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Minimizing Survey Questions for PTSD Prediction Following Acute Trauma. 尽量减少用于预测急性创伤后创伤后应激障碍的调查问题。
Pub Date : 2024-07-01 Epub Date: 2024-07-25 DOI: 10.1007/978-3-031-66538-7_11
Ben Kurzion, Chia-Hao Shih, Hong Xie, Xin Wang, Kevin S Xu

Traumatic experiences have the potential to give rise to post-traumatic stress disorder (PTSD), a debilitating psychiatric condition associated with impairments in both social and occupational functioning. There has been great interest in utilizing machine learning approaches to predict the development of PTSD in trauma patients from clinician assessment or survey-based psychological assessments. However, these assessments require a large number of questions, which is time consuming and not easy to administer. In this paper, we aim to predict PTSD development of patients 3 months post-trauma from multiple survey-based assessments taken within 2 weeks post-trauma. Our objective is to minimize the number of survey questions that patients need to answer while maintaining the prediction accuracy from the full surveys. We formulate this as a feature selection problem and consider 4 different feature selection approaches. We demonstrate that it is possible to achieve up to 72% accuracy for predicting the 3-month PTSD diagnosis from 10 survey questions using a mean decrease in impurity-based feature selector followed by a gradient boosting classifier.

创伤经历有可能导致创伤后应激障碍(PTSD),这是一种使人衰弱的精神疾病,与社会和职业功能受损有关。人们对利用机器学习方法从临床医生的评估或基于调查的心理评估中预测创伤后应激障碍患者的发展非常感兴趣。然而,这些评估需要回答大量问题,既费时又不易操作。在本文中,我们旨在通过创伤后两周内进行的多项基于调查的评估来预测创伤后 3 个月患者的创伤后应激障碍发展情况。我们的目标是尽量减少患者需要回答的调查问题数量,同时保持完整调查的预测准确性。我们将其表述为一个特征选择问题,并考虑了 4 种不同的特征选择方法。我们证明,使用基于不纯度的平均下降特征选择器和梯度提升分类器,从 10 个调查问题中预测 3 个月的创伤后应激障碍诊断的准确率可高达 72%。
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引用次数: 0
Enhancing Hypotension Prediction in Real-time Patient Monitoring Through Deep Learning: A Novel Application of XResNet with Contrastive Learning and Value Attention Mechanisms. 通过深度学习加强实时患者监测中的低血压预测:具有对比学习和价值注意机制的 XResNet 的新应用。
Pub Date : 2024-07-01 Epub Date: 2024-07-25 DOI: 10.1007/978-3-031-66538-7_5
Xiangru Chen, Milos Hauskrecht

The precise prediction of hypotension is vital for advancing preemptive patient care strategies. Traditional machine learning approaches, while instrumental in this field, are hampered by their dependence on structured historical data and manual feature extraction techniques. These methods often fall short of recognizing the intricate patterns present in physiological signals. Addressing this limitation, our study introduces an innovative application of deep learning technologies, utilizing a sophisticated end-to-end architecture grounded in XResNet. This architecture is further enhanced by the integration of contrastive learning and a value attention mechanism, specifically tailored to analyze arterial blood pressure (ABP) waveform signals. Our approach improves the performance of hypotension prediction over the existing state-of-theart ABP model [7]. This research represents a step towards optimizing patient care, embodying the next generation of AI-driven healthcare solutions. Through our findings, we demonstrate the promise of deep learning in overcoming the limitations of conventional prediction models, thereby offering an avenue for enhancing patient outcomes in clinical settings.

精确预测低血压对于推进先发制人的患者护理策略至关重要。传统的机器学习方法虽然在这一领域大有用武之地,但由于依赖于结构化历史数据和人工特征提取技术而受到阻碍。这些方法往往无法识别生理信号中存在的复杂模式。针对这一局限性,我们的研究引入了深度学习技术的创新应用,利用以 XResNet 为基础的复杂端到端架构。通过整合对比学习和价值注意机制,这一架构得到了进一步增强,专门用于分析动脉血压(ABP)波形信号。与现有的先进 ABP 模型相比,我们的方法提高了低血压预测的性能[7]。这项研究向优化患者护理迈出了一步,体现了下一代人工智能驱动的医疗解决方案。通过我们的研究成果,我们展示了深度学习在克服传统预测模型局限性方面的前景,从而为提高临床环境中患者的治疗效果提供了一条途径。
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引用次数: 0
Uncovering hidden therapeutic indications through drug repurposing with graph neural networks and heterogeneous data. 利用图神经网络和异构数据,通过药物再利用发现隐藏的治疗适应症。
Adrián Ayuso-Muñoz, Lucía Prieto-Santamaría, Esther Ugarte-Carro, E. Serrano, A. Rodríguez-González
Drug repurposing has gained the attention of many in the recent years. The practice of repurposing existing drugs for new therapeutic uses helps to simplify the drug discovery process, which in turn reduces the costs and risks that are associated with de novo development. Representing biomedical data in the form of a graph is a simple and effective method to depict the underlying structure of the information. Using deep neural networks in combination with this data represents a promising approach to address drug repurposing. This paper presents BEHOR a more comprehensive version of the REDIRECTION model, which was previously presented. Both versions utilize the DISNET biomedical graph as the primary source of information, providing the model with extensive and intricate data to tackle the drug repurposing challenge. This new version's results for the reported metrics in the RepoDB test are 0.9604 for AUROC and 0.9518 for AUPRC. Additionally, a discussion is provided regarding some of the novel predictions to demonstrate the reliability of the model. The authors believe that BEHOR holds promise for generating drug repurposing hypotheses and could greatly benefit the field.
近年来,药物再利用已经引起了许多人的注意。将现有药物重新用于新的治疗用途的做法有助于简化药物发现过程,从而降低与从头开发相关的成本和风险。以图的形式表示生物医学数据是描述信息底层结构的一种简单有效的方法。将深度神经网络与这些数据相结合,是解决药物再利用问题的一种很有前途的方法。本文提出了BEHOR,这是先前提出的重定向模型的一个更全面的版本。这两个版本都利用DISNET生物医学图作为信息的主要来源,为模型提供广泛而复杂的数据,以解决药物再利用的挑战。对于RepoDB测试中报告的指标,这个新版本的结果是AUROC的0.9604和AUPRC的0.9518。此外,还对一些新的预测进行了讨论,以证明模型的可靠性。作者认为,BEHOR有望产生药物再利用假设,并可能极大地造福该领域。
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引用次数: 0
Learning EKG Diagnostic Models with Hierarchical Class Label Dependencies. 学习具有分层类标签依赖关系的心电图诊断模型。
Junheng Wang, Milos Hauskrecht

Electrocardiogram (EKG/ECG) is a key diagnostic tool to assess patient's cardiac condition and is widely used in clinical applications such as patient monitoring, surgery support, and heart medicine research. With recent advances in machine learning (ML) technology there has been a growing interest in the development of models supporting automatic EKG interpretation and diagnosis based on past EKG data. The problem can be modeled as multi-label classification (MLC), where the objective is to learn a function that maps each EKG reading to a vector of diagnostic class labels reflecting the underlying patient condition at different levels of abstraction. In this paper, we propose and investigate an ML model that considers class-label dependency embedded in the hierarchical organization of EKG diagnoses to improve the EKG classification performance. Our model first transforms the EKG signals into a low-dimensional vector, and after that uses the vector to predict different class labels with the help of the conditional tree structured Bayesian network (CTBN) that is able to capture hierarchical dependencies among class variables. We evaluate our model on the publicly available PTB-XL dataset. Our experiments demonstrate that modeling of hierarchical dependencies among class variables improves the diagnostic model performance under multiple classification performance metrics as compared to classification models that predict each class label independently.

心电图(EKG/ECG)是评估患者心脏状况的重要诊断工具,在患者监护、手术支持、心脏医学研究等临床应用中有着广泛的应用。随着机器学习(ML)技术的最新进展,人们对基于过去的心电图数据开发支持自动心电图解释和诊断的模型越来越感兴趣。该问题可以建模为多标签分类(MLC),其目标是学习一个函数,该函数将每个心电图读数映射到反映不同抽象级别的潜在患者状况的诊断类标签向量。在本文中,我们提出并研究了一种ML模型,该模型考虑了嵌入在EKG诊断层次组织中的类标签依赖关系,以提高EKG分类性能。我们的模型首先将心电图信号转换为低维向量,然后在能够捕获类变量之间的层次依赖关系的条件树结构贝叶斯网络(CTBN)的帮助下,使用该向量来预测不同的类标签。我们在公开可用的PTB-XL数据集上评估我们的模型。我们的实验表明,与独立预测每个类标签的分类模型相比,在多个分类性能指标下,类变量之间的分层依赖关系建模提高了诊断模型的性能。
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引用次数: 0
Predicting Kidney Transplant Survival using Multiple Feature Representations for HLAs. 利用hla的多特征表示预测肾移植生存。
Mohammadreza Nemati, Haonan Zhang, Michael Sloma, Dulat Bekbolsynov, Hong Wang, Stanislaw Stepkowski, Kevin S Xu

Kidney transplantation can significantly enhance living standards for people suffering from end-stage renal disease. A significant factor that affects graft survival time (the time until the transplant fails and the patient requires another transplant) for kidney transplantation is the compatibility of the Human Leukocyte Antigens (HLAs) between the donor and recipient. In this paper, we propose new biologically-relevant feature representations for incorporating HLA information into machine learning-based survival analysis algorithms. We evaluate our proposed HLA feature representations on a database of over 100,000 transplants and find that they improve prediction accuracy by about 1%, modest at the patient level but potentially significant at a societal level. Accurate prediction of survival times can improve transplant survival outcomes, enabling better allocation of donors to recipients and reducing the number of re-transplants due to graft failure with poorly matched donors.

肾移植可以显著提高终末期肾病患者的生活水平。肾移植中影响移植物存活时间(移植失败和患者需要另一次移植的时间)的一个重要因素是供体和受体之间的人类白细胞抗原(hla)的相容性。在本文中,我们提出了将HLA信息纳入基于机器学习的生存分析算法的新的生物学相关特征表示。我们在超过100,000例移植的数据库中评估了我们提出的HLA特征表示,发现它们将预测准确性提高了约1%,在患者水平上是适度的,但在社会水平上可能具有重要意义。准确预测存活时间可以改善移植存活结果,使供体更好地分配给受者,并减少由于供体匹配不良导致移植失败而再次移植的数量。
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引用次数: 0
Identifying Symptom Clusters Through Association Rule Mining. 通过关联规则挖掘识别症状聚类。
Pub Date : 2021-06-01 Epub Date: 2021-06-08 DOI: 10.1007/978-3-030-77211-6_58
Mikayla Biggs, Carla Floricel, Lisanne Van Dijk, Abdallah S R Mohamed, C David Fuller, G Elisabeta Marai, Xinhua Zhang, Guadalupe Canahuate

Cancer patients experience many symptoms throughout their cancer treatment and sometimes suffer from lasting effects post-treatment. Patient-Reported Outcome (PRO) surveys provide a means for monitoring the patient's symptoms during and after treatment. Symptom cluster (SC) research seeks to understand these symptoms and their relationships to define new treatment and disease management methods to improve patient's quality of life. This paper introduces association rule mining (ARM) as a novel alternative for identifying symptom clusters. We compare the results to prior research and find that while some of the SCs are similar, ARM uncovers more nuanced relationships between symptoms such as anchor symptoms that serve as connections between interference and cancer-specific symptoms.

癌症患者在整个癌症治疗过程中会经历许多症状,有时会在治疗后遭受持久的影响。患者报告的结果(PRO)调查提供了一种在治疗期间和治疗后监测患者症状的方法。症状群(SC)研究旨在了解这些症状及其关系,以确定新的治疗和疾病管理方法,以改善患者的生活质量。本文介绍了关联规则挖掘(ARM)作为识别症状聚类的一种新方法。我们将结果与先前的研究进行了比较,发现虽然一些SCs是相似的,但ARM揭示了症状之间更微妙的关系,例如锚定症状,它作为干扰和癌症特异性症状之间的联系。
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引用次数: 1
Neural Clinical Event Sequence Prediction through Personalized Online Adaptive Learning. 基于个性化在线自适应学习的神经临床事件序列预测。
Pub Date : 2021-06-01 Epub Date: 2021-06-08 DOI: 10.1007/978-3-030-77211-6_20
Jeong Min Lee, Milos Hauskrecht

Clinical event sequences consist of thousands of clinical events that represent records of patient care in time. Developing accurate prediction models for such sequences is of a great importance for defining representations of a patient state and for improving patient care. One important challenge of learning a good predictive model of clinical sequences is patient-specific variability. Based on underlying clinical complications, each patient's sequence may consist of different sets of clinical events. However, population-based models learned from such sequences may not accurately predict patient-specific dynamics of event sequences. To address the problem, we develop a new adaptive event sequence prediction framework that learns to adjust its prediction for individual patients through an online model update.

临床事件序列由数千个临床事件组成,这些事件代表了患者护理的时间记录。为这样的序列开发准确的预测模型对于定义患者状态的表示和改善患者护理具有非常重要的意义。学习临床序列的良好预测模型的一个重要挑战是患者特异性变异性。根据潜在的临床并发症,每个患者的序列可能由不同的临床事件集组成。然而,从这些序列中学习的基于人群的模型可能无法准确预测事件序列的患者特异性动力学。为了解决这个问题,我们开发了一种新的自适应事件序列预测框架,该框架通过在线模型更新来学习调整对个别患者的预测。
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引用次数: 3
Detection of Junctional Ectopic Tachycardia by Central Venous Pressure. 中心静脉压检测交界性异位心动过速。
Pub Date : 2021-06-01 Epub Date: 2021-06-08 DOI: 10.1007/978-3-030-77211-6_29
Xin Tan, Yanwan Dai, Ahmed Imtiaz Humayun, Haoze Chen, Genevera I Allen, Parag N Jain

Central venous pressure (CVP) is the blood pressure in the venae cavae, near the right atrium of the heart. This signal waveform is commonly collected in clinical settings, and yet there has been limited discussion of using this data for detecting arrhythmia and other cardiac events. In this paper, we develop a signal processing and feature engineering pipeline for CVP waveform analysis. Through a case study on pediatric junctional ectopic tachycardia (JET), we show that our extracted CVP features reliably detect JET with comparable results to the more commonly used electrocardiogram (ECG) features. This machine learning pipeline can thus improve the clinical diagnosis and ICU monitoring of arrhythmia. It also corroborates and complements the ECG-based diagnosis, especially when the ECG measurements are unavailable or corrupted.

中心静脉压(CVP)是靠近心脏右心房的腔静脉的血压。该信号波形通常在临床环境中收集,但使用该数据检测心律失常和其他心脏事件的讨论有限。在本文中,我们开发了一个用于CVP波形分析的信号处理和特征工程管道。通过对儿童交界性异位心动过速(JET)的病例研究,我们表明我们提取的CVP特征可靠地检测JET,其结果与更常用的心电图(ECG)特征相当。这种机器学习流水线可以提高心律失常的临床诊断和ICU监护。它还证实和补充了基于心电图的诊断,特别是当心电图测量不可用或损坏时。
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引用次数: 0
Improving Prediction of Low-Prior Clinical Events with Simultaneous General Patient-State Representation Learning. 同时一般患者状态表征学习改善低先验临床事件预测。
Pub Date : 2021-06-01 Epub Date: 2021-06-08 DOI: 10.1007/978-3-030-77211-6_57
Matthew Barren, Milos Hauskrecht

Low-prior targets are common among many important clinical events, which introduces the challenge of having enough data to support learning of their predictive models. Many prior works have addressed this problem by first building a general patient-state representation model, and then adapting it to a new low-prior prediction target. In this schema, there is potential for the predictive performance to be hindered by the misalignment between the general patient-state model and the target task. To overcome this challenge, we propose a new method that simultaneously optimizes a shared model through multi-task learning of both the low-prior supervised target and general purpose patient-state representation (GPSR). More specifically, our method improves prediction performance of a low-prior task by jointly optimizing a shared model that combines the loss of the target event and a broad range of generic clinical events. We study the approach in the context of Recurrent Neural Networks (RNNs). Through extensive experiments on multiple clinical event targets using MIMIC-III [8] data, we show that the inclusion of general patient-state representation tasks during model training improves the prediction of individual low-prior targets.

低先验目标在许多重要的临床事件中很常见,这带来了拥有足够数据来支持其预测模型学习的挑战。许多先前的工作已经通过首先构建通用的患者状态表示模型,然后将其适应于新的低先验预测目标来解决这个问题。在这种模式中,一般患者状态模型和目标任务之间的不一致可能会阻碍预测性能。为了克服这一挑战,我们提出了一种新的方法,通过低先验监督目标和通用患者状态表示(GPSR)的多任务学习,同时优化共享模型。更具体地说,我们的方法通过联合优化共享模型来提高低先验任务的预测性能,该共享模型结合了目标事件的损失和广泛的通用临床事件。我们在递归神经网络(RNN)的背景下研究该方法。通过使用MIMIC-III[8]数据对多个临床事件目标进行广泛的实验,我们表明在模型训练过程中包含一般的患者状态表示任务提高了对单个低先验目标的预测。
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引用次数: 0
A Probabilistic Approach to Extract Qualitative Knowledge for Early Prediction of Gestational Diabetes. 一种概率方法提取妊娠期糖尿病早期预测的定性知识。
Pub Date : 2021-06-01 Epub Date: 2021-06-08 DOI: 10.1007/978-3-030-77211-6_59
Athresh Karanam, Alexander L Hayes, Harsha Kokel, David M Haas, Predrag Radivojac, Sriraam Natarajan

Qualitative influence statements are often provided a priori to guide learning; we answer a challenging reverse task and automatically extract them from a learned probabilistic model. We apply our Qualitative Knowledge Extraction method toward early prediction of gestational diabetes on clinical study data. Our empirical results demonstrate that the extracted rules are both interpretable and valid.

定性影响陈述通常是先验的,以指导学习;我们回答了一个具有挑战性的反向任务,并从一个学习概率模型中自动提取它们。我们将我们的定性知识提取方法应用于临床研究数据的早期预测。实证结果表明,所提取的规则具有可解释性和有效性。
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引用次数: 2
期刊
Artificial intelligence in medicine. Conference on Artificial Intelligence in Medicine (2005- )
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