Tochukwu Ekwonna, Olusegun Akindeju, Brianna Amos, Zhi-Qing Lin
Selenium (Se) is a naturally occurring trace element that is nutritionally essential for humans and animals, but becomes toxic at high concentrations. This laboratory study explored the role of microbes in Se removal from contaminated wastewater via biological transformation and volatilization processes. Microbes could immobilize water-soluble selenate (SeO42-) and selenite (SeO32-) to water-insoluble elemental Se (Se0) and transform Se into volatile Se compounds found in the atmosphere. Results of this laboratory study showed that Bacillus cereus, a bacterial strain isolated from wheat straw and biosolid-WTR-sand substrates showed a significant biotransformation ability of reducing selenate and selenite to elemental Se and forming volatile Se organic compounds in wastewater. Overall, microbial Se chemical reduction, methylation, and volatilization are important processes in bioremediation of Se-contaminated wastewater.
{"title":"Selenium Removal from Wastewater by Microbial Transformation and Volatilization.","authors":"Tochukwu Ekwonna, Olusegun Akindeju, Brianna Amos, Zhi-Qing Lin","doi":"10.1007/10_2023_242","DOIUrl":"10.1007/10_2023_242","url":null,"abstract":"<p><p>Selenium (Se) is a naturally occurring trace element that is nutritionally essential for humans and animals, but becomes toxic at high concentrations. This laboratory study explored the role of microbes in Se removal from contaminated wastewater via biological transformation and volatilization processes. Microbes could immobilize water-soluble selenate (SeO<sub>4</sub><sup>2-</sup>) and selenite (SeO<sub>3</sub><sup>2-</sup>) to water-insoluble elemental Se (Se<sup>0</sup>) and transform Se into volatile Se compounds found in the atmosphere. Results of this laboratory study showed that Bacillus cereus, a bacterial strain isolated from wheat straw and biosolid-WTR-sand substrates showed a significant biotransformation ability of reducing selenate and selenite to elemental Se and forming volatile Se organic compounds in wastewater. Overall, microbial Se chemical reduction, methylation, and volatilization are important processes in bioremediation of Se-contaminated wastewater.</p>","PeriodicalId":7198,"journal":{"name":"Advances in biochemical engineering/biotechnology","volume":" ","pages":"125-136"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139711172","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Manisha Khedkar, Dattatray Bedade, Rekha S Singhal, Sandip B Bankar
Mixed culture cultivation is well renowned for industrial applications due to its technological and economic benefits in bioprocess, food processing, and pharmaceutical industries. A mixed consortium encompasses to achieve growth in unsterile conditions, robustness to environmental stresses, perform difficult functions, show better substrate utilization, and increase productivity. Hence, mixed cultures are being valorized currently and has also augmented our understanding of microbial activities in communities. This chapter covers a wide range of discussion on recent improvements in mixed culture cultivation for microbial bioprocessing and multifarious applications in different areas. The history of microbial culture, microbial metabolism in mixed culture, biosynthetic pathway studies, isolation and identification of strains, along with the types of microbial interactions involved during their production and propagation, are meticulously detailed in the current chapter. Besides, parameters for evaluating mixed culture performance, large-scale production, and challenges associated with it are also discussed vividly. Microbial community, characteristics of single and mixed culture fermentation, and microbe-microbe interactions in mixed cultures have been summarized comprehensively. Lastly, various challenges and opportunities in the area of microbial mixed culture that are obligatory to improve the current knowledge of microbial bioprocesses are projected.
{"title":"Mixed Culture Cultivation in Microbial Bioprocesses.","authors":"Manisha Khedkar, Dattatray Bedade, Rekha S Singhal, Sandip B Bankar","doi":"10.1007/10_2023_248","DOIUrl":"10.1007/10_2023_248","url":null,"abstract":"<p><p>Mixed culture cultivation is well renowned for industrial applications due to its technological and economic benefits in bioprocess, food processing, and pharmaceutical industries. A mixed consortium encompasses to achieve growth in unsterile conditions, robustness to environmental stresses, perform difficult functions, show better substrate utilization, and increase productivity. Hence, mixed cultures are being valorized currently and has also augmented our understanding of microbial activities in communities. This chapter covers a wide range of discussion on recent improvements in mixed culture cultivation for microbial bioprocessing and multifarious applications in different areas. The history of microbial culture, microbial metabolism in mixed culture, biosynthetic pathway studies, isolation and identification of strains, along with the types of microbial interactions involved during their production and propagation, are meticulously detailed in the current chapter. Besides, parameters for evaluating mixed culture performance, large-scale production, and challenges associated with it are also discussed vividly. Microbial community, characteristics of single and mixed culture fermentation, and microbe-microbe interactions in mixed cultures have been summarized comprehensively. Lastly, various challenges and opportunities in the area of microbial mixed culture that are obligatory to improve the current knowledge of microbial bioprocesses are projected.</p>","PeriodicalId":7198,"journal":{"name":"Advances in biochemical engineering/biotechnology","volume":" ","pages":"9-69"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139989003","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Erik Dahlquist, Eva Thorin, Aubrey Shenk, Sebastian Schwede, Chaudhary Awais Salman, Elias Hakalehto
In this study calculation over material and energy balances for bio-refinery product upgrading using membrane filtration (MF, UF, and RO), distillation, and ion-exchanger has been performed. Tests have been made with UF filtration in a pilot plant, separation tests made at lab with ion-exchanger and simulation using ASPEN plus simulator for distillation. Rough economic analysis has been made for the different solutions/techniques.
在这项研究中,利用膜过滤(MF、UF 和 RO)、蒸馏和离子交换器对生物精炼产品升级的材料和能量平衡进行了计算。在试点工厂进行了超滤过滤试验,在实验室进行了离子交换器分离试验,并使用 ASPEN plus 模拟器对蒸馏进行了模拟。对不同的解决方案/技术进行了粗略的经济分析。
{"title":"Investigation of Upgrading of Products from Finnoflag Bio-refinery Pilot in Tampere.","authors":"Erik Dahlquist, Eva Thorin, Aubrey Shenk, Sebastian Schwede, Chaudhary Awais Salman, Elias Hakalehto","doi":"10.1007/10_2024_261","DOIUrl":"10.1007/10_2024_261","url":null,"abstract":"<p><p>In this study calculation over material and energy balances for bio-refinery product upgrading using membrane filtration (MF, UF, and RO), distillation, and ion-exchanger has been performed. Tests have been made with UF filtration in a pilot plant, separation tests made at lab with ion-exchanger and simulation using ASPEN plus simulator for distillation. Rough economic analysis has been made for the different solutions/techniques.</p>","PeriodicalId":7198,"journal":{"name":"Advances in biochemical engineering/biotechnology","volume":" ","pages":"213-240"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142724444","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Runze Pan, Jingxiang Sun, Fengxue Xin, Wankui Jiang, Min Jiang
Biomass pretreatment plays a crucial role in the conversion of lignocellulosic biowaste materials into valuable biofuels and biochemicals. Enzymatic pretreatment, in particular, has gained significant attention due to its eco-friendly nature and efficiency in breaking down complex biomass structures. This comprehensive review aims to provide an overview of enzymes used in biomass pretreatment, including cellulases, hemicellulases, ligninases, and their applications in enhancing the efficiency of biomass conversion processes. The review also discusses recent advancements, challenges, and future prospects in the field of enzymatic biomass pretreatment.
{"title":"Enzymes for Biomass Pretreatment: A Comprehensive Review.","authors":"Runze Pan, Jingxiang Sun, Fengxue Xin, Wankui Jiang, Min Jiang","doi":"10.1007/10_2025_275","DOIUrl":"10.1007/10_2025_275","url":null,"abstract":"<p><p>Biomass pretreatment plays a crucial role in the conversion of lignocellulosic biowaste materials into valuable biofuels and biochemicals. Enzymatic pretreatment, in particular, has gained significant attention due to its eco-friendly nature and efficiency in breaking down complex biomass structures. This comprehensive review aims to provide an overview of enzymes used in biomass pretreatment, including cellulases, hemicellulases, ligninases, and their applications in enhancing the efficiency of biomass conversion processes. The review also discusses recent advancements, challenges, and future prospects in the field of enzymatic biomass pretreatment.</p>","PeriodicalId":7198,"journal":{"name":"Advances in biochemical engineering/biotechnology","volume":" ","pages":"99-117"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143802129","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Niël van Wyk, Claudia Borgmeier, Alice Kleber, Esther M Gabor
In the context of climate change, resource scarcity, and a growing global population, sustainable processes and the efficient use of raw materials are imperative. Developing best practices to guide the transition toward a circular economy with minimized waste is essential. Agricultural processes offer inspiration, as they traditionally emphasize the utilization of all parts of cultivated plants. Today, however, there is a pressing need to go beyond basic utilization and focus on the upcycling and valorization of agricultural side streams into high-value products. This chapter examines the wine and grape industry, which generates substantial volumes of side streams, including grape pomace, seeds, stems, and wine lees. In recent years, these material streams have attracted attention for their potential as raw materials rich in bioactive compounds - such as diverse polyphenols, dietary fibers, and organic acids - that can be applied across various sectors, including food, cosmetics, pharmaceuticals, and bioenergy. Key methodologies such as extraction, fermentation, and bioconversion are discussed as pathways to recover and enhance these compounds. Case studies of successful valorization initiatives are presented, demonstrating practical applications of side streams for high-value product creation. An example is the BMBF-funded project "Sustainable Beverages" focusing on the development of fermented drinks made from vine leaves that can be offered as a non-alcoholic alternative to wine. By providing an overview of the current research and technologies in wine waste valorization, this chapter serves as a valuable resource for academics, industry professionals, and policymakers seeking to advance sustainable practices within the wine sector. Ultimately, the upcycling of wine industry residues not only reduces environmental impact but also creates new revenue opportunities, driving innovation and sustainability in the industry.
{"title":"Sustainable Approaches in Viticulture: From Wastes and Side Streams to High-Value Products.","authors":"Niël van Wyk, Claudia Borgmeier, Alice Kleber, Esther M Gabor","doi":"10.1007/10_2025_281","DOIUrl":"10.1007/10_2025_281","url":null,"abstract":"<p><p>In the context of climate change, resource scarcity, and a growing global population, sustainable processes and the efficient use of raw materials are imperative. Developing best practices to guide the transition toward a circular economy with minimized waste is essential. Agricultural processes offer inspiration, as they traditionally emphasize the utilization of all parts of cultivated plants. Today, however, there is a pressing need to go beyond basic utilization and focus on the upcycling and valorization of agricultural side streams into high-value products. This chapter examines the wine and grape industry, which generates substantial volumes of side streams, including grape pomace, seeds, stems, and wine lees. In recent years, these material streams have attracted attention for their potential as raw materials rich in bioactive compounds - such as diverse polyphenols, dietary fibers, and organic acids - that can be applied across various sectors, including food, cosmetics, pharmaceuticals, and bioenergy. Key methodologies such as extraction, fermentation, and bioconversion are discussed as pathways to recover and enhance these compounds. Case studies of successful valorization initiatives are presented, demonstrating practical applications of side streams for high-value product creation. An example is the BMBF-funded project \"Sustainable Beverages\" focusing on the development of fermented drinks made from vine leaves that can be offered as a non-alcoholic alternative to wine. By providing an overview of the current research and technologies in wine waste valorization, this chapter serves as a valuable resource for academics, industry professionals, and policymakers seeking to advance sustainable practices within the wine sector. Ultimately, the upcycling of wine industry residues not only reduces environmental impact but also creates new revenue opportunities, driving innovation and sustainability in the industry.</p>","PeriodicalId":7198,"journal":{"name":"Advances in biochemical engineering/biotechnology","volume":" ","pages":"151-184"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143951854","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Correction to: Valorization of Agricultural Residues to Valuable Products: A Circular Bioeconomy Approach.","authors":"Stefan Shilev, Ivelina Neykova, Slaveya Petrova","doi":"10.1007/10_2025_286","DOIUrl":"10.1007/10_2025_286","url":null,"abstract":"","PeriodicalId":7198,"journal":{"name":"Advances in biochemical engineering/biotechnology","volume":" ","pages":"C1"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144726359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Elias Hakalehto, Reino Laatikainen, Jouni Pesola, Erik Dahlquist, Jeremy Everett
In the research of mixed microbial cultures, the numbers and identifications of individual strains are often only partially unknown. Their metabolic capabilities are also not wholly predictable especially if the joint potential is to be understood. In these kinds of situations, deeper insight into the variable microbial communities cannot be obtained by genetic analysis only. Even more critical than the taxonomic aspect is usually the functional metabolic outcome of the mixed flora in question. The results from such studies as NMR (nucleic magnetic resonance) give a precise view from versatile angles into the biochemical activities during the multiparametric metabolic responses of the microflora as a whole.Originally, metabonomics was mainly used for the pathophysiological research of various microbes or for recording the genetic or biochemical modifications of mixed microflora. This approach offers a tool for monitoring changes in microscopic or otherwise confined ecosystems or at multiple locations from which representative specimens are difficult to obtain. It also offers repeatability in various processes. In microbiological studies, the research group can attain overall views on variable populations and their alterations in time and space.
{"title":"Mixed Strain Fermentation and Metabonomics for Solving Issues of Bioproduction.","authors":"Elias Hakalehto, Reino Laatikainen, Jouni Pesola, Erik Dahlquist, Jeremy Everett","doi":"10.1007/10_2024_266","DOIUrl":"10.1007/10_2024_266","url":null,"abstract":"<p><p>In the research of mixed microbial cultures, the numbers and identifications of individual strains are often only partially unknown. Their metabolic capabilities are also not wholly predictable especially if the joint potential is to be understood. In these kinds of situations, deeper insight into the variable microbial communities cannot be obtained by genetic analysis only. Even more critical than the taxonomic aspect is usually the functional metabolic outcome of the mixed flora in question. The results from such studies as NMR (nucleic magnetic resonance) give a precise view from versatile angles into the biochemical activities during the multiparametric metabolic responses of the microflora as a whole.Originally, metabonomics was mainly used for the pathophysiological research of various microbes or for recording the genetic or biochemical modifications of mixed microflora. This approach offers a tool for monitoring changes in microscopic or otherwise confined ecosystems or at multiple locations from which representative specimens are difficult to obtain. It also offers repeatability in various processes. In microbiological studies, the research group can attain overall views on variable populations and their alterations in time and space.</p>","PeriodicalId":7198,"journal":{"name":"Advances in biochemical engineering/biotechnology","volume":" ","pages":"71-89"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142715012","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
<p><p>Three phases of matter intermingle in various environments. The phenomena behind these fluctuations provide microbial cultures with beneficial interphase on the borderlines. Correspondingly, a bioreactor broth usually consists of a liquid phase but also contains solid particles, gas bubbles, technical surfaces, and other niches, both on a visible scale and microscopically. The diffusion limitation in the suspension is a remarkable hindrance to the reaction sequence during production. It must be overcome technically. Gas flow into the reactor could serve this purpose, and the outgoing stream or bubbling contains volatile products. The various mixing elements or gas flows should be moderated if shear forces disturb the cell growth, biochemical production, enzymatic activity, or any other crucial biological or physicochemical parameters. The focus is to optimize energy production in the form of liberated gases or their mixtures. Many combustible flows need to get purified, depending on their purpose, for example, for various engines. They provide novel sources for traffic in the air, streets, roads, and waterways, not forgetting space technology dimensions.On the other hand, industrial fuels are often used as mixtures of gases or gases with other substances. This approach may facilitate the utilization of side streams. Also, municipal energy needs can be fulfilled by microbial gases. Microbial mixed cultures could play an essential role in the big picture of sustainable industries, living of people and agriculture, exhibiting an excessive total effect on societies' multifactorial development. The gas phase is key to realizing their potential.Gaseous emissions are inherent part of all forms of microbial metabolism, both aerobic and anoxic ones. Carbon dioxide is liberated both in respiration and fermentation, but the microbiota also binds volatile carbon compounds. CO<sub>2</sub> is also a raw material for plant cultivation, e.g., in greenhouses or in algal pools which both often represent the first steps of food chains. Additionally, they produce biomass to produce energy, biochemicals, nutrition, and soil improvement. Gaseous products of the mixed microbial cultures are valuable sources for energy production as purified gases (e.g., biomethane, biohydrogen) or as mixtures (e.g., bio-hythane, volatiles). These relatively simple molecules also serve as supplies for other hydrocarbons (e.g., methanol). Also, many microbial metabolites serve as fuel sources (e.g., bio-oil) and substrates for further biosynthesis. This versatility of potential technological options in energy-making and for industrial processes could offer huge opportunities for green energies and sustainable industries, transportation, or municipalities. In the agricultural sector, the complete recycling also includes the consideration of gas phase. This aspect provides increasing sources for clean food production. Moreover, the chemoautotrophic bacteria, including the archaeal st
{"title":"Production of Novel Energy Gases in Bioprocesses Using Undefined Mixed Cultures.","authors":"Elias Hakalehto, Ari Jääskeläinen","doi":"10.1007/10_2024_267","DOIUrl":"10.1007/10_2024_267","url":null,"abstract":"<p><p>Three phases of matter intermingle in various environments. The phenomena behind these fluctuations provide microbial cultures with beneficial interphase on the borderlines. Correspondingly, a bioreactor broth usually consists of a liquid phase but also contains solid particles, gas bubbles, technical surfaces, and other niches, both on a visible scale and microscopically. The diffusion limitation in the suspension is a remarkable hindrance to the reaction sequence during production. It must be overcome technically. Gas flow into the reactor could serve this purpose, and the outgoing stream or bubbling contains volatile products. The various mixing elements or gas flows should be moderated if shear forces disturb the cell growth, biochemical production, enzymatic activity, or any other crucial biological or physicochemical parameters. The focus is to optimize energy production in the form of liberated gases or their mixtures. Many combustible flows need to get purified, depending on their purpose, for example, for various engines. They provide novel sources for traffic in the air, streets, roads, and waterways, not forgetting space technology dimensions.On the other hand, industrial fuels are often used as mixtures of gases or gases with other substances. This approach may facilitate the utilization of side streams. Also, municipal energy needs can be fulfilled by microbial gases. Microbial mixed cultures could play an essential role in the big picture of sustainable industries, living of people and agriculture, exhibiting an excessive total effect on societies' multifactorial development. The gas phase is key to realizing their potential.Gaseous emissions are inherent part of all forms of microbial metabolism, both aerobic and anoxic ones. Carbon dioxide is liberated both in respiration and fermentation, but the microbiota also binds volatile carbon compounds. CO<sub>2</sub> is also a raw material for plant cultivation, e.g., in greenhouses or in algal pools which both often represent the first steps of food chains. Additionally, they produce biomass to produce energy, biochemicals, nutrition, and soil improvement. Gaseous products of the mixed microbial cultures are valuable sources for energy production as purified gases (e.g., biomethane, biohydrogen) or as mixtures (e.g., bio-hythane, volatiles). These relatively simple molecules also serve as supplies for other hydrocarbons (e.g., methanol). Also, many microbial metabolites serve as fuel sources (e.g., bio-oil) and substrates for further biosynthesis. This versatility of potential technological options in energy-making and for industrial processes could offer huge opportunities for green energies and sustainable industries, transportation, or municipalities. In the agricultural sector, the complete recycling also includes the consideration of gas phase. This aspect provides increasing sources for clean food production. Moreover, the chemoautotrophic bacteria, including the archaeal st","PeriodicalId":7198,"journal":{"name":"Advances in biochemical engineering/biotechnology","volume":" ","pages":"151-188"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142817023","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Daniel Casey, Laura Diaz-Garcia, Mincen Yu, Kang Lan Tee, Tuck Seng Wong
The expanding field of synthetic biology requires diversification of microbial chassis to expedite the transition from a fossil fuel-dependent economy to a sustainable bioeconomy. Relying exclusively on established model organisms such as Escherichia coli and Saccharomyces cerevisiae may not suffice to drive the profound advancements needed in biotechnology. In this context, Cupriavidus necator, an extraordinarily versatile microorganism, has emerged as a potential catalyst for transformative breakthroughs in industrial biomanufacturing. This comprehensive book chapter offers an in-depth review of the remarkable technological progress achieved by C. necator in the past decade, with a specific focus on the fields of molecular biology tools, metabolic engineering, and innovative fermentation strategies. Through this exploration, we aim to shed light on the pivotal role of C. necator in shaping the future of sustainable bioprocessing and bioproduct development.
合成生物学领域不断扩大,要求微生物底盘多样化,以加快从依赖化石燃料的经济向可持续生物经济过渡。仅仅依靠大肠杆菌和酿酒酵母等成熟的模式生物可能不足以推动生物技术所需的巨大进步。在这种情况下,Cupriavidus necator(一种用途极为广泛的微生物)已成为工业生物制造领域实现变革性突破的潜在催化剂。本书的这一章节深入回顾了过去十年中C. necator所取得的显著技术进步,特别关注分子生物学工具、代谢工程和创新发酵策略等领域。通过这一探索,我们旨在阐明 C. necator 在塑造可持续生物加工和生物产品开发的未来方面所发挥的关键作用。
{"title":"From Knallgas Bacterium to Promising Biomanufacturing Host: The Evolution of Cupriavidus necator.","authors":"Daniel Casey, Laura Diaz-Garcia, Mincen Yu, Kang Lan Tee, Tuck Seng Wong","doi":"10.1007/10_2024_269","DOIUrl":"10.1007/10_2024_269","url":null,"abstract":"<p><p>The expanding field of synthetic biology requires diversification of microbial chassis to expedite the transition from a fossil fuel-dependent economy to a sustainable bioeconomy. Relying exclusively on established model organisms such as Escherichia coli and Saccharomyces cerevisiae may not suffice to drive the profound advancements needed in biotechnology. In this context, Cupriavidus necator, an extraordinarily versatile microorganism, has emerged as a potential catalyst for transformative breakthroughs in industrial biomanufacturing. This comprehensive book chapter offers an in-depth review of the remarkable technological progress achieved by C. necator in the past decade, with a specific focus on the fields of molecular biology tools, metabolic engineering, and innovative fermentation strategies. Through this exploration, we aim to shed light on the pivotal role of C. necator in shaping the future of sustainable bioprocessing and bioproduct development.</p>","PeriodicalId":7198,"journal":{"name":"Advances in biochemical engineering/biotechnology","volume":" ","pages":"59-84"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142370726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Cable bacteria grow as multicellular filaments several centimetres deep into the sediment of freshwaters and oceans. Hereby, cable bacteria show unique characteristics such as electrogenic sulphur oxidation, extremely high conductivity and ability for CO2 fixation. This offers several possibilities of future applications in biotechnology with an outlook to sustainable processes. So far, research on cable bacteria is mostly concerning metabolism, electron transfer and effect on the surrounding sediment. Cultures are always performed on sediment from the natural habitat and in simple, small-scale reaction tubes, requiring further development for reproducible cultivation with scale-up capabilities. However, based on the known properties of cable bacteria, possible areas of application can already be derived. The use of cable bacteria in bioremediation is a promising approach, as the degradation of hydrocarbons has already been proven. Co-cultivation with plants could open up a further field of application, such as the described reduction of methane emissions from rice fields. Due to the extremely high conductivity of the filaments, cable bacteria are also very promising for incorporation into biodegradable microelectronics. By integrating electrodes into a suitable reactor system, bioelectrochemical processes could be implemented, either with the goal of electron uptake and product formation or for electricity generation.
{"title":"Cable Bacteria and Their Biotechnological Application.","authors":"Judith Stiefelmaier","doi":"10.1007/10_2025_284","DOIUrl":"10.1007/10_2025_284","url":null,"abstract":"<p><p>Cable bacteria grow as multicellular filaments several centimetres deep into the sediment of freshwaters and oceans. Hereby, cable bacteria show unique characteristics such as electrogenic sulphur oxidation, extremely high conductivity and ability for CO<sub>2</sub> fixation. This offers several possibilities of future applications in biotechnology with an outlook to sustainable processes. So far, research on cable bacteria is mostly concerning metabolism, electron transfer and effect on the surrounding sediment. Cultures are always performed on sediment from the natural habitat and in simple, small-scale reaction tubes, requiring further development for reproducible cultivation with scale-up capabilities. However, based on the known properties of cable bacteria, possible areas of application can already be derived. The use of cable bacteria in bioremediation is a promising approach, as the degradation of hydrocarbons has already been proven. Co-cultivation with plants could open up a further field of application, such as the described reduction of methane emissions from rice fields. Due to the extremely high conductivity of the filaments, cable bacteria are also very promising for incorporation into biodegradable microelectronics. By integrating electrodes into a suitable reactor system, bioelectrochemical processes could be implemented, either with the goal of electron uptake and product formation or for electricity generation.</p>","PeriodicalId":7198,"journal":{"name":"Advances in biochemical engineering/biotechnology","volume":" ","pages":"193-213"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143646670","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}