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Selenium Removal from Wastewater by Microbial Transformation and Volatilization. 通过微生物转化和挥发去除废水中的硒。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2023_242
Tochukwu Ekwonna, Olusegun Akindeju, Brianna Amos, Zhi-Qing Lin

Selenium (Se) is a naturally occurring trace element that is nutritionally essential for humans and animals, but becomes toxic at high concentrations. This laboratory study explored the role of microbes in Se removal from contaminated wastewater via biological transformation and volatilization processes. Microbes could immobilize water-soluble selenate (SeO42-) and selenite (SeO32-) to water-insoluble elemental Se (Se0) and transform Se into volatile Se compounds found in the atmosphere. Results of this laboratory study showed that Bacillus cereus, a bacterial strain isolated from wheat straw and biosolid-WTR-sand substrates showed a significant biotransformation ability of reducing selenate and selenite to elemental Se and forming volatile Se organic compounds in wastewater. Overall, microbial Se chemical reduction, methylation, and volatilization are important processes in bioremediation of Se-contaminated wastewater.

硒(Se)是一种天然存在的微量元素,是人类和动物所必需的营养元素,但浓度过高时则会产生毒性。这项实验室研究探讨了微生物通过生物转化和挥发过程从受污染的废水中去除硒的作用。微生物可将水溶性硒酸盐(SeO42-)和亚硒酸盐(SeO32-)固定为不溶于水的元素硒(Se0),并将硒转化为大气中的挥发性硒化合物。这项实验室研究的结果表明,从小麦秸秆和生物固体-WTR-砂基质中分离出来的细菌菌株枯草芽孢杆菌(Bacillus cereus)具有显著的生物转化能力,能将硒酸盐和亚硒酸盐还原成元素硒,并在废水中形成挥发性硒有机化合物。总之,微生物硒化学还原、甲基化和挥发是硒污染废水生物修复的重要过程。
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引用次数: 0
Mixed Culture Cultivation in Microbial Bioprocesses. 微生物生物工艺中的混合培养。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2023_248
Manisha Khedkar, Dattatray Bedade, Rekha S Singhal, Sandip B Bankar

Mixed culture cultivation is well renowned for industrial applications due to its technological and economic benefits in bioprocess, food processing, and pharmaceutical industries. A mixed consortium encompasses to achieve growth in unsterile conditions, robustness to environmental stresses, perform difficult functions, show better substrate utilization, and increase productivity. Hence, mixed cultures are being valorized currently and has also augmented our understanding of microbial activities in communities. This chapter covers a wide range of discussion on recent improvements in mixed culture cultivation for microbial bioprocessing and multifarious applications in different areas. The history of microbial culture, microbial metabolism in mixed culture, biosynthetic pathway studies, isolation and identification of strains, along with the types of microbial interactions involved during their production and propagation, are meticulously detailed in the current chapter. Besides, parameters for evaluating mixed culture performance, large-scale production, and challenges associated with it are also discussed vividly. Microbial community, characteristics of single and mixed culture fermentation, and microbe-microbe interactions in mixed cultures have been summarized comprehensively. Lastly, various challenges and opportunities in the area of microbial mixed culture that are obligatory to improve the current knowledge of microbial bioprocesses are projected.

混合培养因其在生物加工、食品加工和制药行业的技术和经济效益而在工业应用中享有盛誉。混合培养菌群可以在无菌条件下生长,对环境压力有很强的适应能力,能执行一些困难的功能,显示出更好的底物利用率,并能提高生产率。因此,混合培养物目前正受到重视,也增进了我们对群落中微生物活动的了解。本章广泛讨论了混合培养在微生物生物加工方面的最新改进以及在不同领域的多种应用。本章详细介绍了微生物培养的历史、混合培养中的微生物新陈代谢、生物合成途径研究、菌株的分离和鉴定,以及生产和繁殖过程中涉及的微生物相互作用类型。此外,还生动地讨论了评估混合培养性能的参数、大规模生产以及与之相关的挑战。本章还全面总结了微生物群落、单一培养物和混合培养物发酵的特点以及混合培养物中微生物与微生物之间的相互作用。最后,预测了微生物混合培养领域的各种挑战和机遇,这些挑战和机遇对于提高现有的微生物生物工艺知识是必不可少的。
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引用次数: 0
Investigation of Upgrading of Products from Finnoflag Bio-refinery Pilot in Tampere. 坦佩雷 Finnoflag 生物精炼厂试点产品升级调查。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2024_261
Erik Dahlquist, Eva Thorin, Aubrey Shenk, Sebastian Schwede, Chaudhary Awais Salman, Elias Hakalehto

In this study calculation over material and energy balances for bio-refinery product upgrading using membrane filtration (MF, UF, and RO), distillation, and ion-exchanger has been performed. Tests have been made with UF filtration in a pilot plant, separation tests made at lab with ion-exchanger and simulation using ASPEN plus simulator for distillation. Rough economic analysis has been made for the different solutions/techniques.

在这项研究中,利用膜过滤(MF、UF 和 RO)、蒸馏和离子交换器对生物精炼产品升级的材料和能量平衡进行了计算。在试点工厂进行了超滤过滤试验,在实验室进行了离子交换器分离试验,并使用 ASPEN plus 模拟器对蒸馏进行了模拟。对不同的解决方案/技术进行了粗略的经济分析。
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引用次数: 0
Enzymes for Biomass Pretreatment: A Comprehensive Review. 生物质预处理用酶研究综述
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2025_275
Runze Pan, Jingxiang Sun, Fengxue Xin, Wankui Jiang, Min Jiang

Biomass pretreatment plays a crucial role in the conversion of lignocellulosic biowaste materials into valuable biofuels and biochemicals. Enzymatic pretreatment, in particular, has gained significant attention due to its eco-friendly nature and efficiency in breaking down complex biomass structures. This comprehensive review aims to provide an overview of enzymes used in biomass pretreatment, including cellulases, hemicellulases, ligninases, and their applications in enhancing the efficiency of biomass conversion processes. The review also discusses recent advancements, challenges, and future prospects in the field of enzymatic biomass pretreatment.

生物质预处理在将木质纤维素类生物废弃物转化为有价值的生物燃料和生化物质方面起着至关重要的作用。特别是酶预处理,由于其环保性和分解复杂生物质结构的效率而获得了极大的关注。本文综述了生物质预处理中常用的几种酶,包括纤维素酶、半纤维素酶和木质素酶,以及它们在提高生物质转化效率方面的应用。综述还讨论了生物质酶预处理领域的最新进展、挑战和未来前景。
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引用次数: 0
Sustainable Approaches in Viticulture: From Wastes and Side Streams to High-Value Products. 葡萄栽培的可持续发展途径:从废料和侧流到高价值产品。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2025_281
Niël van Wyk, Claudia Borgmeier, Alice Kleber, Esther M Gabor

In the context of climate change, resource scarcity, and a growing global population, sustainable processes and the efficient use of raw materials are imperative. Developing best practices to guide the transition toward a circular economy with minimized waste is essential. Agricultural processes offer inspiration, as they traditionally emphasize the utilization of all parts of cultivated plants. Today, however, there is a pressing need to go beyond basic utilization and focus on the upcycling and valorization of agricultural side streams into high-value products. This chapter examines the wine and grape industry, which generates substantial volumes of side streams, including grape pomace, seeds, stems, and wine lees. In recent years, these material streams have attracted attention for their potential as raw materials rich in bioactive compounds - such as diverse polyphenols, dietary fibers, and organic acids - that can be applied across various sectors, including food, cosmetics, pharmaceuticals, and bioenergy. Key methodologies such as extraction, fermentation, and bioconversion are discussed as pathways to recover and enhance these compounds. Case studies of successful valorization initiatives are presented, demonstrating practical applications of side streams for high-value product creation. An example is the BMBF-funded project "Sustainable Beverages" focusing on the development of fermented drinks made from vine leaves that can be offered as a non-alcoholic alternative to wine. By providing an overview of the current research and technologies in wine waste valorization, this chapter serves as a valuable resource for academics, industry professionals, and policymakers seeking to advance sustainable practices within the wine sector. Ultimately, the upcycling of wine industry residues not only reduces environmental impact but also creates new revenue opportunities, driving innovation and sustainability in the industry.

在气候变化、资源稀缺和全球人口不断增长的背景下,可持续的过程和原材料的有效利用势在必行。制定最佳做法,指导向循环经济过渡,尽量减少浪费,这一点至关重要。农业过程提供了灵感,因为它们传统上强调利用栽培植物的所有部分。然而,今天迫切需要超越基本利用,重点关注农业侧流的升级循环和增值,使其成为高价值产品。本章考察了葡萄酒和葡萄产业,它产生大量的侧流,包括葡萄渣,种子,茎和酒渣。近年来,这些材料流因其作为富含生物活性化合物(如各种多酚、膳食纤维和有机酸)的原料的潜力而受到关注,这些原料可以应用于包括食品、化妆品、制药和生物能源在内的各个领域。关键的方法,如提取,发酵和生物转化的途径进行了讨论,以恢复和增强这些化合物。提出了成功的增值计划的案例研究,展示了高价值产品创造的实际应用。一个例子是bmbf资助的“可持续饮料”项目,重点是开发由葡萄叶制成的发酵饮料,这种饮料可以作为葡萄酒的无酒精替代品。本章概述了当前葡萄酒废弃物增值的研究和技术,为学者、行业专业人士和政策制定者提供了宝贵的资源,以促进葡萄酒行业的可持续发展。最终,葡萄酒行业残留物的升级回收不仅减少了对环境的影响,还创造了新的收入机会,推动了行业的创新和可持续发展。
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引用次数: 0
Correction to: Valorization of Agricultural Residues to Valuable Products: A Circular Bioeconomy Approach. 修正:农业残留物对有价值产品的增值:循环生物经济方法。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2025_286
Stefan Shilev, Ivelina Neykova, Slaveya Petrova
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引用次数: 0
Mixed Strain Fermentation and Metabonomics for Solving Issues of Bioproduction. 混合菌种发酵和代谢经济学解决生物生产问题。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2024_266
Elias Hakalehto, Reino Laatikainen, Jouni Pesola, Erik Dahlquist, Jeremy Everett

In the research of mixed microbial cultures, the numbers and identifications of individual strains are often only partially unknown. Their metabolic capabilities are also not wholly predictable especially if the joint potential is to be understood. In these kinds of situations, deeper insight into the variable microbial communities cannot be obtained by genetic analysis only. Even more critical than the taxonomic aspect is usually the functional metabolic outcome of the mixed flora in question. The results from such studies as NMR (nucleic magnetic resonance) give a precise view from versatile angles into the biochemical activities during the multiparametric metabolic responses of the microflora as a whole.Originally, metabonomics was mainly used for the pathophysiological research of various microbes or for recording the genetic or biochemical modifications of mixed microflora. This approach offers a tool for monitoring changes in microscopic or otherwise confined ecosystems or at multiple locations from which representative specimens are difficult to obtain. It also offers repeatability in various processes. In microbiological studies, the research group can attain overall views on variable populations and their alterations in time and space.

在混合微生物培养物的研究中,单个菌株的数量和鉴定往往是完全或部分未知的。它们的新陈代谢能力也有部分是不可预测的,尤其是在需要了解联合潜力的情况下。在这种情况下,仅靠基因分析无法深入了解多变的微生物群落。通常,比分类学方面更重要的是混合菌群的功能代谢结果。核磁共振(NMR)等研究结果可从多个角度精确观察整个微生物群的多参数代谢反应过程中的生化活动。这种方法为监测微观或其他封闭生态系统或难以获得代表性标本的多个地点的变化提供了一种工具。在微生物学研究中,研究小组可以全面了解可变种群及其在时间和空间上的变化。
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引用次数: 0
Production of Novel Energy Gases in Bioprocesses Using Undefined Mixed Cultures. 利用未定义混合培养物在生物过程中生产新型能源气体。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2024_267
Elias Hakalehto, Ari Jääskeläinen
<p><p>Three phases of matter intermingle in various environments. The phenomena behind these fluctuations provide microbial cultures with beneficial interphase on the borderlines. Correspondingly, a bioreactor broth usually consists of a liquid phase but also contains solid particles, gas bubbles, technical surfaces, and other niches, both on a visible scale and microscopically. The diffusion limitation in the suspension is a remarkable hindrance to the reaction sequence during production. It must be overcome technically. Gas flow into the reactor could serve this purpose, and the outgoing stream or bubbling contains volatile products. The various mixing elements or gas flows should be moderated if shear forces disturb the cell growth, biochemical production, enzymatic activity, or any other crucial biological or physicochemical parameters. The focus is to optimize energy production in the form of liberated gases or their mixtures. Many combustible flows need to get purified, depending on their purpose, for example, for various engines. They provide novel sources for traffic in the air, streets, roads, and waterways, not forgetting space technology dimensions.On the other hand, industrial fuels are often used as mixtures of gases or gases with other substances. This approach may facilitate the utilization of side streams. Also, municipal energy needs can be fulfilled by microbial gases. Microbial mixed cultures could play an essential role in the big picture of sustainable industries, living of people and agriculture, exhibiting an excessive total effect on societies' multifactorial development. The gas phase is key to realizing their potential.Gaseous emissions are inherent part of all forms of microbial metabolism, both aerobic and anoxic ones. Carbon dioxide is liberated both in respiration and fermentation, but the microbiota also binds volatile carbon compounds. CO<sub>2</sub> is also a raw material for plant cultivation, e.g., in greenhouses or in algal pools which both often represent the first steps of food chains. Additionally, they produce biomass to produce energy, biochemicals, nutrition, and soil improvement. Gaseous products of the mixed microbial cultures are valuable sources for energy production as purified gases (e.g., biomethane, biohydrogen) or as mixtures (e.g., bio-hythane, volatiles). These relatively simple molecules also serve as supplies for other hydrocarbons (e.g., methanol). Also, many microbial metabolites serve as fuel sources (e.g., bio-oil) and substrates for further biosynthesis. This versatility of potential technological options in energy-making and for industrial processes could offer huge opportunities for green energies and sustainable industries, transportation, or municipalities. In the agricultural sector, the complete recycling also includes the consideration of gas phase. This aspect provides increasing sources for clean food production. Moreover, the chemoautotrophic bacteria, including the archaeal st
物质的三个阶段在不同的环境中混合。这些波动背后的现象为微生物培养在边界上提供了有益的间期。相应地,生物反应器的肉汤通常由液相组成,但也包含固体颗粒、气泡、技术表面和其他可见尺度和微观尺度上的壁龛。在生产过程中,悬浮液中的扩散限制是影响反应顺序的重要因素。必须在技术上加以克服。进入反应器的气体可以达到这个目的,而流出的气流或冒泡含有挥发性产物。如果剪切力干扰细胞生长、生化生产、酶活性或任何其他关键的生物或物理化学参数,则应调节各种混合元素或气体流动。重点是以释放气体或其混合物的形式优化能源生产。许多可燃气流需要净化,这取决于它们的用途,例如不同的发动机。它们为空中、街道、道路和水路的交通提供了新的来源,同时也不忘记空间技术的维度。另一方面,工业燃料通常作为气体或气体与其他物质的混合物使用。这种方法可以促进侧流的利用。此外,微生物气体可以满足城市能源需求。微生物混合培养可以在可持续工业、生活和农业的大图景中发挥重要作用,对社会的多因素发展表现出过度的总体影响。气相是实现其潜力的关键。气体排放是所有形式的微生物代谢的固有部分,无论是有氧代谢还是缺氧代谢。二氧化碳在呼吸和发酵过程中被释放出来,但微生物群也会结合挥发性碳化合物。二氧化碳也是植物种植的原料,例如在温室或藻池中,这两者都代表了食物链的第一步。此外,它们还生产生物质来生产能源、生物化学、营养和土壤改良。混合微生物培养物的气态产物作为纯化气体(如生物甲烷、生物氢)或混合物(如生物乙烷、挥发物)是能源生产的宝贵来源。这些相对简单的分子也可以作为其他碳氢化合物(如甲醇)的原料。此外,许多微生物代谢物作为燃料来源(例如生物油)和进一步生物合成的底物。能源制造和工业过程中潜在技术选择的多功能性可以为绿色能源和可持续工业、交通或市政提供巨大的机会。在农业部门,完全回收还包括气相的考虑。这方面为清洁食品生产提供了越来越多的来源。此外,包括古细菌菌株在内的趋化自养细菌可以产生供人类使用的新型生物基产品。生物过程通常由生物组分、反应器或容器溶液及其控制和调节手段组成。通过一些项目实例,介绍了这两种技术主流的结合,这两种技术主流应该“共生”以获得最佳效果。这种新颖的方法可能会使工业、农业和市政当局的人类活动进入“零浪费”的境地。与此同时,经济上可行和可持续的原材料来源及其加工的新的全球资源将会出现。在这个新的技术生态系统中,与生物圈的连接将恢复,并使我们的社会保持在健康的基础上,这要归功于微生物和它们的群落。本章介绍了其中的一些可能性。
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引用次数: 0
From Knallgas Bacterium to Promising Biomanufacturing Host: The Evolution of Cupriavidus necator. 从 Knallgas 菌到有前途的生物制造宿主:裸冠突铜绿菌的进化。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2024_269
Daniel Casey, Laura Diaz-Garcia, Mincen Yu, Kang Lan Tee, Tuck Seng Wong

The expanding field of synthetic biology requires diversification of microbial chassis to expedite the transition from a fossil fuel-dependent economy to a sustainable bioeconomy. Relying exclusively on established model organisms such as Escherichia coli and Saccharomyces cerevisiae may not suffice to drive the profound advancements needed in biotechnology. In this context, Cupriavidus necator, an extraordinarily versatile microorganism, has emerged as a potential catalyst for transformative breakthroughs in industrial biomanufacturing. This comprehensive book chapter offers an in-depth review of the remarkable technological progress achieved by C. necator in the past decade, with a specific focus on the fields of molecular biology tools, metabolic engineering, and innovative fermentation strategies. Through this exploration, we aim to shed light on the pivotal role of C. necator in shaping the future of sustainable bioprocessing and bioproduct development.

合成生物学领域不断扩大,要求微生物底盘多样化,以加快从依赖化石燃料的经济向可持续生物经济过渡。仅仅依靠大肠杆菌和酿酒酵母等成熟的模式生物可能不足以推动生物技术所需的巨大进步。在这种情况下,Cupriavidus necator(一种用途极为广泛的微生物)已成为工业生物制造领域实现变革性突破的潜在催化剂。本书的这一章节深入回顾了过去十年中C. necator所取得的显著技术进步,特别关注分子生物学工具、代谢工程和创新发酵策略等领域。通过这一探索,我们旨在阐明 C. necator 在塑造可持续生物加工和生物产品开发的未来方面所发挥的关键作用。
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引用次数: 0
Cable Bacteria and Their Biotechnological Application. 电缆细菌及其生物技术应用。
4区 工程技术 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.1007/10_2025_284
Judith Stiefelmaier

Cable bacteria grow as multicellular filaments several centimetres deep into the sediment of freshwaters and oceans. Hereby, cable bacteria show unique characteristics such as electrogenic sulphur oxidation, extremely high conductivity and ability for CO2 fixation. This offers several possibilities of future applications in biotechnology with an outlook to sustainable processes. So far, research on cable bacteria is mostly concerning metabolism, electron transfer and effect on the surrounding sediment. Cultures are always performed on sediment from the natural habitat and in simple, small-scale reaction tubes, requiring further development for reproducible cultivation with scale-up capabilities. However, based on the known properties of cable bacteria, possible areas of application can already be derived. The use of cable bacteria in bioremediation is a promising approach, as the degradation of hydrocarbons has already been proven. Co-cultivation with plants could open up a further field of application, such as the described reduction of methane emissions from rice fields. Due to the extremely high conductivity of the filaments, cable bacteria are also very promising for incorporation into biodegradable microelectronics. By integrating electrodes into a suitable reactor system, bioelectrochemical processes could be implemented, either with the goal of electron uptake and product formation or for electricity generation.

电缆细菌以多细胞细丝的形式生长在几厘米深的淡水和海洋沉积物中。因此,电缆细菌表现出电致硫氧化、极高导电性和CO2固定能力等独特的特性。这为生物技术的未来应用提供了几种可能性,并展望了可持续的过程。目前,对电缆细菌的研究主要集中在代谢、电子传递和对周围沉积物的影响等方面。培养总是在自然栖息地的沉积物上进行,并在简单的小规模反应管中进行,需要进一步开发具有放大能力的可复制培养。然而,基于已知电缆细菌的特性,可能的应用领域已经可以推导出来。在生物修复中使用电缆细菌是一种很有前途的方法,因为碳氢化合物的降解已经得到证实。与植物共耕可以开辟更广阔的应用领域,例如上述减少稻田甲烷排放的方法。由于线材具有极高的导电性,电缆细菌也非常有希望被纳入生物可降解微电子中。通过将电极集成到一个合适的反应器系统中,生物电化学过程可以实现,要么是电子吸收和产物形成,要么是发电。
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引用次数: 0
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Advances in biochemical engineering/biotechnology
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