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New Magnetic Colloidal Systems Based on Biomimetic Polycomplexes 基于仿生多复合物的新型磁性胶体系统
IF 0.7 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-07-11 DOI: 10.3103/s0027131424700135
I. V. Grigoryan, V. V. Spiridonov, A. M. Adelyanov, Yu. A. Koksharov, K. V. Potapenkov, I. V. Taranov, G. B. Khomutov, A. A. Yaroslavov

Abstract

This paper presents new colloidal systems that have prospects for use as carriers of medicinal compounds and are polymer complexes based on polyacrylic acid molecules of various molecular weights and biogenic polyamine, additionally modified with magnetic iron oxide nanoparticles. The main physicochemical characteristics of the resulting polycomplexes are determined. The possibility of incorporating a doxorubicin medicinal compound in the polycomplexes is demonstrated, and the magnetic properties of the polycomplexes functionalized with magnetic iron oxide nanoparticles are studied.

摘要 本文介绍了有望用作药用化合物载体的新型胶体系统,它们是以不同分子量的聚丙烯酸分子和生物多胺为基础的聚合物复合物,另外还用磁性氧化铁纳米粒子进行了改性。我们确定了由此产生的聚合物复合物的主要理化特性。证明了在聚合体中加入多柔比星药用化合物的可能性,并研究了用磁性氧化铁纳米颗粒功能化的聚合体的磁性。
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引用次数: 0
Biocatalysis in the Degradation of Synthetic Polymers 生物催化降解合成聚合物
IF 0.7 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-04 DOI: 10.3103/s0027131424700019
O. V. Maslova, O. V. Senko, N. A. Stepanov, I. V. Lyagin, E. N. Efremenko

Abstract

Waste from the production and use of synthetic polymers is a serious problem. The development of enzymatic and microbial biocatalysts capable of degrading hard-to-decompose polymers seems to be one of the promising and environmentally oriented solutions to this problem. A possibility of combining biocatalysts (BCs)—enzymes and microbial cells—with metal catalysts is considered as a promising basis for the development of new hybrid chemobiocatalytic processes intended for the effective degradation of synthetic polymers (SPs).

摘要 生产和使用合成聚合物产生的废物是一个严重问题。开发能够降解难以分解的聚合物的酶和微生物生物催化剂似乎是解决这一问题的一种有前途的环保型方法。将生物催化剂(BCs)--酶和微生物细胞--与金属催化剂结合起来的可能性被认为是开发新的混合化学生物催化过程的一个很有前途的基础,旨在有效降解合成聚合物(SPs)。
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引用次数: 0
Protein Engineering of Lactate Oxidase 乳酸氧化酶的蛋白质工程
IF 0.7 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-04 DOI: 10.3103/s0027131424700032
E. D. Belyaeva, N. V. Komarova, A. E. Kuznetsov

Abstract

Lactate oxidase is a practically important enzyme widely used to detect L-lactate in medical diagnostics and in the food industry. This review summarizes the results of protein engineering of lactate oxidases to clarify the underlying mechanism of action of the enzyme and to improve its performance properties.

摘要 乳酸氧化酶是一种重要的实用酶,在医学诊断和食品工业中被广泛用于检测 L-乳酸。本综述总结了乳酸氧化酶蛋白质工程学的研究成果,以阐明该酶的基本作用机制并改善其性能特性。
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引用次数: 0
Strategies of N-Glycosidic Bond Cleavage by DNA Repair Enzymes DNA 修复酶的 N-糖苷键裂解策略
IF 0.7 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-04 DOI: 10.3103/s0027131424700044
A. V. Endutkin, D. O. Zharkov

Abstract

DNA glycosylases are enzymes that hydrolyze the N-glycosidic bond of damaged nucleotides, initiating the process of base excision DNA repair. There are at least eight structural classes of these enzymes, differing in both their substrate specificity and the mechanism of catalysis. The review examines the mechanisms of human and bacterial DNA glycosylases that protect the genome from the major types of DNA damage.

摘要DNA糖基化酶是一种能水解受损核苷酸的N-糖苷键,启动碱基切除DNA修复过程的酶。这类酶至少有八种结构类别,它们在底物特异性和催化机制方面各不相同。本综述探讨了人类和细菌 DNA 糖基化酶的机制,这些酶保护基因组免受主要类型的 DNA 损伤。
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引用次数: 0
Protein Engineering of Bst Polymerase for Isothermal Amplification Purposes 用于等温扩增目的的 Bst 聚合酶蛋白质工程
IF 0.7 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-04 DOI: 10.3103/s002713142470007x
A. S. Cherkashina, O. O. Mikheeva, V. G. Akimkin

Abstract

This paper reviews the protein engineering of Bst polymerase using various methods. To modify the enzyme, approaches such as the production of chimeric proteins, directed evolution, and directed and random mutagenesis are used. Examples of successful changes in enzyme properties such as catalytic activity, processivity, thermal stability, and resistance to inhibitors are described.

摘要 本文综述了利用各种方法对 Bst 聚合酶进行蛋白质工程改造的情况。为了改造酶,采用了生产嵌合蛋白、定向进化、定向和随机诱变等方法。文中介绍了成功改变酶特性的例子,如催化活性、加工性、热稳定性和对抑制剂的抗性。
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引用次数: 0
High Throughput Screening in Drug Discovery: Problems and Solutions 药物发现中的高通量筛选:问题与解决方案
IF 0.7 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-04 DOI: 10.3103/s0027131424700081
D. M. Hushpulian, I. N. Gaisina, S. V. Nikulin, T. A. Chubar, S. S. Savin, I. G. Gazaryan, V. I. Tishkov

Abstract

World-wide introduction of high throughput screening (HTS) methods in drug discovery research did not result in the increased number of novel medications on the market. We discuss novel trends in drug discovery that came from the understanding that majority of diseases are multifactorial and that one enzyme has many protein substrates. Hence, new approaches are focused on development of drugs, which (1) trigger survival pathways to return the organism to homeostatic balance, and (2) inhibit enzymes modifying histones or transcription factors not at the active site, but by displacement of protein substrates from the enzyme complexes. A good example for both approaches comes from the development of activators of antioxidant defense. We analyze and illustrate problems of commonly used in vitro HTS assays, and briefly discuss advantages and limitations of small animal models. The novel approaches are complementary to the standard HTS and do not substitute for testing in mammals. Development of transgenic reporter mice to monitor drug effects by means of in vivo imaging is extremely promising to select proper dosage and administration regimes for full-range PK studies.

摘要 在药物发现研究中全面引入高通量筛选 (HTS) 方法并没有带来市场上新型药物数量的增加。我们讨论了药物发现的新趋势,这种趋势源于这样一种认识,即大多数疾病是多因素的,一种酶有许多蛋白质底物。因此,新方法的重点是开发以下药物:(1) 触发生存途径,使生物体恢复平衡;(2) 抑制改变组蛋白或转录因子的酶,但不是在活性位点,而是通过将蛋白质底物从酶复合物中移除。抗氧化防御激活剂的开发为这两种方法提供了很好的范例。我们分析并说明了常用体外 HTS 检测的问题,并简要讨论了小动物模型的优势和局限性。这些新方法是标准 HTS 的补充,不能取代哺乳动物试验。开发转基因报告小鼠,通过体内成像监测药物效应,对于选择适当的剂量和给药方案进行全方位的 PK 研究极具前景。
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引用次数: 0
Application of MF3 Microbial Recombinant Protein in Refolding of Plant Chitinase MF3 微生物重组蛋白在植物几丁质酶重构中的应用
IF 0.7 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-04 DOI: 10.3103/s0027131424700020
A. M. Rozhkova, Yu. A. Denisenko, I. G. Sinelnikov, I. N. Zorov, D. V. Erokhin, V. G. Dzhavakhia

Abstract

Expression of recombinant proteins is important for studying their biological functions. For the primary description of protein properties, the E. coli expression system is most often used. However, in overexpression conditions, the rate of aggregation of target proteins often exceeds the rate of proper folding, resulting in the formation of insoluble inclusion bodies. Inclusion bodies are a clear disadvantage of the E. coli expression system since they prevent the extraction of target recombinant proteins. The use of chaperone-like proteins in vitro while refolding a target protein is one of the solutions to the existing problem. In this study, the MF3 recombinant protein is an example of a chaperone-like protein, which increases the yield of soluble plant chitinase by 92% compared to the yield of this protein using the standard refolding procedure.

摘要表达重组蛋白对研究其生物功能非常重要。为了初步描述蛋白质的特性,最常用的是大肠杆菌表达系统。然而,在过量表达条件下,目标蛋白质的聚集速度往往超过正常折叠的速度,从而形成不溶性包涵体。包涵体是大肠杆菌表达系统的一个明显缺点,因为它们阻碍了目标重组蛋白的提取。在体外使用类似于伴侣蛋白的蛋白来重新折叠目标蛋白是解决现有问题的方法之一。在本研究中,MF3 重组蛋白就是一个类似伴侣蛋白的例子,它使可溶性植物几丁质酶的产量比使用标准重折叠程序的产量提高了 92%。
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引用次数: 0
Computer Modeling of the Mechanisms of Enzymatic Reactions: Lessons from 20 Years of Practice 酶促反应机理的计算机建模:20 年实践的经验教训
IF 0.7 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-04 DOI: 10.3103/s0027131424700093
M. G. Khrenova, T. I. Mulashkina, A. M. Kulakova, I. V. Polyakov, A. V. Nemukhin

Abstract

The combined quantum mechanics/molecular mechanics method is most often used to describe the molecular mechanisms of enzymatic reactions. The review discusses the main methodological issues, gives practical recommendations, and also illustrates the progress of the method over the past 20 years using an important example of the reaction of guanosine triphosphate hydrolysis by a protein complex.

摘要量子力学/分子力学相结合的方法最常用于描述酶促反应的分子机理。这篇综述讨论了主要的方法学问题,给出了实用建议,并以蛋白质复合物水解三磷酸鸟苷反应这一重要实例说明了该方法在过去 20 年中取得的进展。
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引用次数: 0
Methylation of Coproporphyrin as a Protective Mechanism in Mycobacteria under Adverse Conditions 卟啉的甲基化是分枝杆菌在不利条件下的一种保护机制
IF 0.7 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-04 DOI: 10.3103/s0027131424700068
D. I. Bagaeva, G. R. Demina, M. O. Agaphonov, A. P. Savitsky, A. S. Kaprelyants, M. O. Shleeva

Abstract

The transition of active Mycolicibacterium smegmatis cells to a dormant state under acidification conditions is accompanied by the intracellular accumulation of tetramethyl ester of coproporphyrin (TMC). At the same time, the dormant forms of mycobacteria develop resistance to a number of damaging factors. The addition of 5-aminolevulinic acid (ALA), a precursor of porphyrin synthesis, into the bacterial culture medium leads to the accumulation of TMC in actively growing cells, which simulates the situation with dormant mycobacteria. Upon threefold increasing the concentration of TMC, the bacteria become sevenfold more resistant to the action of 40 mM hydrogen peroxide and 90-fold more resistant to heating up to 80°C. At the same time, in M. smegmatis cells with an increased concentration of TMC, the activity of dichlorophenolindophenol reductase that is a marker of respiratory chain activity decreases by 18%. The detected inhibition of activity can lead to a decrease in side oxidative reactions in the cell. Therefore, the accumulation of methylated coproporphyrin is possibly one of the mechanisms for the development of mycobacterium resistance at dormancy.

摘要 在酸化条件下,活跃的烟曲霉菌(Mycolicibacterium smegmatis)细胞向休眠状态的转变伴随着共卟啉四甲酯(TMC)在细胞内的积累。同时,处于休眠状态的分枝杆菌会对一些破坏性因子产生抗性。在细菌培养基中加入卟啉合成的前体--5-氨基乙酰丙酸(ALA),会导致生长活跃的细胞中 TMC 的积累,这模拟了休眠分枝杆菌的情况。将 TMC 的浓度提高三倍后,细菌对 40 毫摩尔过氧化氢的抗性提高了七倍,对加热至 80°C 的抗性提高了 90 倍。同时,在 TMC 浓度增加的 M. smegmatis 细胞中,作为呼吸链活性标志的二氯苯酚靛酚还原酶的活性降低了 18%。检测到的活性抑制可导致细胞内的副氧化反应减少。因此,甲基化共卟啉的积累可能是分枝杆菌在休眠期产生抗药性的机制之一。
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引用次数: 0
Post-Translational Modifications of the Sulfhydryl Group of the Cysteine Residue of Glyceraldehyde-3-phosphate Dehydrogenase 甘油醛-3-磷酸脱氢酶半胱氨酸残基巯基的翻译后修饰
IF 0.7 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-04 DOI: 10.3103/s0027131424700056
V. I. Muronetz, M. V. Medvedeva, E. V. Schmalhausen

Abstract

The main types of oxidative post-translational modifications of the glycolytic enzyme glyceraldehyde-3-phosphate dehydrogenase (GAPDН) targeting the sulfhydryl group of the catalytic cysteine residue Cys152 are reviewed. The highly reactive sulfhydryl group of Cys152 in the active center of GAPDH undergoes oxidation and S-nitrosylation, leading to inactivation and destabilization of the enzyme. Upon reversible oxidation of the sulfhydryl group to form cysteine-sulfenic acid, the enzyme loses dehydrogenase activity, but gains the ability to catalyze the acyl-phosphatase reaction. Hydrolysis of the product of the dehydrogenase reaction, 1,3-diphosphoglycerate, under the action of oxidized GAPDH leads to uncoupling of oxidation and phosphorylation at this stage of glycolysis. The action of nitric oxide results in S-nitrosylation of Cys152 in GAPDH with the subsequent formation of cysteine-sulfenic acid due to hydrolysis of the S-NO-group. Data are presented on the relationship between S-nitrosylation, oxidation and S-glutathionylation of Cys152 in GAPDH. The role of post-translational modifications of the sulfhydryl group of the catalytic cysteine residue in the regulation of enzyme activity, as well as the mechanisms ensuring the reversibility of such modifications are discussed.

摘要 综述了糖酵解酶甘油醛-3-磷酸脱氢酶(GAPDН)以催化半胱氨酸残基 Cys152 的巯基为目标的主要氧化翻译后修饰类型。GAPDH 活性中心 Cys152 的高活性巯基会发生氧化和 S-亚硝基化,导致酶失活和不稳定。当巯基被可逆氧化形成半胱氨酸-亚磺酸时,酶失去了脱氢酶活性,但获得了催化酰基磷酸酶反应的能力。在氧化 GAPDH 的作用下,脱氢酶反应的产物--1,3-二磷酸甘油酯发生水解,导致糖酵解这一阶段的氧化和磷酸化脱钩。一氧化氮的作用导致 GAPDH 中的 Cys152 发生 S-亚硝基化,随后由于 S-NO-基团的水解而形成半胱氨酸-亚硫酸。本文提供了有关 GAPDH 中 Cys152 的 S-亚硝基化、氧化和 S-谷胱甘肽化之间关系的数据。讨论了催化半胱氨酸残基的巯基翻译后修饰在调节酶活性中的作用,以及确保这种修饰可逆的机制。
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引用次数: 0
期刊
Moscow University Chemistry Bulletin
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