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Correction to: Valorization of Agricultural Residues to Valuable Products: A Circular Bioeconomy Approach. 修正:农业残留物对有价值产品的增值:循环生物经济方法。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2025_286
Stefan Shilev, Ivelina Neykova, Slaveya Petrova
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引用次数: 0
From Knallgas Bacterium to Promising Biomanufacturing Host: The Evolution of Cupriavidus necator. 从 Knallgas 菌到有前途的生物制造宿主:裸冠突铜绿菌的进化。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2024_269
Daniel Casey, Laura Diaz-Garcia, Mincen Yu, Kang Lan Tee, Tuck Seng Wong

The expanding field of synthetic biology requires diversification of microbial chassis to expedite the transition from a fossil fuel-dependent economy to a sustainable bioeconomy. Relying exclusively on established model organisms such as Escherichia coli and Saccharomyces cerevisiae may not suffice to drive the profound advancements needed in biotechnology. In this context, Cupriavidus necator, an extraordinarily versatile microorganism, has emerged as a potential catalyst for transformative breakthroughs in industrial biomanufacturing. This comprehensive book chapter offers an in-depth review of the remarkable technological progress achieved by C. necator in the past decade, with a specific focus on the fields of molecular biology tools, metabolic engineering, and innovative fermentation strategies. Through this exploration, we aim to shed light on the pivotal role of C. necator in shaping the future of sustainable bioprocessing and bioproduct development.

合成生物学领域不断扩大,要求微生物底盘多样化,以加快从依赖化石燃料的经济向可持续生物经济过渡。仅仅依靠大肠杆菌和酿酒酵母等成熟的模式生物可能不足以推动生物技术所需的巨大进步。在这种情况下,Cupriavidus necator(一种用途极为广泛的微生物)已成为工业生物制造领域实现变革性突破的潜在催化剂。本书的这一章节深入回顾了过去十年中C. necator所取得的显著技术进步,特别关注分子生物学工具、代谢工程和创新发酵策略等领域。通过这一探索,我们旨在阐明 C. necator 在塑造可持续生物加工和生物产品开发的未来方面所发挥的关键作用。
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引用次数: 0
Cable Bacteria and Their Biotechnological Application. 电缆细菌及其生物技术应用。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2025_284
Judith Stiefelmaier

Cable bacteria grow as multicellular filaments several centimetres deep into the sediment of freshwaters and oceans. Hereby, cable bacteria show unique characteristics such as electrogenic sulphur oxidation, extremely high conductivity and ability for CO2 fixation. This offers several possibilities of future applications in biotechnology with an outlook to sustainable processes. So far, research on cable bacteria is mostly concerning metabolism, electron transfer and effect on the surrounding sediment. Cultures are always performed on sediment from the natural habitat and in simple, small-scale reaction tubes, requiring further development for reproducible cultivation with scale-up capabilities. However, based on the known properties of cable bacteria, possible areas of application can already be derived. The use of cable bacteria in bioremediation is a promising approach, as the degradation of hydrocarbons has already been proven. Co-cultivation with plants could open up a further field of application, such as the described reduction of methane emissions from rice fields. Due to the extremely high conductivity of the filaments, cable bacteria are also very promising for incorporation into biodegradable microelectronics. By integrating electrodes into a suitable reactor system, bioelectrochemical processes could be implemented, either with the goal of electron uptake and product formation or for electricity generation.

电缆细菌以多细胞细丝的形式生长在几厘米深的淡水和海洋沉积物中。因此,电缆细菌表现出电致硫氧化、极高导电性和CO2固定能力等独特的特性。这为生物技术的未来应用提供了几种可能性,并展望了可持续的过程。目前,对电缆细菌的研究主要集中在代谢、电子传递和对周围沉积物的影响等方面。培养总是在自然栖息地的沉积物上进行,并在简单的小规模反应管中进行,需要进一步开发具有放大能力的可复制培养。然而,基于已知电缆细菌的特性,可能的应用领域已经可以推导出来。在生物修复中使用电缆细菌是一种很有前途的方法,因为碳氢化合物的降解已经得到证实。与植物共耕可以开辟更广阔的应用领域,例如上述减少稻田甲烷排放的方法。由于线材具有极高的导电性,电缆细菌也非常有希望被纳入生物可降解微电子中。通过将电极集成到一个合适的反应器系统中,生物电化学过程可以实现,要么是电子吸收和产物形成,要么是发电。
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引用次数: 0
Mixed Strain Fermentation and Metabonomics for Solving Issues of Bioproduction. 混合菌种发酵和代谢经济学解决生物生产问题。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2024_266
Elias Hakalehto, Reino Laatikainen, Jouni Pesola, Erik Dahlquist, Jeremy Everett

In the research of mixed microbial cultures, the numbers and identifications of individual strains are often only partially unknown. Their metabolic capabilities are also not wholly predictable especially if the joint potential is to be understood. In these kinds of situations, deeper insight into the variable microbial communities cannot be obtained by genetic analysis only. Even more critical than the taxonomic aspect is usually the functional metabolic outcome of the mixed flora in question. The results from such studies as NMR (nucleic magnetic resonance) give a precise view from versatile angles into the biochemical activities during the multiparametric metabolic responses of the microflora as a whole.Originally, metabonomics was mainly used for the pathophysiological research of various microbes or for recording the genetic or biochemical modifications of mixed microflora. This approach offers a tool for monitoring changes in microscopic or otherwise confined ecosystems or at multiple locations from which representative specimens are difficult to obtain. It also offers repeatability in various processes. In microbiological studies, the research group can attain overall views on variable populations and their alterations in time and space.

在混合微生物培养物的研究中,单个菌株的数量和鉴定往往是完全或部分未知的。它们的新陈代谢能力也有部分是不可预测的,尤其是在需要了解联合潜力的情况下。在这种情况下,仅靠基因分析无法深入了解多变的微生物群落。通常,比分类学方面更重要的是混合菌群的功能代谢结果。核磁共振(NMR)等研究结果可从多个角度精确观察整个微生物群的多参数代谢反应过程中的生化活动。这种方法为监测微观或其他封闭生态系统或难以获得代表性标本的多个地点的变化提供了一种工具。在微生物学研究中,研究小组可以全面了解可变种群及其在时间和空间上的变化。
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引用次数: 0
Production of Novel Energy Gases in Bioprocesses Using Undefined Mixed Cultures. 利用未定义混合培养物在生物过程中生产新型能源气体。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2024_267
Elias Hakalehto, Ari Jääskeläinen
<p><p>Three phases of matter intermingle in various environments. The phenomena behind these fluctuations provide microbial cultures with beneficial interphase on the borderlines. Correspondingly, a bioreactor broth usually consists of a liquid phase but also contains solid particles, gas bubbles, technical surfaces, and other niches, both on a visible scale and microscopically. The diffusion limitation in the suspension is a remarkable hindrance to the reaction sequence during production. It must be overcome technically. Gas flow into the reactor could serve this purpose, and the outgoing stream or bubbling contains volatile products. The various mixing elements or gas flows should be moderated if shear forces disturb the cell growth, biochemical production, enzymatic activity, or any other crucial biological or physicochemical parameters. The focus is to optimize energy production in the form of liberated gases or their mixtures. Many combustible flows need to get purified, depending on their purpose, for example, for various engines. They provide novel sources for traffic in the air, streets, roads, and waterways, not forgetting space technology dimensions.On the other hand, industrial fuels are often used as mixtures of gases or gases with other substances. This approach may facilitate the utilization of side streams. Also, municipal energy needs can be fulfilled by microbial gases. Microbial mixed cultures could play an essential role in the big picture of sustainable industries, living of people and agriculture, exhibiting an excessive total effect on societies' multifactorial development. The gas phase is key to realizing their potential.Gaseous emissions are inherent part of all forms of microbial metabolism, both aerobic and anoxic ones. Carbon dioxide is liberated both in respiration and fermentation, but the microbiota also binds volatile carbon compounds. CO<sub>2</sub> is also a raw material for plant cultivation, e.g., in greenhouses or in algal pools which both often represent the first steps of food chains. Additionally, they produce biomass to produce energy, biochemicals, nutrition, and soil improvement. Gaseous products of the mixed microbial cultures are valuable sources for energy production as purified gases (e.g., biomethane, biohydrogen) or as mixtures (e.g., bio-hythane, volatiles). These relatively simple molecules also serve as supplies for other hydrocarbons (e.g., methanol). Also, many microbial metabolites serve as fuel sources (e.g., bio-oil) and substrates for further biosynthesis. This versatility of potential technological options in energy-making and for industrial processes could offer huge opportunities for green energies and sustainable industries, transportation, or municipalities. In the agricultural sector, the complete recycling also includes the consideration of gas phase. This aspect provides increasing sources for clean food production. Moreover, the chemoautotrophic bacteria, including the archaeal st
物质的三个阶段在不同的环境中混合。这些波动背后的现象为微生物培养在边界上提供了有益的间期。相应地,生物反应器的肉汤通常由液相组成,但也包含固体颗粒、气泡、技术表面和其他可见尺度和微观尺度上的壁龛。在生产过程中,悬浮液中的扩散限制是影响反应顺序的重要因素。必须在技术上加以克服。进入反应器的气体可以达到这个目的,而流出的气流或冒泡含有挥发性产物。如果剪切力干扰细胞生长、生化生产、酶活性或任何其他关键的生物或物理化学参数,则应调节各种混合元素或气体流动。重点是以释放气体或其混合物的形式优化能源生产。许多可燃气流需要净化,这取决于它们的用途,例如不同的发动机。它们为空中、街道、道路和水路的交通提供了新的来源,同时也不忘记空间技术的维度。另一方面,工业燃料通常作为气体或气体与其他物质的混合物使用。这种方法可以促进侧流的利用。此外,微生物气体可以满足城市能源需求。微生物混合培养可以在可持续工业、生活和农业的大图景中发挥重要作用,对社会的多因素发展表现出过度的总体影响。气相是实现其潜力的关键。气体排放是所有形式的微生物代谢的固有部分,无论是有氧代谢还是缺氧代谢。二氧化碳在呼吸和发酵过程中被释放出来,但微生物群也会结合挥发性碳化合物。二氧化碳也是植物种植的原料,例如在温室或藻池中,这两者都代表了食物链的第一步。此外,它们还生产生物质来生产能源、生物化学、营养和土壤改良。混合微生物培养物的气态产物作为纯化气体(如生物甲烷、生物氢)或混合物(如生物乙烷、挥发物)是能源生产的宝贵来源。这些相对简单的分子也可以作为其他碳氢化合物(如甲醇)的原料。此外,许多微生物代谢物作为燃料来源(例如生物油)和进一步生物合成的底物。能源制造和工业过程中潜在技术选择的多功能性可以为绿色能源和可持续工业、交通或市政提供巨大的机会。在农业部门,完全回收还包括气相的考虑。这方面为清洁食品生产提供了越来越多的来源。此外,包括古细菌菌株在内的趋化自养细菌可以产生供人类使用的新型生物基产品。生物过程通常由生物组分、反应器或容器溶液及其控制和调节手段组成。通过一些项目实例,介绍了这两种技术主流的结合,这两种技术主流应该“共生”以获得最佳效果。这种新颖的方法可能会使工业、农业和市政当局的人类活动进入“零浪费”的境地。与此同时,经济上可行和可持续的原材料来源及其加工的新的全球资源将会出现。在这个新的技术生态系统中,与生物圈的连接将恢复,并使我们的社会保持在健康的基础上,这要归功于微生物和它们的群落。本章介绍了其中的一些可能性。
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引用次数: 0
Simultaneous CO2 Absorption from a Power Plant and Wastewater Treatment. 发电厂和废水处理同时吸收二氧化碳。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2024_260
Erik Dahlquist, Sebastian Schwede, Eva Thorin

There is a demand to remove CO2 from thermal plants to abate global warming. At the same time authorities demand treating wastewater to remove nitrogen and phosphorus and also to produce food. By combining algae farming at a power plant and using nutrients from the wastewater, actions to meet all these demands can be combined to a win-win situation. In this paper we make estimates what the dimensions and design criteria there would be for such an integrated system. The size of the algae farm will be significant. If placed in the sea, this may be feasible, but then storms must be considered. If we place in lakes, it is more competition for other uses that causes a problem. Combining with also greenhouses may be a possible solution. The biomass produced can be used directly as food or be processed by, e.g., fermentation to produce chemicals and methane (biogas).

人们要求从热电厂中去除二氧化碳,以减缓全球变暖。同时,政府要求处理废水以去除氮和磷,并生产食品。通过将发电厂的藻类养殖与利用废水中的营养物质结合起来,可以满足所有这些需求,实现双赢。在本文中,我们对这种综合系统的规模和设计标准进行了估算。藻类养殖场的规模将十分巨大。如果放在海中,也许可行,但必须考虑到风暴。如果放在湖泊中,则会与其他用途形成更多竞争,从而造成问题。与温室相结合可能是一个可行的解决方案。产生的生物质可以直接用作食物,也可以通过发酵等方式进行处理,产生化学品和甲烷(沼气)。
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引用次数: 0
Correction to: Mixed Culture Cultivation in Microbial Bioprocesses. 更正:微生物生物工艺中的混合培养。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2024_258
Manisha Khedkar, Dattatray Bedade, Rekha S Singhal, Sandip B Bankar
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引用次数: 0
Food and Forest Industry Waste Reuse Using Mixed Microflora. 利用混合菌群对食品和林业废弃物进行再利用。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2024_268
Elias Hakalehto, Anneli Heitto, Frank Adusei-Mensah, Ari Jääskeläinen, Reino Laatikainen, Jukka Kivelä, Erik Dahlquist, Jan den Boer, Emilia den Boer

Organic raw materials are the renewable sources of substrates for our industries and for our microbial communities. As industrial, agricultural or forestry side streams, they are usually affordable raw materials if the process entities, equipment and protocols are properly designed. The microbial communities that are used as biocatalysts take care of the process development together with the process team. Moreover, they constitute or shape the process to resemble the natural bioprocess as it takes place or occurs in nature and thus make it "Industry Like Nature®" - type of endeavor. As an ultimate result, we could make our industries increasingly 100% sustainable with the help of microbes. In case of food or forest industry side streams, this means fossil-free production of valuable chemicals, food and feed components, energy and gases, and soil improvement agents or organic fertilizers. The so-called "Finnoflag biorefinery" idea has been tested in many cases together with domestic and international colleagues and industries. In here, we attempt to share the basic thinking.

有机原料是我们工业和微生物群落的可再生基质。作为工业、农业或林业侧流,如果工艺实体、设备和协议设计得当,它们通常是负担得起的。用作生物催化剂的微生物群落与我们或工艺团队一起负责工艺开发。此外,它们构成或塑造过程,使其类似于自然界中发生或发生的自然生物过程,从而使其成为“自然工业®”类型的努力。最终的结果是,在微生物的帮助下,我们可以使我们的工业越来越100%可持续。在食品或森林工业侧流的情况下,这意味着有价值的化学品,食品和饲料成分,能源和气体,土壤改良或有机肥料的无化石生产。所谓的“Finnoflag生物炼制”理念已经与国内外同行和行业一起在许多情况下进行了测试。在这里,我们试图分享基本的思考。
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引用次数: 0
Microbial Electrochemical Technologies: Sustainable Solutions for Addressing Environmental Challenges. 微生物电化学技术:应对环境挑战的可持续解决方案。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2024_273
Laura Rovira-Alsina, Meritxell Romans-Casas, Elisabet Perona-Vico, Alba Ceballos-Escalera, M Dolors Balaguer, Lluís Bañeras, Sebastià Puig

Addressing global challenges of waste management demands innovative approaches to turn biowaste into valuable resources. This chapter explores the potential of microbial electrochemical technologies (METs) as an alternative opportunity for biowaste valorisation and resource recovery due to their potential to address limitations associated with traditional methods. METs leverage microbial-driven oxidation and reduction reactions, enabling the conversion of different feedstocks into energy or value-added products. Their versatility spans across gas, food, water and soil streams, offering multiple solutions at different technological readiness levels to advance several sustainable development goals (SDGs) set out in the 2030 Agenda. By critically examining recent studies, this chapter uncovers challenges, optimisation strategies, and future research directions for real-world MET implementations. The integration of economic perspectives with technological developments provides a comprehensive understanding of the opportunities and demands associated with METs in advancing the circular economy agenda, emphasising their pivotal role in waste minimisation, resource efficiency promotion, and closed-loop system renovation.

应对废物管理的全球挑战需要创新方法,将生物废物转化为宝贵的资源。本章探讨了微生物电化学技术(METs)作为生物废物增值和资源回收的替代机会的潜力,因为它们有可能解决与传统方法相关的局限性。METs利用微生物驱动的氧化和还原反应,使不同的原料转化为能源或增值产品。它们的多用途性涵盖天然气、食品、水和土壤流,提供不同技术准备水平的多种解决方案,以推进2030年议程中设定的若干可持续发展目标(sdg)。通过严格审查最近的研究,本章揭示了现实世界MET实现的挑战,优化策略和未来的研究方向。将经济观点与技术发展相结合,可以全面了解与met相关的机会和需求,以推进循环经济议程,强调它们在减少废物、提高资源效率和闭环系统改造方面的关键作用。
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引用次数: 0
Recycling Biowaste and Residuals into Chemical Products. 将生物废物和残留物回收利用为化学产品。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2025_280
Thomas Bayer, Alexander May, Manfred Kircher

Today, organic chemical products are predominantly produced based on fossil raw materials. The demand for climate-friendly products, legal requirements and the EU emissions trading scheme (EU-ETS) are forcing the chemical industry to focus on increased recycling and production based on CO2 and biomass in the future. To avoid competition with the food sector associated with the industrial use of biomass, organic waste, residual materials and CO2 are to be tapped as carbon sources. This chapter describes the volume potential of these alternative raw materials in the EU and technologies for their utilisation in basic, speciality and fine chemical products for various applications and markets. The question of the availability of sustainable carbon sources arises for the large-volume products of basic chemistry. A detailed techno-economic analysis (TEA) to produce methanol based on CO2 is therefore presented as an example. Finally, the requirements for achieving the raw material transition by 2050 are discussed.

今天,有机化工产品主要是基于化石原料生产的。对气候友好型产品的需求、法律要求和欧盟排放交易计划(EU- ets)迫使化学工业在未来将重点放在增加基于二氧化碳和生物质的回收和生产上。为避免与生物质的工业利用相关的粮食部门竞争,将利用有机废物、残余材料和二氧化碳作为碳源。本章描述了这些替代原材料在欧盟的数量潜力,以及它们在各种应用和市场的基础、特种和精细化学产品中的应用技术。对于基础化学的大量产品,可持续碳源的可用性问题出现了。因此,以详细的技术经济分析(TEA)为例,介绍了以二氧化碳为基础生产甲醇的方法。最后,讨论了到2050年实现原材料转型的要求。
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引用次数: 0
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Advances in biochemical engineering/biotechnology
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