Pub Date : 2024-10-31DOI: 10.1021/acs.analchem.4c0427610.1021/acs.analchem.4c04276
Ying Jie Zheng, Jun Jiang Luo, Hao Lin Zou, Kuoran Xing, Hong Qun Luo, Zhong Feng Gao, Nian Bing Li*, David Tai Leong* and Bang Lin Li*,
The coffee-ring effect is an eye-catching circle originating from a material-suspended liquid droplet at a solid substrate after liquid evaporation, but the low speediness has restricted practical applications. When nanomaterial aqueous solutions are dropped onto porous nitrocellulose (NC), the liquid is immediately absorbed through the porous tunnels of paper fibers, and nanomaterials are rapidly enriched on the contact lines between droplets and membranes. We called this ultrafast variant of the coffee ring effect the “tunneling coffee ring” (TCR). When nanomaterial sizes are smaller than that of pores, a larger-diameter ring of nanomaterials quickly materializes. The real-time particle size-dependent TCRs and liquid diffusion rings exhibit a dual-ring pattern on the NC membrane. The tunneling speed of the capillary effect is so fast that the pattern appears within seconds. We apply the TCR effect as a size-surface affinity-particle/fluid separation sensor for bacteria. Dextran-modified Au and MoS2 nanostructures are proposed to be antibody-free microbe kits. Our TCR effect is used to distinguish between particles of different sizes and affinities, which are highly relevant in complicated systems without electricity and equipment in resource-poor settings.
{"title":"Exploiting the Tunneling Coffee Ring Effect of Universal Colorimetric Nanomaterials for Ultrafast On-Site Microbial Monitoring","authors":"Ying Jie Zheng, Jun Jiang Luo, Hao Lin Zou, Kuoran Xing, Hong Qun Luo, Zhong Feng Gao, Nian Bing Li*, David Tai Leong* and Bang Lin Li*, ","doi":"10.1021/acs.analchem.4c0427610.1021/acs.analchem.4c04276","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c04276https://doi.org/10.1021/acs.analchem.4c04276","url":null,"abstract":"<p >The coffee-ring effect is an eye-catching circle originating from a material-suspended liquid droplet at a solid substrate after liquid evaporation, but the low speediness has restricted practical applications. When nanomaterial aqueous solutions are dropped onto porous nitrocellulose (NC), the liquid is immediately absorbed through the porous tunnels of paper fibers, and nanomaterials are rapidly enriched on the contact lines between droplets and membranes. We called this ultrafast variant of the coffee ring effect the “tunneling coffee ring” (TCR). When nanomaterial sizes are smaller than that of pores, a larger-diameter ring of nanomaterials quickly materializes. The real-time particle size-dependent TCRs and liquid diffusion rings exhibit a dual-ring pattern on the NC membrane. The tunneling speed of the capillary effect is so fast that the pattern appears within seconds. We apply the TCR effect as a size-surface affinity-particle/fluid separation sensor for bacteria. Dextran-modified Au and MoS<sub>2</sub> nanostructures are proposed to be antibody-free microbe kits. Our TCR effect is used to distinguish between particles of different sizes and affinities, which are highly relevant in complicated systems without electricity and equipment in resource-poor settings.</p>","PeriodicalId":6,"journal":{"name":"ACS Applied Nano Materials","volume":"96 45","pages":"18161–18169 18161–18169"},"PeriodicalIF":6.7,"publicationDate":"2024-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142609626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-31DOI: 10.1021/acs.analchem.4c0483310.1021/acs.analchem.4c04833
Ben Niu*, Benjamin Lee, Wen Chen, Cristian Alberto, Karen Betancourt Moreira, Philip Compton, Kristoff Homan, Jason Pinckney, Yaxing Zhu, Michelle Vendel, Karl Wetterhorn, Shana Walrond, Esrath Santha, Amanda Horowitz, Nicole Zaubi and Jeffrey Johnson,
Bispecific antibodies (bsAbs) and multispecific antibodies (msAbs) represent a promising frontier in therapeutic antibody development, offering unique capabilities not achievable with traditional monoclonal antibodies. Despite their potential, significant challenges remain due to their increased molecular complexity. One prominent challenge is the correct assembly of light and heavy chains, as improper pairing leads to mispaired or incompletely assembled species that lack therapeutic efficacy and possess undesired properties, impairing the developability, manufacturability, and safety. There is a critical need for rapid, sensitive analytical tools to monitor and control these undesired species and ensure the quality assessment of bsAbs and msAbs. To address this need, we present a novel high-throughput, format-agnostic intact mass workflow that significantly enhances the efficiency of detecting and quantifying biotherapeutic products and related impurities. This workflow integrates automated sample preparation, novel high-resolution rapid mass detection powered by SampleStream-MS, and an advanced data analysis pipeline. It offers increased throughput and data quality while substantially reducing analysis turnover time and labor. This was demonstrated in a pilot program where ∼800 multispecific antibodies were processed in 10 working days. The article details the evaluation and validation of our method, demonstrating its repeatability and intermediate precision in terms of measurement accuracy and relative quantification of various product-related species. We underscore the transformative potential of this end-to-end high-throughput workflow in expediting bispecific and multispecific antibody discovery, optimizing production processes, and ensuring high-quality development and manufacturing for therapeutic antibodies.
{"title":"End-To-End Automated Intact Protein Mass Spectrometry for High-Throughput Screening and Characterization of Bispecific and Multispecific Antibodies","authors":"Ben Niu*, Benjamin Lee, Wen Chen, Cristian Alberto, Karen Betancourt Moreira, Philip Compton, Kristoff Homan, Jason Pinckney, Yaxing Zhu, Michelle Vendel, Karl Wetterhorn, Shana Walrond, Esrath Santha, Amanda Horowitz, Nicole Zaubi and Jeffrey Johnson, ","doi":"10.1021/acs.analchem.4c0483310.1021/acs.analchem.4c04833","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c04833https://doi.org/10.1021/acs.analchem.4c04833","url":null,"abstract":"<p >Bispecific antibodies (bsAbs) and multispecific antibodies (msAbs) represent a promising frontier in therapeutic antibody development, offering unique capabilities not achievable with traditional monoclonal antibodies. Despite their potential, significant challenges remain due to their increased molecular complexity. One prominent challenge is the correct assembly of light and heavy chains, as improper pairing leads to mispaired or incompletely assembled species that lack therapeutic efficacy and possess undesired properties, impairing the developability, manufacturability, and safety. There is a critical need for rapid, sensitive analytical tools to monitor and control these undesired species and ensure the quality assessment of bsAbs and msAbs. To address this need, we present a novel high-throughput, format-agnostic intact mass workflow that significantly enhances the efficiency of detecting and quantifying biotherapeutic products and related impurities. This workflow integrates automated sample preparation, novel high-resolution rapid mass detection powered by SampleStream-MS, and an advanced data analysis pipeline. It offers increased throughput and data quality while substantially reducing analysis turnover time and labor. This was demonstrated in a pilot program where ∼800 multispecific antibodies were processed in 10 working days. The article details the evaluation and validation of our method, demonstrating its repeatability and intermediate precision in terms of measurement accuracy and relative quantification of various product-related species. We underscore the transformative potential of this end-to-end high-throughput workflow in expediting bispecific and multispecific antibody discovery, optimizing production processes, and ensuring high-quality development and manufacturing for therapeutic antibodies.</p>","PeriodicalId":6,"journal":{"name":"ACS Applied Nano Materials","volume":"96 45","pages":"18287–18300 18287–18300"},"PeriodicalIF":6.7,"publicationDate":"2024-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142609478","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-31DOI: 10.1021/acs.analchem.4c0359410.1021/acs.analchem.4c03594
Waseem Ahmed, Eleanor L. Osborne, Aneesh Vincent Veluthandath and Ganapathy Senthil Murugan*,
Infrared (IR) spectroscopy is a powerful analytical technique used to identify and quantify different components within a sample. However, spectral interference from fluctuating concentrations of water vapor and CO2 in the measurement chamber can significantly impede the extraction of quantitative information. These temporal fluctuations cause absorption variations that interfere with the sample’s spectrum, making accurate analysis challenging. While several techniques to overcome this problem exist in the literature, many are time-consuming or ineffective. We present a simple method utilizing just two sample spectra taken sequentially. The difference of these spectra, multiplied by a scaling factor, determined by minimization of the point-to-point spectral length, provides a correction spectrum. Subtracting this from the spectrum to be corrected results in a fully corrected spectrum. We demonstrate the effectiveness of this method via the improved ability to determine analyte concentration from corrected spectra over uncorrected spectra using a partial least square regression (PLSR) model. This technique therefore offers rapid, effective, and automated spectral correction, which is ideal for a nonexpert user in a clinical or industrial setting.
{"title":"A Rapid and Simplified Approach to Correct Atmospheric Absorptions in Infrared Spectra","authors":"Waseem Ahmed, Eleanor L. Osborne, Aneesh Vincent Veluthandath and Ganapathy Senthil Murugan*, ","doi":"10.1021/acs.analchem.4c0359410.1021/acs.analchem.4c03594","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c03594https://doi.org/10.1021/acs.analchem.4c03594","url":null,"abstract":"<p >Infrared (IR) spectroscopy is a powerful analytical technique used to identify and quantify different components within a sample. However, spectral interference from fluctuating concentrations of water vapor and CO<sub>2</sub> in the measurement chamber can significantly impede the extraction of quantitative information. These temporal fluctuations cause absorption variations that interfere with the sample’s spectrum, making accurate analysis challenging. While several techniques to overcome this problem exist in the literature, many are time-consuming or ineffective. We present a simple method utilizing just two sample spectra taken sequentially. The difference of these spectra, multiplied by a scaling factor, determined by minimization of the point-to-point spectral length, provides a correction spectrum. Subtracting this from the spectrum to be corrected results in a fully corrected spectrum. We demonstrate the effectiveness of this method via the improved ability to determine analyte concentration from corrected spectra over uncorrected spectra using a partial least square regression (PLSR) model. This technique therefore offers rapid, effective, and automated spectral correction, which is ideal for a nonexpert user in a clinical or industrial setting.</p>","PeriodicalId":6,"journal":{"name":"ACS Applied Nano Materials","volume":"96 45","pages":"18052–18060 18052–18060"},"PeriodicalIF":6.7,"publicationDate":"2024-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acs.analchem.4c03594","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142609542","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-31DOI: 10.1021/acs.analchem.4c0459410.1021/acs.analchem.4c04594
Li Fu, Pengjie Dong, Zerui Liu, Qi Li and Yingshu Guo*,
Screening a novel electrochemiluminescence (ECL) system and lowering the ECL triggering potential are essential to ECL evolution. Herein, the near-infrared (NIR) ECL system with low-triggering potential ECL was constructed with weakly reductive tert-butylamine borane as coreactant and mercaptosuccinic acid/citrate (MSA/Cit)-capped Au (MSA/Cit@AuNCs) as luminophores. Toxic-element-free and dual-ligand MSA/Cit@AuNCs were prepared via ligand exchange and utilized as a model for developing unary metal NCs-based luminophores with more enhanced ECL performance than monoligand Au nanocrystals (AuNCs), which exhibited a two hole-injected process at around 0.48 and 0.80 V, respectively. Beneficial to the intrinsic low hole-injected potential of AuNCs, MSA/Cit@AuNCs exhibited similar low-triggering ECL potential at around 0.57 V with the participation of series coreactants or not, originating from the recombination of an internal prestored electron within the conduction band (CB) and electroinjected holes at around 0.25 V. Furthermore, the enhanced low-triggering potential around 0.57 V and NIR ECL around 835 nm of MSA/Cit@AuNCs was eventually obtained with the reductive tert-butylamine borane or N2H4·H2O containing a −C–N single-bond structure merely as coreactant. The low-triggering potential ECL of MSA/Cit@AuNCs/tert-butylamine borane system at 0.57 V can be harnessed to selectively determine a carcinoembryonic antigen (CEA) with one linear range spanning from 2 to 20000 fg/mL and a limit of detection of 0.33 fg/mL (S/N = 3). This study will contribute to a more comprehensive understanding of the ECL mechanism in terms of both regulating NCs and selecting coreactants.
筛选新型电化学发光(ECL)系统和降低 ECL 触发电位对 ECL 演化至关重要。本文以弱还原性叔丁胺硼烷为核心反应物,以巯基丁二酸/柠檬酸(MSA/Cit)封端金(MSA/Cit@AuNCs)为发光体,构建了低触发电位的近红外(NIR)电化学发光(ECL)系统。通过配体交换制备了无毒元素和双配体 MSA/Cit@AuNCs,并以此为模型开发了基于单元金属 NCs 的发光体,其 ECL 性能比单配体 Au 纳米晶 (AuNCs) 更强,单配体 Au 纳米晶 (AuNCs) 在 0.48 和 0.80 V 左右的电压下分别表现出两个空穴注入过程。得益于 AuNCs 固有的低空穴注入电势,MSA/Cit@AuNCs 在 0.57 V 左右显示出类似的低触发 ECL 电势,无论是否有串联核心反应物参与,这都源于内部预存电子在导带(CB)内与电注入空穴在 0.25 V 左右发生的重组。此外,仅以含有 -C-N 单键结构的还原性叔丁基胺硼烷或 N2H4-H2O 作为核反应物,MSA/Cit@AuNCs 的 0.57 V 左右的低触发电位和 835 nm 左右的近红外 ECL 最终得到了增强。MSA/Cit@AuNCs/tert-butylamine borane 系统在 0.57 V 的低触发电位 ECL 可用于选择性测定癌胚抗原(CEA),其线性范围为 2 到 20000 fg/mL,检测限为 0.33 fg/mL(信噪比为 3)。这项研究将有助于更全面地了解 ECL 在调节 NC 和选择核心反应物方面的机制。
{"title":"Unary Au Nanocrystal with Prestored Electrons and Intrinsic Low Hole-Injected Potential for Low-Triggering Potential Electrochemiluminescence","authors":"Li Fu, Pengjie Dong, Zerui Liu, Qi Li and Yingshu Guo*, ","doi":"10.1021/acs.analchem.4c0459410.1021/acs.analchem.4c04594","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c04594https://doi.org/10.1021/acs.analchem.4c04594","url":null,"abstract":"<p >Screening a novel electrochemiluminescence (ECL) system and lowering the ECL triggering potential are essential to ECL evolution. Herein, the near-infrared (NIR) ECL system with low-triggering potential ECL was constructed with weakly reductive <i>tert</i>-butylamine borane as coreactant and mercaptosuccinic acid/citrate (MSA/Cit)-capped Au (MSA/Cit@AuNCs) as luminophores. Toxic-element-free and dual-ligand MSA/Cit@AuNCs were prepared via ligand exchange and utilized as a model for developing unary metal NCs-based luminophores with more enhanced ECL performance than monoligand Au nanocrystals (AuNCs), which exhibited a two hole-injected process at around 0.48 and 0.80 V, respectively. Beneficial to the intrinsic low hole-injected potential of AuNCs, MSA/Cit@AuNCs exhibited similar low-triggering ECL potential at around 0.57 V with the participation of series coreactants or not, originating from the recombination of an internal prestored electron within the conduction band (CB) and electroinjected holes at around 0.25 V. Furthermore, the enhanced low-triggering potential around 0.57 V and NIR ECL around 835 nm of MSA/Cit@AuNCs was eventually obtained with the reductive <i>tert</i>-butylamine borane or N<sub>2</sub>H<sub>4</sub>·H<sub>2</sub>O containing a −C–N single-bond structure merely as coreactant. The low-triggering potential ECL of MSA/Cit@AuNCs/<i>tert</i>-butylamine borane system at 0.57 V can be harnessed to selectively determine a carcinoembryonic antigen (CEA) with one linear range spanning from 2 to 20000 fg/mL and a limit of detection of 0.33 fg/mL (S/N = 3). This study will contribute to a more comprehensive understanding of the ECL mechanism in terms of both regulating NCs and selecting coreactants.</p>","PeriodicalId":6,"journal":{"name":"ACS Applied Nano Materials","volume":"96 45","pages":"18254–18261 18254–18261"},"PeriodicalIF":6.7,"publicationDate":"2024-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142609724","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-31DOI: 10.1021/acs.analchem.4c0177810.1021/acs.analchem.4c01778
Shawninder Chahal, Lei Tian, Shaghig Bilamjian, Ferenc Balogh, Lorna De Leoz, Tarun Anumol, Daniel Cuthbertson and Stéphane Bayen*,
Bees produce honey through the collection and transformation of nectar, whose botanical origin impacts the taste, nutritional value, and, therefore, the market price of the resulting honey. This phenomenon has led some to mislabel their honey so that it can be sold at a higher price. Metabolomics has been gaining popularity in food authentication, but rapid data mining algorithms are needed to facilitate the discovery of new authenticity markers. A nontargeted high-resolution liquid chromatography–mass spectrometry (HR/LC–MS) analysis of 262 monofloral honey samples, of which 50 were blueberry honey, was performed. Data mining methods were demonstrated for the discovery of binary single-markers (compound was only detected in blueberry honey), threshold single-markers (compound had the highest concentration in blueberry honey), and interval ratio-markers (the ratio of two compounds was within a unique interval in blueberry honey). A novel convolutional algorithm was developed for the discovery of interval ratio-markers, which trained 14× faster and achieved a 0.2 Matthews correlation coefficient (MCC) units higher classification score than existing open-source implementations. The convolutional algorithm also had classification performance similar to that of a brute-force search but trained 1521× faster. A pipeline for shortlisting candidate authenticity markers from the LC-MS spectra that may be suitable for chemical structure identification was also demonstrated and led to the identification of niacin as a blueberry honey threshold single-marker. This work demonstrates an end-to-end approach to mine the honey metabolome for novel authenticity markers and can readily be applied to other types of food and analytical chemistry instruments.
{"title":"Rapid Convolutional Algorithm for the Discovery of Blueberry Honey Authenticity Markers via Nontargeted LC-MS Analysis","authors":"Shawninder Chahal, Lei Tian, Shaghig Bilamjian, Ferenc Balogh, Lorna De Leoz, Tarun Anumol, Daniel Cuthbertson and Stéphane Bayen*, ","doi":"10.1021/acs.analchem.4c0177810.1021/acs.analchem.4c01778","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c01778https://doi.org/10.1021/acs.analchem.4c01778","url":null,"abstract":"<p >Bees produce honey through the collection and transformation of nectar, whose botanical origin impacts the taste, nutritional value, and, therefore, the market price of the resulting honey. This phenomenon has led some to mislabel their honey so that it can be sold at a higher price. Metabolomics has been gaining popularity in food authentication, but rapid data mining algorithms are needed to facilitate the discovery of new authenticity markers. A nontargeted high-resolution liquid chromatography–mass spectrometry (HR/LC–MS) analysis of 262 monofloral honey samples, of which 50 were blueberry honey, was performed. Data mining methods were demonstrated for the discovery of binary single-markers (compound was only detected in blueberry honey), threshold single-markers (compound had the highest concentration in blueberry honey), and interval ratio-markers (the ratio of two compounds was within a unique interval in blueberry honey). A novel convolutional algorithm was developed for the discovery of interval ratio-markers, which trained 14× faster and achieved a 0.2 Matthews correlation coefficient (MCC) units higher classification score than existing open-source implementations. The convolutional algorithm also had classification performance similar to that of a brute-force search but trained 1521× faster. A pipeline for shortlisting candidate authenticity markers from the LC-MS spectra that may be suitable for chemical structure identification was also demonstrated and led to the identification of niacin as a blueberry honey threshold single-marker. This work demonstrates an end-to-end approach to mine the honey metabolome for novel authenticity markers and can readily be applied to other types of food and analytical chemistry instruments.</p>","PeriodicalId":6,"journal":{"name":"ACS Applied Nano Materials","volume":"96 45","pages":"17922–17930 17922–17930"},"PeriodicalIF":6.7,"publicationDate":"2024-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142609551","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-31DOI: 10.1021/acs.analchem.4c0220410.1021/acs.analchem.4c02204
Weihong Yin, Kai Hu, Yunxing Yang, Jianjian Zhuang, Zheyu Zou, Yuanjie Suo, Liping Xia, Jiale Li, Yehong Gui, Haohua Mei, Juxin Yin, Tao Zhang* and Ying Mu*,
Escherichia coli O157:H7 (E. coli O157:H7) is a prominent pathogenic bacterium that poses serious risks to food safety and public health. Rapid and accurate detection of live E. coli O157:H7 is of great importance in food quality monitoring and clinical diagnosis. Here, we report a propidium monoazide-assisted nonamplification digital CRISPR/Cas12a assay for sensitive and rapid detection of live E. coli O157:H7. The incorporation of propidium monoazide into the method enables the selective detection of live bacteria by eliminating 98% of interference from the dead bacterial nucleic acid. Implemented on microfluidic digital chips, this method can achieve absolute quantification of nonamplified nucleic acid. The entire detection process of live bacteria can be completed within 120 min without the need for establishing a standard curve, and the sensitivity of the method reaches 1.2 × 103 CFU/mL. The method was validated using various samples, yielding results consistent with the plate counting method (Pearson’s r = 0.9490). Consequently, this method holds significant potential for applications in fields requiring live bacterial detection.
{"title":"A Propidium Monoazide-Assisted Digital CRISPR/Cas12a Assay for Selective Detection of Live Bacteria in Sample","authors":"Weihong Yin, Kai Hu, Yunxing Yang, Jianjian Zhuang, Zheyu Zou, Yuanjie Suo, Liping Xia, Jiale Li, Yehong Gui, Haohua Mei, Juxin Yin, Tao Zhang* and Ying Mu*, ","doi":"10.1021/acs.analchem.4c0220410.1021/acs.analchem.4c02204","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c02204https://doi.org/10.1021/acs.analchem.4c02204","url":null,"abstract":"<p ><i>Escherichia coli</i> O157:H7 (<i>E. coli</i> O157:H7) is a prominent pathogenic bacterium that poses serious risks to food safety and public health. Rapid and accurate detection of live <i>E. coli</i> O157:H7 is of great importance in food quality monitoring and clinical diagnosis. Here, we report a propidium monoazide-assisted nonamplification digital CRISPR/Cas12a assay for sensitive and rapid detection of live <i>E. coli</i> O157:H7. The incorporation of propidium monoazide into the method enables the selective detection of live bacteria by eliminating 98% of interference from the dead bacterial nucleic acid. Implemented on microfluidic digital chips, this method can achieve absolute quantification of nonamplified nucleic acid. The entire detection process of live bacteria can be completed within 120 min without the need for establishing a standard curve, and the sensitivity of the method reaches 1.2 × 10<sup>3</sup> CFU/mL. The method was validated using various samples, yielding results consistent with the plate counting method (Pearson’s <i>r</i> = 0.9490). Consequently, this method holds significant potential for applications in fields requiring live bacterial detection.</p>","PeriodicalId":6,"journal":{"name":"ACS Applied Nano Materials","volume":"96 45","pages":"17941–17949 17941–17949"},"PeriodicalIF":6.7,"publicationDate":"2024-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142609474","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-31DOI: 10.1021/acs.analchem.4c0298610.1021/acs.analchem.4c02986
Zhuoxin Ye, Mo Ma, Yuxuan Chen, Jukun Yang, Chen Zhao, Quanping Diao, Pinyi Ma* and Daqian Song*,
Triple-negative breast cancer (TNBC) is the most aggressive subtype of breast cancer (BC). Thus, early detection and accurate diagnosis of this cancer are crucial for improving the survival rate of patients. Specific microRNAs (miRNAs) have been implicated in the occurrence, proliferation, and metastasis of TNBC. Addressing this need, our study developed a biosensor platform for early and accurate TNBC diagnosis by integrating electrochemiluminescence (ECL) technology with a DNA sensing strategy. Specifically, synthesized positively charged carbon dots (CDs) were used to neutralize the electrostatic repulsion between DNA strands and facilitate the assembly of DNA triangular prisms (DNA TP-CDs). Hairpins were then incorporated into the DNA TP-CDs to form the final DNA crown structure. The early TNBC biomarker, microRNA-93–3p (miR-93–3p), allowed for the binding between the DNA Crown and the DNA track on the electrode and initiated the ECL signal. Subsequently, microRNA-210 (miR-210) unlocked the DNA tripedal walker, and its movement on the DNA Crown eventually quenched the ECL signal, enabling accurate TNBC diagnosis and tumor stage assessment. Our proposed biosensor had satisfactory sensing efficiency due to the ordered DNA track and rapid-moving DNA walker. The data revealed a good linear relationship between the ECL signals and the logarithm of miRNA concentrations, with miR-93–3p having a detection limit of 31.04 aM and miR-210 having a detection limit of 7.69 aM. The biosensor also showed satisfactory performance in serum samples and cells. Taken together, this study hopes to provide ideas and applications for clinical diagnosis as well as the personalized treatment of TNBC.
三阴性乳腺癌(TNBC)是乳腺癌(BC)中侵袭性最强的亚型。因此,这种癌症的早期发现和准确诊断对于提高患者的生存率至关重要。特定的微RNA(miRNA)与TNBC的发生、增殖和转移有关。针对这一需求,我们的研究开发了一种生物传感器平台,通过将电化学发光(ECL)技术与 DNA 传感策略相结合,用于 TNBC 的早期准确诊断。具体来说,合成的带正电荷的碳点(CD)被用来中和 DNA 链之间的静电排斥力,促进 DNA 三角棱柱(DNA TP-CD)的组装。然后将发夹并入 DNA TP-CD,形成最终的 DNA 冠状结构。早期 TNBC 生物标记物 microRNA-93-3p (miR-93-3p)可使 DNA 冠状结构与电极上的 DNA 轨道结合,并启动 ECL 信号。随后,microRNA-210(miR-210)解锁了DNA三足行走器,其在DNA冠上的运动最终熄灭了ECL信号,从而实现了对TNBC的准确诊断和肿瘤分期评估。我们提出的生物传感器具有有序的DNA轨迹和快速移动的DNA行走器,因此具有令人满意的传感效率。数据显示,ECL 信号与 miRNA 浓度的对数之间存在良好的线性关系,miR-93-3p 的检测限为 31.04 aM,miR-210 的检测限为 7.69 aM。该生物传感器在血清样本和细胞中也表现出令人满意的性能。综上所述,这项研究希望能为 TNBC 的临床诊断和个性化治疗提供思路和应用。
{"title":"Early Diagnosis of Triple-Negative Breast Cancer Based on Dual microRNA Detection Using a Well-Defined DNA Crown-Carbon Dots Structure as an Electrochemiluminescence Sensing Platform","authors":"Zhuoxin Ye, Mo Ma, Yuxuan Chen, Jukun Yang, Chen Zhao, Quanping Diao, Pinyi Ma* and Daqian Song*, ","doi":"10.1021/acs.analchem.4c0298610.1021/acs.analchem.4c02986","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c02986https://doi.org/10.1021/acs.analchem.4c02986","url":null,"abstract":"<p >Triple-negative breast cancer (TNBC) is the most aggressive subtype of breast cancer (BC). Thus, early detection and accurate diagnosis of this cancer are crucial for improving the survival rate of patients. Specific microRNAs (miRNAs) have been implicated in the occurrence, proliferation, and metastasis of TNBC. Addressing this need, our study developed a biosensor platform for early and accurate TNBC diagnosis by integrating electrochemiluminescence (ECL) technology with a DNA sensing strategy. Specifically, synthesized positively charged carbon dots (CDs) were used to neutralize the electrostatic repulsion between DNA strands and facilitate the assembly of DNA triangular prisms (DNA TP-CDs). Hairpins were then incorporated into the DNA TP-CDs to form the final DNA crown structure. The early TNBC biomarker, microRNA-93–3p (miR-93–3p), allowed for the binding between the DNA Crown and the DNA track on the electrode and initiated the ECL signal. Subsequently, microRNA-210 (miR-210) unlocked the DNA tripedal walker, and its movement on the DNA Crown eventually quenched the ECL signal, enabling accurate TNBC diagnosis and tumor stage assessment. Our proposed biosensor had satisfactory sensing efficiency due to the ordered DNA track and rapid-moving DNA walker. The data revealed a good linear relationship between the ECL signals and the logarithm of miRNA concentrations, with miR-93–3p having a detection limit of 31.04 aM and miR-210 having a detection limit of 7.69 aM. The biosensor also showed satisfactory performance in serum samples and cells. Taken together, this study hopes to provide ideas and applications for clinical diagnosis as well as the personalized treatment of TNBC.</p>","PeriodicalId":6,"journal":{"name":"ACS Applied Nano Materials","volume":"96 45","pages":"17984–17992 17984–17992"},"PeriodicalIF":6.7,"publicationDate":"2024-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142609477","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-30DOI: 10.1021/acs.analchem.4c0393410.1021/acs.analchem.4c03934
Hui He, Yuchen Wu, Mingjian Chen, Lanlin Qi, Xiaoxiao He* and Kemin Wang*,
Allostery is a phenomenon where the binding of a ligand at one allosteric site influences the affinity for another ligand at an active site. Different from orthosteric regulation, it allows for more precise control of biomolecular activity and enhances the stability of the molecules. Inspired by allosteric regulation of natural molecules, we present a Y-shaped allosteric DNA nanodevice, termed YssAP, that was pH-responsive and functionalized with the AS1411 aptamer for accurate fluorescence imaging of human apurinic/apyrimidinic endonuclease (APE1) activity in tumor cells. With rational design, YssAP could not be cut by APE1, and Cy5 was in the proximity of BHQ2, leading to suppressed signal emission. In contrast, since acidic pH acted as an allosteric effector, YssAP underwent a conformational change into an activated DNA probe (YdsAP) at acidic extracellular pH. After entering the tumor cell via the specific recognition of AS1411 aptamer, the overexpressed APE1 in the tumor cell cut the AP site on YdsAP. Cy5 moved far away from BHQ2, resulting in a strong signal output. Compared with the direct construction of the APE1 substrate, allosteric DNA nanodevices have more accurate imaging effects, which can be precisely adjusted by changing the switching state. We anticipate that this strategy will be applied in the screening of APE1 inhibitors and precise tumor diagnosis.
异构现象是指配体在一个异构位点的结合会影响另一个配体在活性位点的亲和力。与正交调节不同,异位调节可以更精确地控制生物分子的活性,并提高分子的稳定性。受天然分子异位调控的启发,我们提出了一种 Y 形异位 DNA 纳米器件,称为 YssAP,它具有 pH 响应性,并与 AS1411 aptamer 功能化,可用于对肿瘤细胞中人类嘌呤/近嘧啶内切酶(APE1)的活性进行精确的荧光成像。通过合理设计,YssAP 不能被 APE1 切断,Cy5 靠近 BHQ2,导致信号发射受抑制。相反,由于酸性 pH 是一种异构效应因子,YssAP 在酸性细胞外 pH 下会发生构象变化,变成活化的 DNA 探针(YdsAP)。通过 AS1411 aptamer 的特异性识别进入肿瘤细胞后,肿瘤细胞中过表达的 APE1 切断了 YdsAP 上的 AP 位点。Cy5远离BHQ2,从而产生强烈的信号输出。与直接构建 APE1 底物相比,异构 DNA 纳米器件具有更精确的成像效果,可通过改变开关状态进行精确调节。我们期待这一策略能应用于 APE1 抑制剂的筛选和肿瘤的精确诊断。
{"title":"Acidic Extracellular pH-Activated Allosteric DNA Nanodevice for Fluorescence Imaging of APE1 Activity in Tumor Cells","authors":"Hui He, Yuchen Wu, Mingjian Chen, Lanlin Qi, Xiaoxiao He* and Kemin Wang*, ","doi":"10.1021/acs.analchem.4c0393410.1021/acs.analchem.4c03934","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c03934https://doi.org/10.1021/acs.analchem.4c03934","url":null,"abstract":"<p >Allostery is a phenomenon where the binding of a ligand at one allosteric site influences the affinity for another ligand at an active site. Different from orthosteric regulation, it allows for more precise control of biomolecular activity and enhances the stability of the molecules. Inspired by allosteric regulation of natural molecules, we present a Y-shaped allosteric DNA nanodevice, termed YssAP, that was pH-responsive and functionalized with the AS1411 aptamer for accurate fluorescence imaging of human apurinic/apyrimidinic endonuclease (APE1) activity in tumor cells. With rational design, YssAP could not be cut by APE1, and Cy5 was in the proximity of BHQ2, leading to suppressed signal emission. In contrast, since acidic pH acted as an allosteric effector, YssAP underwent a conformational change into an activated DNA probe (YdsAP) at acidic extracellular pH. After entering the tumor cell via the specific recognition of AS1411 aptamer, the overexpressed APE1 in the tumor cell cut the AP site on YdsAP. Cy5 moved far away from BHQ2, resulting in a strong signal output. Compared with the direct construction of the APE1 substrate, allosteric DNA nanodevices have more accurate imaging effects, which can be precisely adjusted by changing the switching state. We anticipate that this strategy will be applied in the screening of APE1 inhibitors and precise tumor diagnosis.</p>","PeriodicalId":6,"journal":{"name":"ACS Applied Nano Materials","volume":"96 45","pages":"18079–18085 18079–18085"},"PeriodicalIF":6.7,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142609398","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-30DOI: 10.1021/acs.analchem.4c0351110.1021/acs.analchem.4c03511
Mukunthan Ramasamy, and , Ji Won Ha*,
Chemical interface damping (CID) is a newly proposed plasmon damping pathway based on interfacial hot-electron transfer from metal to adsorbate molecules. However, achieving in situ tunability of CID in single gold nanorods (AuNRs) remains a considerable challenge. Here, we present the CID effect induced by benzene 1,2-dithiol (BDT) molecule adsorption on single AuNRs and the effective electrochemical tunability of CID in BDT-adsorbed AuNRs immobilized on an indium tin oxide (ITO) surface. Manipulations of the electrochemical potential alter the electron density of AuNRs, thereby influencing and tuning the localized surface plasmon resonance (LSPR) spectrum, with cathodic potential blueshifting and anodic potential redshifting. The strong adsorption of BDT on Au induced CID in single AuNRs. The potential-induced LSPR scattering spectra of BDT-adsorbed AuNRs for linear potential sweep showed a stable LSPR spectral response, irrespective of the concentrations of BDT molecules. Due to the involvement of two Au–S bonds, BDT molecules have a higher free adsorption energy and a lower desorption rate on the Au surface. This resulted in a stable LSPR spectral response for a linear electrochemical potential sweep. Furthermore, a constant anodic and cathodic potential application showed the tunability of the CID at the BDT-Au interface.
{"title":"Single-Particle Spectroelectrochemistry: Revealing the Electrochemical Tuning Mechanism of Chemical Interface Damping in 1,2-Benzenedithiol-Adsorbed Single Gold Nanorods","authors":"Mukunthan Ramasamy, and , Ji Won Ha*, ","doi":"10.1021/acs.analchem.4c0351110.1021/acs.analchem.4c03511","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c03511https://doi.org/10.1021/acs.analchem.4c03511","url":null,"abstract":"<p >Chemical interface damping (CID) is a newly proposed plasmon damping pathway based on interfacial hot-electron transfer from metal to adsorbate molecules. However, achieving <i>in situ</i> tunability of CID in single gold nanorods (AuNRs) remains a considerable challenge. Here, we present the CID effect induced by benzene 1,2-dithiol (BDT) molecule adsorption on single AuNRs and the effective electrochemical tunability of CID in BDT-adsorbed AuNRs immobilized on an indium tin oxide (ITO) surface. Manipulations of the electrochemical potential alter the electron density of AuNRs, thereby influencing and tuning the localized surface plasmon resonance (LSPR) spectrum, with cathodic potential blueshifting and anodic potential redshifting. The strong adsorption of BDT on Au induced CID in single AuNRs. The potential-induced LSPR scattering spectra of BDT-adsorbed AuNRs for linear potential sweep showed a stable LSPR spectral response, irrespective of the concentrations of BDT molecules. Due to the involvement of two Au–S bonds, BDT molecules have a higher free adsorption energy and a lower desorption rate on the Au surface. This resulted in a stable LSPR spectral response for a linear electrochemical potential sweep. Furthermore, a constant anodic and cathodic potential application showed the tunability of the CID at the BDT-Au interface.</p>","PeriodicalId":6,"journal":{"name":"ACS Applied Nano Materials","volume":"96 45","pages":"18043–18051 18043–18051"},"PeriodicalIF":6.7,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142609533","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-30DOI: 10.1021/acs.analchem.4c0418710.1021/acs.analchem.4c04187
Yuting Sun, Qingyu Hu, Jiali Zuo, He Wang, Zhendong Guo, Yulan Wang* and Huiru Tang*,
Many chiral carboxylic acids with α-amino, α-hydroxyl, and α-methyl groups are concurrently present in mammals establishing unique molecular phenotypes and multiple biological functions, especially host-microbiota symbiotic interactions. Their chirality-resolved simultaneous quantification is essential to reveal the biochemical details of physiology and pathophysiology, though challenging with their low abundances in some biological matrices and difficulty in enantiomer resolution. Here, we developed a method of the chirality-resolved metabolomics with sensitivity-enhanced quantitation via probe-promotion (Met-SeqPro) for analyzing these chiral carboxylic acids. We designed and synthesized a hydrazide-based novel chiral probe, (S)-benzoyl-proline-hydrazide (SBPH), to convert carboxylic acids into amide diastereomers to enhance their retention and chiral resolution on common C18 columns. Using the d5-SBPH-labeled enantiomers as internal standards, we then developed an optimized ultrahigh-performance liquid chromatography with tandem mass spectrometry (UHPLC-MS/MS) method for simultaneous quantification of 60 enantiomers of 30 chiral carboxylic acids in one run. This enantiomer-resolved method showed excellent sensitivity (LOD < 4 fmol-on-column), linearity (R2 > 0.992), precision (CV < 15%), accuracy (|RE| < 20%), and recovery (80−120%) in multiple biological matrices. With the method, we then quantified 60 chiral carboxylic acids in human urine, plasma, feces, and A549 cells to define their metabolomic phenotypes. This provides basic data for human phenomics and a promising tool for investigating the mammal-microbiome symbiotic interactions.
{"title":"Simultaneous Quantification of Carboxylate Enantiomers in Multiple Human Matrices with the Hydrazide-Assisted Ultrahigh-Performance Liquid Chromatography Coupled with Tandem Mass Spectrometry","authors":"Yuting Sun, Qingyu Hu, Jiali Zuo, He Wang, Zhendong Guo, Yulan Wang* and Huiru Tang*, ","doi":"10.1021/acs.analchem.4c0418710.1021/acs.analchem.4c04187","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c04187https://doi.org/10.1021/acs.analchem.4c04187","url":null,"abstract":"<p >Many chiral carboxylic acids with α-amino, α-hydroxyl, and α-methyl groups are concurrently present in mammals establishing unique molecular phenotypes and multiple biological functions, especially host-microbiota symbiotic interactions. Their chirality-resolved simultaneous quantification is essential to reveal the biochemical details of physiology and pathophysiology, though challenging with their low abundances in some biological matrices and difficulty in enantiomer resolution. Here, we developed a method of the chirality-resolved metabolomics with sensitivity-enhanced quantitation via probe-promotion (Met-SeqPro) for analyzing these chiral carboxylic acids. We designed and synthesized a hydrazide-based novel chiral probe, (<i>S</i>)-benzoyl-proline-hydrazide (<i>S</i>BPH), to convert carboxylic acids into amide diastereomers to enhance their retention and chiral resolution on common C<sub>18</sub> columns. Using the <i>d</i><sub>5</sub>-<i>S</i>BPH-labeled enantiomers as internal standards, we then developed an optimized ultrahigh-performance liquid chromatography with tandem mass spectrometry (UHPLC-MS/MS) method for simultaneous quantification of 60 enantiomers of 30 chiral carboxylic acids in one run. This enantiomer-resolved method showed excellent sensitivity (LOD < 4 fmol-on-column), linearity (<i>R</i><sup>2</sup> > 0.992), precision (CV < 15%), accuracy (|RE| < 20%), and recovery (80−120%) in multiple biological matrices. With the method, we then quantified 60 chiral carboxylic acids in human urine, plasma, feces, and A549 cells to define their metabolomic phenotypes. This provides basic data for human phenomics and a promising tool for investigating the mammal-microbiome symbiotic interactions.</p>","PeriodicalId":6,"journal":{"name":"ACS Applied Nano Materials","volume":"96 45","pages":"18141–18149 18141–18149"},"PeriodicalIF":6.7,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142609414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}