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Overcoming the Protective Barriers of Cells in the Transformation of Bacteria with Exogenous DNA Using the Example of Rhodobacter capsulatus 克服外源DNA转化细菌过程中细胞的保护屏障——以荚膜红杆菌为例
IF 0.8 Q3 Engineering Pub Date : 2023-09-19 DOI: 10.1134/S2635167623700362
E. V. Mayorova, A. I. Romanova, E. P. Petushkova, A. A. Tsygankov

The culturing conditions for the production of cells of the purple nonsulfur bacteria Rba. capsulatus, which possess a minimal capsule, are selected and the effectiveness of their use in induced transformation by electroporation to transfer exogenous DNA in comparison with cells cultivated on other types of conventionally used media is shown. It is found that, upon the electroporation of plasmid DNA (pDNA) into the cells of Rba. capsulatus according to the selected procedure, the survival rate of the culture is an unstable quantity, which requires optimization of the conditions for obtaining electrocompetent cells and careful selection of the electric-shock treatment mode. For the first time, the fundamental possibility of using an approach for protection against the destruction of pDNA by the restriction modification system (RMS) of Rba. capsulatus by means of in vitro methylation with a cell-free extract of this culture, as well as transformation of the treated pDNA into competent cells of this bacterium by electroporation is demonstrated.

紫色无硫细菌Rba细胞的培养条件。选择具有最小胶囊的荚膜,并将其用于电穿孔诱导转化以转移外源DNA的有效性与在其他类型常规使用的培养基上培养的细胞进行比较。发现质粒DNA (pDNA)电穿孔后进入Rba细胞。根据选择的程序,培养物的存活率是一个不稳定的量,这需要优化获得电致能细胞的条件和仔细选择电击处理方式。首次为利用Rba限制性修饰系统(RMS)保护pDNA免受其破坏提供了基本的可能性。通过体外甲基化这种培养的无细胞提取物,以及通过电穿孔将处理过的pDNA转化为这种细菌的能态细胞的方法,证明了荚膜菌。
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引用次数: 0
Biosynthesis of Silver Nanoparticles Using the Shewanella oneidensis MR-1 Strain. Technological Approaches to Increasing the Production and Creating of Preparative Forms of Biogenic Nanomaterial 利用同一希瓦氏菌MR-1菌株生物合成纳米银。增加生物源纳米材料制备形式的生产和创造的技术途径
IF 0.8 Q3 Engineering Pub Date : 2023-09-19 DOI: 10.1134/S263516762370026X
O. A. Zhuravliova, T. A. Voeikova, A. Yu. Vlasova, S. N. Malakhov, T. D. Patsaev, A. L. Vasiliev, N. V. Bulushova, V. G. Debabov

The results of the microbial synthesis of extracellular silver nanoparticles (Ag NPs) in a liquid medium using the metal-reducing Shewanella oneidensis MR-1 strain and silver-nitrate salts are presented. The shape of the Ag NPs is determined by scanning transmission electron microscopy as close to spherical; more than 50% of Ag NPs have dimensions from 10 to 15 nm. The spectra of energy-dispersive X-ray microanalysis show the presence of Ag peaks in all samples of biogenic Ag NPs. The interplanar distances in the crystals of Ag NPs are 2.71 Å. Fourier-transform infrared (IR) spectroscopy confirms the presence of nitrogen-containing organic compounds of protein nature on the surface of the nanomaterial. The values of the hydrodynamic diameter, zeta-potential, and optical parameters of Ag NPs are determined by dynamic light scattering and spectrofluorimetry. It is shown that a large amount of Ag NPs is present on the surface of S. oneidensis MR-1 cells during biosynthesis. A technological approach is proposed to increase the yield of nanomaterial using the ultrasound treatment of cells, followed by the isolation of Ag NPs. It is shown that the compositions of the protein corona in Ag NPs obtained by the standard method and isolated from the cell surface after ultrasound treatment, as well as the size of Ag NPs, have some differences. A technological method for producing powdered preparations of nanomaterial by lyophilization (freeze drying) of aqueous suspensions of Ag NPs and cellular biomass containing Ag NPs is developed. The possibility of restoring preparations in the form of aqueous suspensions without the agglomeration and sedimentation of nanoparticles is shown. A high biocidal activity of all forms of the nanomaterial as antimicrobial agents of a wide spectrum of activity against gram-positive and gram-negative bacteria and microscopic fungi, including yeasts and phytopathogenic mold fungi, is established, which can be used to create polymer nanocomposites of varying nature with antibacterial properties.

本文报道了利用金属还原希瓦氏菌MR-1菌株和硝酸银盐在液体培养基中合成细胞外银纳米颗粒(Ag NPs)的结果。通过扫描透射电子显微镜确定银纳米粒子的形状接近球形;超过50%的银纳米粒子的尺寸在10到15纳米之间。能量色散x射线微分析表明,所有生物源银NPs样品中都存在银峰。Ag NPs晶体的面间距离为2.71 Å。傅里叶变换红外光谱(IR)证实了纳米材料表面存在蛋白质性质的含氮有机化合物。采用动态光散射和荧光光谱法测定了银纳米粒子的水动力直径、ζ电位和光学参数。结果表明,银杏MR-1细胞在生物合成过程中,表面存在大量的Ag NPs。提出了一种利用超声处理细胞,然后分离银纳米粒子来提高纳米材料产量的技术方法。结果表明,标准方法获得的银NPs与超声处理后细胞表面分离的银NPs中蛋白冠的组成以及银NPs的大小存在一定差异。提出了一种利用银纳米粒子和含银纳米粒子的细胞生物质水悬浮液进行冻干制备纳米粒子粉末状制剂的技术方法。以水悬浮液的形式恢复制备的可能性,而没有纳米颗粒的团聚和沉淀。所有形式的纳米材料都具有很高的生物杀灭活性,作为抗革兰氏阳性和革兰氏阴性细菌和微观真菌(包括酵母和植物致病霉菌真菌)的广谱活性抗菌剂,可以用于制造具有不同性质的具有抗菌性能的聚合物纳米复合材料。
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引用次数: 0
Russian Market of Enzyme Preparations and Microorganisms for the Food Industry 俄罗斯食品工业用酶制剂和微生物市场
IF 0.8 Q3 Engineering Pub Date : 2023-09-19 DOI: 10.1134/S2635167623700349
M. A. Staronenkova, T. V. Chikhalina, Z. B. Namsaraev

Industrial enzymes, bacterial and yeast starter cultures are among the most in-demand products of modern genetic technologies and have a crucial role in the food industry. Russia is one of the largest food producers in the world, but at the same time has a very high degree of dependence on imported enzyme and microbial cultures in a number of industries. The work deals with the data of state statistics on the production and import of microbial cultures and enzymes in Russia. The highest share of imported microbial cultures is noted in the segment of bacterial cultures (~400 000 tons per year), primarily in the dairy industry. In the segment of yeast cultures, the share of imports is lower, but in a number of narrower segments, such as the wine industry, it reaches 98% according to expert estimates.

工业酶、细菌和酵母发酵剂是现代遗传技术最受欢迎的产品之一,在食品工业中起着至关重要的作用。俄罗斯是世界上最大的食品生产国之一,但与此同时,在许多工业中,对进口酶和微生物培养物的依赖程度非常高。这项工作涉及俄罗斯微生物培养物和酶的生产和进口的国家统计数据。进口微生物培养物的最高份额是在细菌培养物部分(每年约40万吨),主要用于乳制品行业。在酵母培养物领域,进口份额较低,但在一些较窄的领域,如葡萄酒行业,据专家估计,进口份额达到98%。
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引用次数: 0
Structure of the Microbial Community of the Biological Wastewater Treatment Plant of a Pig Farm and Storage Pond 某养猪场污水生物处理厂及蓄水池微生物群落结构
IF 0.8 Q3 Engineering Pub Date : 2023-09-19 DOI: 10.1134/S2635167623700374
Yu. V. Litti, E. A. Botchkova, D. V. Serdyukov, V. V. Chekashev

A primary study of the quality of wastewater treatment and the composition of the microbial community of the activated sludge of the treatment plant and the storage pond of a pig farm is carried out. Activated sludge is widely represented by nitrogen-cycle microorganisms, including denitrifying and nitrifying bacteria (Nitrosomonas (4%), Nitrospira (8%), as well as, to a lesser extent, anammox microorganisms (Candidatus Kuenenia (0.2%)). Phosphorus is removed by phosphate-accumulating bacteria, primarily Thauera (5%) and Candidatus Accumulibacter (1%). Two-stage aerobic treatment has a very high degree of chemical oxygen demand (97%) and ammonium (99.7%) removal. At the same time, a rather high concentration of nitrates (569 mg/L) and phosphates (75 mg/L) in the treated water probably caused the dramatic development of purple sulfur bacteria of the genus Thiolamprovum in the storage pond, coloring the water a red-burgundy color (“borscht” color). To improve the quality of treatment, reduce energy costs, obtain an energy carrier in the form of biogas, as well as solve the problem of water bloom in the storage pond, a scheme for anaerobic-anoxic-aerobic wastewater treatment of the pig farm is proposed.

对某猪场污水处理质量及处理厂活性污泥和蓄水池微生物群落组成进行了初步研究。活性污泥广泛以氮循环微生物为代表,包括反硝化和硝化细菌(亚硝酸单胞菌(4%),硝化螺旋菌(8%),以及厌氧氨氧化微生物(Candidatus Kuenenia(0.2%))。磷被磷酸盐积累细菌去除,主要是Thauera(5%)和Candidatus Accumulibacter(1%)。两级好氧处理具有很高的化学需氧量(97%)和铵的去除率(99.7%)。同时,处理后的水体中含有高浓度的硝酸盐(569 mg/L)和磷酸盐(75 mg/L),可能导致了贮水池中硫菌属紫色硫菌的急剧繁殖,使水体呈红紫红色(“罗宋汤”色)。为提高处理质量,降低能源成本,获得沼气形式的能量载体,同时解决养猪场贮池水华问题,提出了猪场厌氧-缺氧-好氧废水处理方案。
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引用次数: 0
Effect of Treatment with Colloidal Silver Dispersions Stabilized with Polyhexamethylene Biguanide on the Yield and Biochemical Parameters of Potato Plants in a Field Trial 聚六亚甲基双胍稳定胶体银分散体处理对马铃薯产量和生化指标的影响
IF 0.8 Q3 Engineering Pub Date : 2023-09-19 DOI: 10.1134/S2635167623700246
Yu. A. Krutyakov, A. G. Khina, M. T. Mukhina, O. A. Shapoval, G. V. Lisichkin

A field trial to study the effect of preplant and foliar treatment of potatoes (lat. Solanum tuberosum) of Red Scarlett variety with dispersions of silver nanoparticles stabilized with polyhexamethylene biguanide hydrochloride was conducted. Silver nanoparticles were obtained by chemical reduction and characterized by UV–Vis spectrophotometry, transmission electron microscopy, and dynamic light scattering. The obtained nanoparticles were roughly spherical shape with the average diameter of 4.92 ± 2.66 nm. Preplant treatment of potato tubers and foliar treatment of potato plants were conducted with dispersions of silver nanoparticles with the concentrations of 5 and 0.2 mg/L, respectively. The treatment of potato with the dispersions resulted in an increase in values ​​of morphological indicators such as stem height, tops weight and leaf weight which in turn caused a significant increase in the yield (from 10.6 to 21.9% compared to the control variant) and commercial quality of the tubers. Notably, the maximum increase in the yield was obtained with the largest number of the treatments. In addition, silver dispersions showed a phytoprotective effect on potato plants which manifested in a decrease in damage to leaves by Phytophthora infestans from 30 to 7–8%. An explanation for the observed phytoprotective effect of silver nanoparticles based on the analysis of enzymatic activity in plant leaf tissues was proposed. The obtained results demonstrate high potential of application of drugs based on silver nanoparticles in horticulture as means of stimulating of growth and protection of plants.

通过田间试验研究了马铃薯种前处理和叶面处理的效果。对红思嘉品种龙葵(Solanum tuberosum)进行了用盐酸聚六亚甲基双胍稳定的纳米银分散体研究。采用化学还原法制备了银纳米粒子,并通过紫外可见分光光度法、透射电镜和动态光散射对其进行了表征。得到的纳米颗粒大致为球形,平均直径为4.92±2.66 nm。采用浓度为5 mg/L和0.2 mg/L的纳米银分散体对马铃薯块茎进行植前处理,对马铃薯植株进行叶面处理。马铃薯经分散剂处理后,茎高、顶重、叶重等形态指标显著提高,产量显著提高(比对照提高10.6% ~ 21.9%),块茎商品品质显著提高。值得注意的是,随着处理次数的增加,产量的增加幅度最大。此外,银分散体对马铃薯也有一定的保护作用,可将马铃薯疫霉对叶片的伤害从30%降低到7-8%。基于对植物叶片组织酶活性的分析,对纳米银的植物保护作用进行了解释。研究结果表明,银纳米颗粒药物作为促进植物生长和保护植物的手段在园艺领域具有很大的应用潜力。
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引用次数: 0
Influence of Iron Nanoparticles on the Growth of Seedlings of Some Tree Species 纳米铁对某些树种幼苗生长的影响
IF 0.8 Q3 Engineering Pub Date : 2023-09-19 DOI: 10.1134/S2635167623700325
Z. N. Ryabinina, R. G. Kalyakin, M. V. Ryabukhina

The effect of Fe nanoparticles (NPs) on the development of seedlings of Scots pine, English oak and silver birch on the territory of the Buzuluk forest of the Derzhavinsky district forestry, Orenburg region, is studied. It is established that the morphobiological reaction of seedlings to the action of Fe NPs is species specific. For pine and birch seedlings, an Fe NP concentration of 100 mmol/L is toxic, 25 mmol/L has a stimulating effect on the growth of pine seedlings and inhibits the growth of birch seedlings, and 6.25 and 1.56 mmol/L has a stimulating effect on the growth of pine and birch seedlings. At the same time, the morphobiological reactions of pine and birch seedlings are similar. The maximum stimulating effect of Fe NPs on pine and birch seedlings is observed at a concentration of 6.25 mmol/L. The length of the main root in pine seedlings increased by 23.1%; for birch, by 18.7%; the number of adventitious roots, by 1.5 and 2.8%, respectively; and the length of adventitious roots, by 14.4 and 12.1%. The oak seedlings in the experiment show a tolerance to all concentrations (the differences between the experiment and control were not significant). The results of the study can be applied in the cultivation of planting Scots pine and silver birch, including the development of micropropagation technologies, as well as pre-sowing seed preparation, the development of plant-protection programs and the use of growth stimulants.

研究了Fe纳米颗粒(NPs)对奥伦堡地区Derzhavinsky林区Buzuluk森林中苏格兰松、英国橡树和白桦幼苗发育的影响。结果表明,幼苗对铁NPs的形态生物学反应具有物种特异性。对松树和桦树幼苗而言,铁NP浓度为100 mmol/L时为有毒,25 mmol/L时对松树幼苗生长有刺激作用,对桦树幼苗生长有抑制作用,6.25和1.56 mmol/L时对松树和桦树幼苗生长有刺激作用。同时,松树和桦树幼苗的形态生物学反应是相似的。铁NPs对松木和桦木幼苗的刺激作用在6.25 mmol/L时达到最大。松树幼苗主根长度增加了23.1%;桦树为18.7%;不定根数,分别下降1.5%和2.8%;不定根长度分别增加14.4%和12.1%。实验中的橡树幼苗对所有浓度都表现出耐受性(实验与对照之间的差异不显著)。研究结果可应用于种植苏格兰松和白桦的栽培,包括开发微繁技术,以及播前准备种子,制定植物保护计划和使用生长刺激剂。
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引用次数: 0
Prospects for Using Metagenomic Analysis As a Tool for The Accurate Diagnosis of Capripoxvirus Infections in Farm Animals 应用宏基因组分析作为准确诊断农场动物卡普病毒感染的工具的前景
IF 0.8 Q3 Engineering Pub Date : 2023-09-19 DOI: 10.1134/S2635167623700222
S. V. Toshchakov, E. V. Grosfeld, A. D. Kozlova, A. S. Krylova, M. V. Patrushev

Infectious diseases of small domestic ruminants caused by viruses belonging to the Capripoxvirus genus are a serious economic threat. However, the diagnostic tools currently available for these pathogens do not provide sufficient strain information for effective disease control. This can be solved by sequencing and analysis of the full virus genome, which is currently achievable by the use of next generation sequencing technologies followed by metagenomic analysis. This review discusses the biology of Capripoxvirus pathogens, and the diagnostic and disease control tools in the context of introducing metagenomic analysis as the primary tool for pathogen identification.

由狐痘病毒属病毒引起的家畜小反刍动物传染病是严重的经济威胁。然而,目前可用于这些病原体的诊断工具不能为有效的疾病控制提供足够的菌株信息。这可以通过对病毒全基因组进行测序和分析来解决,目前可以通过使用下一代测序技术,然后进行宏基因组分析来实现。本文在介绍宏基因组分析作为主要病原体鉴定工具的背景下,综述了狐痘病毒病原体的生物学、诊断和疾病控制工具。
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引用次数: 0
Transcriptomic Profiles of Three Peach (Prunus Persica (L.) Batsch) Cultivars with Different Ripening Periods at the Initial Fruiting Stages 3种桃(Prunus Persica (L.))的转录组学分析不同成熟期的初结实品种
IF 0.8 Q3 Engineering Pub Date : 2023-09-19 DOI: 10.1134/S2635167622600079
M. V. Gladysheva-Azgari, N. V. Slobodova, E. S. Boulygina, F. S. Sharko, S. M. Rastorguev, A. V. Smykov, I. V. Mitrofanova, S. V. Tsygankova

The formation and maturation of stone fruits are complex processes that require the involvement of many genes and gene products. Early research on the peach fruit (Prunus persica (L.) Batsch) and the differences in ripening periods of its cultivars mainly focused on the already ripe fruit. However, in the early stages of fruit formation, there may be significant differences between cultivars that have different ripening periods. We identify and analyze differentially expressed genes (DEGs) between flowers, fertilized ovaries, and fruits at the S1 stage in cultivars that have different ripening periods, both between cultivars and from stage to stage. Gene expression in peach cultivars that have different ripening periods differs even in the early stages of fruit formation. The most significantly enriched categories of DEGs in this case are photosynthesis, redox reactions, and processes associated with cell-wall modification; thus, by the time the fruit forms, hormonal reception becomes more important.

核果的形成和成熟是一个复杂的过程,需要许多基因和基因产物的参与。桃果实(Prunus persica, L.)的早期研究不同品种成熟期的差异主要集中在已经成熟的果实上。然而,在果实形成的早期阶段,不同成熟期的品种之间可能存在显著差异。我们鉴定并分析了不同成熟期的品种的花、受精卵和S1期果实之间的差异表达基因(DEGs),包括品种之间和不同成熟期的差异表达基因。不同成熟期的桃品种在果实形成初期的基因表达也存在差异。在这种情况下,最显著富集的deg类别是光合作用、氧化还原反应和与细胞壁修饰相关的过程;因此,在果实形成的时候,激素的接收变得更加重要。
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引用次数: 0
Estimation of the Phytostimulating Potential of a New Highly Dispersed Metallurgical Sludge‒Humic Acid Agricultural Product Using the Example of Wheat 一种新型高分散冶金污泥腐植酸农产品的植物刺激潜能评价——以小麦为例
IF 0.8 Q3 Engineering Pub Date : 2023-09-19 DOI: 10.1134/S2635167623700283
D. G. Churilov, S. D. Polishchuk, A. V. Shemyakin, G. I. Churilov, V. V. Churilova

An approach is proposed for solving two urgent problems: the environmentally safe conversion of metal-containing sludges and the creation of efficient and low-cost agricultural fertilizers from them. The highly dispersed state of the sludge makes it bioactive and its use in the form of a dispersed metallurgical sludge (S)‒natural component humic acids (HA) complex makes it biocompatible with plants and more environmentally safe. The optimum HAs : S concentration ratios (1 : 5) in the complex are determined when using it as a plant growth and development stimulator. A set of analytical methods, including optical and scanning electron microscopy, energy-dispersive X-ray microanalysis, X-ray diffraction, and infrared (IR) spectroscopy, is applied. An increase in the activity of catalase and peroxidase enzymes and, as a result, in wheat growth rates facilitates an increase in the yield by 20% when the complex is used.

提出了一种解决两个紧迫问题的方法:环境安全的含金属污泥转化和从中创造高效和低成本的农业肥料。污泥的高度分散状态使其具有生物活性,并以分散的冶金污泥(S) -天然成分腐植酸(HA)复合物的形式使用,使其与植物具有生物相容性,更环保。当将其用作植物生长发育刺激剂时,确定了复合物中最佳的HAs: S浓度比(1:5)。应用了一套分析方法,包括光学和扫描电子显微镜,能量色散x射线微分析,x射线衍射和红外(IR)光谱。过氧化氢酶和过氧化物酶的活性增加,从而提高小麦的生长速度,当使用该复合物时,可使产量增加20%。
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引用次数: 0
Biosafety Assessment of a Selenium-Containing Nanocomposite Based on a Polysaccharide Matrix of Starch 基于淀粉多糖基质的含硒纳米复合材料的生物安全性评价
IF 0.8 Q3 Engineering Pub Date : 2023-09-19 DOI: 10.1134/S2635167623700271
M. V. Zvereva

The results of the first study of the biological effect of a starch–Se0NP (nanoparticle) nanocomposite on healthy and Cms-infected (Clavibacter michiganensis sepedonicus) potato plants (Solanum tuberosum) are presented. It is found that the addition of an aqueous solution of starch-stabilized Se0 nanoparticles with an average size of 22 nm to the plant medium is accompanied by the absence of a pronounced deviation in the values of the quantitative content of intermediate and final products of the process of lipid peroxidation (diene conjugates and malondialdehyde) in leaves from physiologically normal in the control and maintenance of the physiological ratio of chlorophyll a/b at a level of 1 : 3, even under conditions of its preliminary disturbance, together with a slight (by 30%) increase in the content of total chlorophyll (as in the case of infected plants). The results obtained indicate the absence of any negative effect of the starch–Se0NP nanocomposite on the antioxidant system and chlorophyll reserve in the plant organism, which confirms the safety of the resulting nanocomposite for potato plants.

本文首次研究了淀粉- se0np(纳米颗粒)纳米复合材料对健康和感染cm的马铃薯植株(Solanum tuberosum)的生物学效应。发现添加的水溶液中starch-stabilized Se0 22纳米的纳米粒子平均尺寸工厂中伴随着缺乏明显的偏差值的中间和最终产品的定量内容的脂质过氧化作用的过程(二烯共轭和丙二醛)的叶子从生理正常生理的比例控制和维护的叶绿素a / b的水平1:3,即使在其初步受到干扰的情况下,总叶绿素含量也会略有(30%)增加(如受感染的植物)。结果表明,淀粉- se0np纳米复合材料对植物体内的抗氧化系统和叶绿素储备没有任何负面影响,证实了该纳米复合材料对马铃薯植物的安全性。
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引用次数: 0
期刊
Nanotechnologies in Russia
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