可能是很好的合成化学靶标。
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引用次数: 3
Synthesis of [2+2] Schiff base macrocycles by a solvent templating strategy and halogen bonding directed assembly 溶剂模板和卤素键定向组装合成[2+2]席夫碱大环
IF 2.3 4区 化学 Q2 Agricultural and Biological Sciences Pub Date : 2022-03-31 DOI: 10.1007/s10847-022-01137-2
Chloe M. Taylor, Nathan L. Kilah

Schiff base imine condensations are a useful tool for macrocycle synthesis and applications within supramolecular chemistry. Here we address the mixtures of products that can arise from template free synthesis using dicarbonylheterocycles and diamines, and look to develop metal-free template methods for selective macrocycle formation. A range of alkyl α,ω-diamines were combined with phenanthroline and pyridine heterocyclic dicarbaldehydes under standard literature conditions. The reaction conditions were modified to demonstrate a relationship between choice of solvent and product equilibria. It was observed that benzene and toluene could shift a mixture of products and unreacted starting materials to form predominantly one imine product for a number of systems. Once the macrocyclic products had been characterized in selected solvents, iodinated halogen bonding guest molecules were added to direct macrocycle assemblies using non-covalent interactions. Studies to investigate host – guest suitability and halogen bond interactions were conducted, and it was found that tetraiodoethylene had an influence on the formation of a phenanthroline based macrocycle. Proof of concept experiments were performed to show the influence of the guest molecule, tetraiodoethylene, on the macrocyclic products formed under competitive dynamic combinatorial chemistry conditions.

希夫碱亚胺缩合反应是大环合成和超分子化学研究的重要手段。在这里,我们讨论了使用二羰基杂环和二胺的无模板合成可能产生的产物混合物,并寻求开发用于选择性大环形成的无金属模板方法。在标准文献条件下,一系列烷基α,ω-二胺与邻菲罗啉和吡啶类杂环二乙醛结合。对反应条件进行了改进,以证明溶剂的选择与产物平衡之间的关系。据观察,苯和甲苯可以使产物和未反应起始物质的混合物在许多体系中主要形成一种亚胺产物。一旦在选定的溶剂中对大环产物进行了表征,就可以使用非共价相互作用将碘化卤素键客体分子添加到直接的大环组装中。研究了主客体适宜性和卤素键相互作用,发现四乙烯对菲罗啉基大环的形成有影响。通过概念验证实验证明了客体分子四乙烯对竞争动态组合化学条件下形成的大环产物的影响。
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引用次数: 1
Template synthesis of a rare 14-membered macrocyclic complex using cadmium(II) ion as a collector 以镉(II)离子为捕收剂的模板合成一种罕见的14元大环配合物
IF 2.3 4区 化学 Q2 Agricultural and Biological Sciences Pub Date : 2022-03-22 DOI: 10.1007/s10847-022-01136-3
Sima Dorjani, Zahra Mardani, Keyvan Moeini, Cameron Carpenter-Warren

In this work, a new macrocyclic cadmium complex, [Cd(ACE)I]2[CdI4] (1); ACE: 1,3,6,10,12,15-hexaazatricyclo[13.3.1.16,10]eicosane, was prepared by template method and characterized by elemental analysis, FT-IR spectroscopy and single-crystal X-ray diffraction. Structural analysis of the complex 1 revealed an ionic complex containing two cadmium atoms with tetrahedral (in anionic portion) and square-pyramidal (in cationic portion) geometries. Using the DFT calculations, thermodynamic stability of the first-row and group 12 metal complexes containing ACE ligand was investigated and then validated by comparing with the CSD analogues. Charge distribution pattern of ACE ligand was compared with cationic unit of 1 by NBO analysis to study of the charge variation of ligand after complexation.

Graphical abstract

本文研究了一种新的大环镉配合物[Cd(ACE)I]2[CdI4] (1);采用模板法制备了ACE: 1,3,6,10,12,15-六氮杂环[13.3.1.16,10]二十烷,并用元素分析、FT-IR光谱和单晶x射线衍射对其进行了表征。对配合物1的结构分析表明,该离子配合物含有两个镉原子,具有四面体(阴离子部分)和方锥体(阳离子部分)的几何形状。通过DFT计算,研究了含ACE配体的第一行和第12族金属配合物的热力学稳定性,并与CSD类似物进行了比较。通过NBO分析,将ACE配体的电荷分布模式与阳离子单位1进行比较,研究配体络合后的电荷变化。图形抽象
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引用次数: 0
Calixarenes: recent progress in supramolecular chemistry for application in cancer therapy 杯芳烃:超分子化学在癌症治疗中的应用进展
IF 2.3 4区 化学 Q2 Agricultural and Biological Sciences Pub Date : 2022-03-02 DOI: 10.1007/s10847-022-01134-5
Aysen Isik, Mehmet Oguz, Ahmet Kocak, Mustafa Yilmaz

Cancer is one of the leading causes of death worldwide, and the limited success of currently used anticancer drugs is a driving force for the search for new compounds with anticancer potential. Calixarenes make up a fascinating class of macrocycles that find a wide range of biological applications in supramolecular chemistry. Especially in recent years, the anticancer activity of various calixarene derivatives has been reported by many researchers. The aim of this review article is to find relatively simple, efficient, and synthetic methods for the preparation of macrocyclic compounds containing various pharmacophoric groups to produce new and effective anticancer materials in cancer research and to investigate the usability of calixarene-based supramolecular in cancer research.

癌症是世界范围内导致死亡的主要原因之一,目前使用的抗癌药物的有限成功是寻找具有抗癌潜力的新化合物的动力。杯芳烃构成了一类令人着迷的大环,在超分子化学中有着广泛的生物应用。特别是近年来,各种杯芳烃衍生物的抗癌活性被许多研究者报道。本文的目的是寻找相对简单、高效的合成方法来制备含有多种药理基团的大环化合物,为癌症研究提供新的有效的抗癌材料,并探讨杯芳烃基超分子在癌症研究中的应用价值。
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引用次数: 2
Three 18-membered macrocyclic diamides with differing donor atoms and backbone substituents 三个十八元大环二胺具有不同的供体原子和主取代基
IF 2.3 4区 化学 Q2 Agricultural and Biological Sciences Pub Date : 2022-02-22 DOI: 10.1007/s10847-022-01133-6
Gary L. N. Smith, Douglas R. Powell, Michelle D. Moser, Richard W. Taylor

The crystal structures are reported for 1,4,10,13-tetraoxa-7,16-diazacyclooctadecane-6,17-dione, (C12H22N2O6), (I), dibenzo[e,q][1,4,10,13,7,16] tetraoxadiazacyclooctadecine-6,13-dione, (C20H22N2O6), (II) and 1,4-dioxa-10,13-dithia-7,16-diazacyclooctadecane-8,15-dione, (C12H22N2O4S2), (III). Solid-state structures show different types of hydrogen bonding for all three structures. In I, there are two intermolecular hydrogen bonds between an amide and carbonyl [N–H···O = 2.8206(11) Å and 2.8637(11) Å] and two intermolecular hydrogen bonds between an amide and ether [N–H···O = 2.9570(11) Å and 3.0067(11) Å]. There are two intramolecular hydrogen bonds between amide and ether oxygens [N–H···O = 2.589(3) Å and 2.623(4) Å] in II. Molecule III has a mixture of intramolecular hydrogen bonds between an amide and thioether [N–H···S = 3.0501(18) Å] and intermolecular hydrogen bonds between an amide and carbonyl [N–H···O = 2.835(2) Å].

报道了1,4,10,13-四氧嘧啶-7,16-二氮杂环十二烷-6,17-二酮,(C12H22N2O6), (I),二苯并[e,q][1,4,10,13,13,7,16]四氧杂环十二烷-6,13-二酮,(C20H22N2O6), (II)和1,4-二氧杂环-10,13-二硫-7,16-二氮杂环十二烷-8,15-二酮,(C12H22N2O4S2), (III)的晶体结构。这三种结构的固态结构显示出不同类型的氢键。在I中,酰胺和羰基之间存在两个分子间氢键[N-H··O = 2.8206(11) Å和2.8637(11)Å],酰胺和醚之间存在两个分子间氢键[N-H··O = 2.9570(11) Å和3.0067(11)Å]。在II中,酰胺氧和醚氧之间存在两个分子内氢键[N-H···O = 2.589(3) Å和2.623(4)Å]。分子III由酰胺和硫醚之间的分子内氢键[N-H···S = 3.0501(18) Å]和酰胺和羰基之间的分子间氢键[N-H···O = 2.835(2) Å]组成。
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引用次数: 0
Development of aromatic ethers as solvents for a calix[6]arene derivative and extraction of amino acids and proteins 芳香醚作为杯[6]芳烃衍生物溶剂的发展及氨基酸和蛋白质的提取
IF 2.3 4区 化学 Q2 Agricultural and Biological Sciences Pub Date : 2022-02-21 DOI: 10.1007/s10847-022-01132-7
Tatsuya Oshima, Tokiya Asano, Asuka Inada, Keisuke Ohto,  Jumina

Calixarene derivatives are excellent host compounds for ionic species in liquid–liquid extraction. However, many studies using calixarene derivatives have been conducted using highly toxic chloroform as a solvent because of their poor solubility in typical hydrocarbons. In the present study, aromatic ethers were developed as solvents for calixarene derivatives to enhance their industrial applicability. The solubility of the calix[6]arene carboxylic acid derivative tOct[6]CH2COOH in 1-octoxybenzene (OB) and 1-butoxybenzene (BB) was 11.3 mM and 24.9 mM, respectively. The cationic guest molecule tryptophan methyl ester was extracted using the tOct[6]CH2COOH host in OB and BB. The cationic lysine-rich protein cytochrome c was also extracted using tOct[6]CH2COOH in BB as shown for tOct[6]CH2COOH in chloroform in previous studies. However, cytochrome c was not extracted using tOct[6]CH2COOH in OB and instead, precipitated. As tOct[6]CH2COOH stabilizes the ammonium group of biomolecules because of its suitable cavity size, the extraction of the tryptophan ester and cytochrome c using tOct[6]CH2COOH was much higher than those using the corresponding calix[4]arene and calix[8]arene derivatives. These results confirm that aromatic ethers are potential solvents for calixarene derivatives for the extraction of biomolecules.

杯芳烃衍生物是液-液萃取中离子种类的优良宿主化合物。然而,由于杯芳烃衍生物在典型碳氢化合物中的溶解度差,许多使用杯芳烃衍生物的研究都是使用剧毒的氯仿作为溶剂进行的。本研究将芳香醚作为杯芳烃衍生物的溶剂,以提高其工业适用性。杯[6]芳烃羧酸衍生物tOct[6]CH2COOH在1-八苯(OB)和1-丁氧基苯(BB)中的溶解度分别为11.3 mM和24.9 mM。在OB和BB中用tOct[6]CH2COOH宿主提取阳离子客体分子色氨酸甲酯。在BB中用tOct[6]CH2COOH提取阳离子型富赖氨酸蛋白细胞色素c,如以往研究中在氯仿中用tOct[6]CH2COOH提取。然而,在OB中使用tOct[6]CH2COOH并没有提取细胞色素c,而是沉淀。由于tOct[6]CH2COOH因其适宜的腔体大小而稳定了生物分子的铵基,因此使用tOct[6]CH2COOH提取色氨酸酯和细胞色素c的效率远高于使用相应的杯[4]芳烃和杯[8]芳烃衍生物。这些结果证实芳香醚是杯芳烃衍生物萃取生物分子的潜在溶剂。
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引用次数: 2
CoIIIcorrole: versatile synthetic methods and wide range of applications 氯仿:合成方法多样,应用范围广
IF 2.3 4区 化学 Q2 Agricultural and Biological Sciences Pub Date : 2022-02-04 DOI: 10.1007/s10847-021-01127-w
Tingting Gu, Zhen Zhang, Shengyu Zhang, Weihua Zhu, Xu Liang

This review introduces the synthesis, properties and applications of CoIIIcorroles. The synthesis methods are containing A2B type, A3 type, ABC type, Hangman H3corrole and H3biscorrole synthesis and their metal-inserting reactions. Also, the spectroscopic and electrochemical properties of CoIIIcorroles were also described. However, the most important part of this paper is about the application of CoIIIcorroles, including the development of sustainable and pollution-free chemical energy sources, the degradation of environmentally harmful organochlorides, and the oxidation of alkanes.

本文综述了三羧基氯的合成、性质及应用。合成方法有A2B型、A3型、ABC型、Hangman H3corrole和H3biscorrole合成及其插入金属反应。此外,还描述了CoIIIcorroles的光谱和电化学性质。然而,本文最重要的部分是关于CoIIIcorroles的应用,包括可持续和无公害的化学能源的开发,对环境有害的有机氯化物的降解和烷烃的氧化。
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引用次数: 0
Organic porous solid as promising iodine capture materials 有机多孔固体是很有前途的碘捕获材料
IF 2.3 4区 化学 Q2 Agricultural and Biological Sciences Pub Date : 2022-01-23 DOI: 10.1007/s10847-022-01128-3
Ya-Nan Yu, Zheng Yin, Li-Hui Cao, Yang-Min Ma

Facing the dual pressure of increasing global energy demand and heavy task in carbon emission reduction on schedule, nuclear renaissance is being seriously discussed as transitive choice before full renewable energy supply, yet there is a crucial concern about radioactive safety. The treatment of radioactive iodine is particularly important and challenging because of its high ratio in fission product, extremely long radioactive periods up to several millions of years, as well as easy diffusion in the whole ecosystem. Given that several challenge including easy sublimation, high water solubility, diverse existing species of I2, I, I2n+1 and organic iodine, biocompatibility and strong aggregation in thyroid, rapid capture and permanent storage of iodine is requested. Comparing to inorganic adsorbents of zeolite and inorganic–organic hybrid MOFs, pure organic porous solid are emerging as new and promising iodine capture material. Their high iodine affinity and adsorption capacity, good stability in various environments, facile modification and functionalization, intrinsic structural flexibility guaranteed the outstanding performance in iodine capture. Four main categories of organic cages, supramolecular framework connected by weak interaction, covalent organic frameworks and polymers with intrinsic microporosity were summarized and discussed, from the viewpoints of design principles, iodine capture performance, and adsorbent-iodine interactions. As the main prospect, we hope this work will attracting more researchers to study porous organic materials and address the challenge of effective capture of radioactive iodine.

面对全球能源需求不断增长和碳减排任务如期完成的双重压力,核能复兴作为可再生能源全面供应前的过渡选择正在被认真讨论,但其放射性安全问题却备受关注。放射性碘的处理尤其重要和具有挑战性,因为它在裂变产物中所占比例高,放射性周期极长,长达数百万年,并且易于在整个生态系统中扩散。考虑到易升华、高水溶性、I2、I−、I2n+1−和有机碘种类多样、生物相容性和在甲状腺中的强聚集性等挑战,需要快速捕获和永久储存碘。与无机吸附剂沸石和无机-有机杂化MOFs相比,纯有机多孔固体是一种新型的有前途的碘捕获材料。它们具有高的碘亲和力和吸附能力,在各种环境中具有良好的稳定性,易于修饰和功能化,固有的结构灵活性保证了它们在碘捕获方面的优异性能。从设计原理、吸附性能、吸附剂-碘相互作用等方面对有机笼、弱相互作用连接的超分子框架、共价有机框架和具有固有微孔的聚合物四大类进行了综述和讨论。作为主要前景,我们希望这项工作能够吸引更多的研究人员来研究多孔有机材料,并解决有效捕获放射性碘的挑战。
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引用次数: 9
Preparation and recognition property of an acyclic cucurbit[n]uril dimer 一种无环葫芦[n]脲二聚体的制备及其识别性能
IF 2.3 4区 化学 Q2 Agricultural and Biological Sciences Pub Date : 2022-01-21 DOI: 10.1007/s10847-022-01130-9
Fang Zhou, Da Ma, Yamin Liu

A new acyclic cucurbit[n]uril (CB[n]) dimer is synthesized by copper-catalyzed azide-alkyne cycloaddition or “click” reaction. The acyclic CB[n] dimer possesses two cavities, and is able to encapsulate two guest molecules simultaneously. This dimer is discovered to be high affinity host molecule for a wide variety of dyes, pharmaceutical drugs and guest molecules.

采用铜催化叠氮化物-炔环加成或“咔嗒”反应合成了一种新的无环葫芦[n]脲(CB[n])二聚体。无环CB[n]二聚体具有两个空腔,能够同时包封两个客体分子。这种二聚体被发现是对多种染料、药物和客体分子具有高亲和力的宿主分子。
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引用次数: 1
Spectral studies of protonated and anionic forms of porphyrins with an asymmetric substitution system 不对称取代系统中质子化和阴离子形式卟啉的光谱研究
IF 2.3 4区 化学 Q2 Agricultural and Biological Sciences Pub Date : 2022-01-21 DOI: 10.1007/s10847-022-01131-8
Yulia B. Ivanova, Svetlana G. Pukhovskaya, Alexey V. Lyubimtsev, Anna O. Plotnikova, Sergei A. Syrbu

The directed synthesis of asymmetrically substituted porphyrins—tetraphenylporphyrine derivatives containing amino acid residues as a functional group, which can be used as “anchor” groups, for incorporation into the structure of a protein molecule, was carried out. The obtained compounds were characterized by a number of spectral methods confirming their structure and purity. Their base and acid ionization constants in the AN–HClO4 and DMSO–potassium cryptate (KOH[222])—systems were measured by spectrophotometric titration. It was found that the asymmetric substitution architecture contributed to the stabilization of the protonated forms of porphyrins. This allowed, for the first time, to extract and spectrally characterize the mono- and doubly-protonated forms (H3P+ and H4P2+) of each ligands in the AN–HClO4 system. The analysis of the spectral changes of the monoamino derivative led to identify three stages of the protonation, which first involves the nitrogen atom of the periphery substituent (pKb = 13.26) and then the central nitrogen atoms of the macrocycle (pKb1 = 11.50; pKb2 = 9.65; pKb1,2 = 21.15). The relative stability of the first intermediate is assumed to be caused by charge delocalization. The electron-donor nature of the solvent in the DMSO–KOH [222] system led to the leveling of the ionization constants for the first and second stages, which allowed us to determine only the total values for the porphyrins studied. The successive stages of acid–base interactions were analyzed in the article.

Graphical abstract

定向合成了以氨基酸残基为官能团的不对称取代卟啉-四苯基卟啉衍生物,该衍生物可以作为“锚”基团,结合到蛋白质分子结构中。用多种光谱方法对所得化合物进行了表征,证实了它们的结构和纯度。用分光光度滴定法测定了它们在AN-HClO4和dmso -隐酸钾(KOH[222])体系中的碱和酸电离常数。发现不对称取代结构有助于卟啉质子化形式的稳定。这使得首次提取和光谱表征了AN-HClO4体系中每个配体的单质子形式和双质子形式(H3P+和H4P2+)。通过对单氨基衍生物的光谱变化分析,确定了质子化的三个阶段,首先是外围取代基的氮原子(pKb = 13.26),然后是大环的中心氮原子(pKb1 = 11.50;pKb2 = 9.65;pKb1,2 = 21.15)。假设第一中间体的相对稳定性是由电荷离域引起的。DMSO-KOH[222]体系中溶剂的电子给体性质导致第一和第二阶段的电离常数趋于平衡,这使我们能够仅确定所研究的卟啉的总价值。本文分析了酸碱相互作用的各个阶段。图形抽象
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引用次数: 2
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Journal of Inclusion Phenomena and Macrocyclic Chemistry
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