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Neural Clinical Event Sequence Prediction through Personalized Online Adaptive Learning. 基于个性化在线自适应学习的神经临床事件序列预测。
Pub Date : 2021-06-01 Epub Date: 2021-06-08 DOI: 10.1007/978-3-030-77211-6_20
Jeong Min Lee, Milos Hauskrecht

Clinical event sequences consist of thousands of clinical events that represent records of patient care in time. Developing accurate prediction models for such sequences is of a great importance for defining representations of a patient state and for improving patient care. One important challenge of learning a good predictive model of clinical sequences is patient-specific variability. Based on underlying clinical complications, each patient's sequence may consist of different sets of clinical events. However, population-based models learned from such sequences may not accurately predict patient-specific dynamics of event sequences. To address the problem, we develop a new adaptive event sequence prediction framework that learns to adjust its prediction for individual patients through an online model update.

临床事件序列由数千个临床事件组成,这些事件代表了患者护理的时间记录。为这样的序列开发准确的预测模型对于定义患者状态的表示和改善患者护理具有非常重要的意义。学习临床序列的良好预测模型的一个重要挑战是患者特异性变异性。根据潜在的临床并发症,每个患者的序列可能由不同的临床事件集组成。然而,从这些序列中学习的基于人群的模型可能无法准确预测事件序列的患者特异性动力学。为了解决这个问题,我们开发了一种新的自适应事件序列预测框架,该框架通过在线模型更新来学习调整对个别患者的预测。
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引用次数: 3
Detection of Junctional Ectopic Tachycardia by Central Venous Pressure. 中心静脉压检测交界性异位心动过速。
Pub Date : 2021-06-01 Epub Date: 2021-06-08 DOI: 10.1007/978-3-030-77211-6_29
Xin Tan, Yanwan Dai, Ahmed Imtiaz Humayun, Haoze Chen, Genevera I Allen, Parag N Jain

Central venous pressure (CVP) is the blood pressure in the venae cavae, near the right atrium of the heart. This signal waveform is commonly collected in clinical settings, and yet there has been limited discussion of using this data for detecting arrhythmia and other cardiac events. In this paper, we develop a signal processing and feature engineering pipeline for CVP waveform analysis. Through a case study on pediatric junctional ectopic tachycardia (JET), we show that our extracted CVP features reliably detect JET with comparable results to the more commonly used electrocardiogram (ECG) features. This machine learning pipeline can thus improve the clinical diagnosis and ICU monitoring of arrhythmia. It also corroborates and complements the ECG-based diagnosis, especially when the ECG measurements are unavailable or corrupted.

中心静脉压(CVP)是靠近心脏右心房的腔静脉的血压。该信号波形通常在临床环境中收集,但使用该数据检测心律失常和其他心脏事件的讨论有限。在本文中,我们开发了一个用于CVP波形分析的信号处理和特征工程管道。通过对儿童交界性异位心动过速(JET)的病例研究,我们表明我们提取的CVP特征可靠地检测JET,其结果与更常用的心电图(ECG)特征相当。这种机器学习流水线可以提高心律失常的临床诊断和ICU监护。它还证实和补充了基于心电图的诊断,特别是当心电图测量不可用或损坏时。
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引用次数: 0
Improving Prediction of Low-Prior Clinical Events with Simultaneous General Patient-State Representation Learning. 同时一般患者状态表征学习改善低先验临床事件预测。
Pub Date : 2021-06-01 Epub Date: 2021-06-08 DOI: 10.1007/978-3-030-77211-6_57
Matthew Barren, Milos Hauskrecht

Low-prior targets are common among many important clinical events, which introduces the challenge of having enough data to support learning of their predictive models. Many prior works have addressed this problem by first building a general patient-state representation model, and then adapting it to a new low-prior prediction target. In this schema, there is potential for the predictive performance to be hindered by the misalignment between the general patient-state model and the target task. To overcome this challenge, we propose a new method that simultaneously optimizes a shared model through multi-task learning of both the low-prior supervised target and general purpose patient-state representation (GPSR). More specifically, our method improves prediction performance of a low-prior task by jointly optimizing a shared model that combines the loss of the target event and a broad range of generic clinical events. We study the approach in the context of Recurrent Neural Networks (RNNs). Through extensive experiments on multiple clinical event targets using MIMIC-III [8] data, we show that the inclusion of general patient-state representation tasks during model training improves the prediction of individual low-prior targets.

低先验目标在许多重要的临床事件中很常见,这带来了拥有足够数据来支持其预测模型学习的挑战。许多先前的工作已经通过首先构建通用的患者状态表示模型,然后将其适应于新的低先验预测目标来解决这个问题。在这种模式中,一般患者状态模型和目标任务之间的不一致可能会阻碍预测性能。为了克服这一挑战,我们提出了一种新的方法,通过低先验监督目标和通用患者状态表示(GPSR)的多任务学习,同时优化共享模型。更具体地说,我们的方法通过联合优化共享模型来提高低先验任务的预测性能,该共享模型结合了目标事件的损失和广泛的通用临床事件。我们在递归神经网络(RNN)的背景下研究该方法。通过使用MIMIC-III[8]数据对多个临床事件目标进行广泛的实验,我们表明在模型训练过程中包含一般的患者状态表示任务提高了对单个低先验目标的预测。
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引用次数: 0
A Probabilistic Approach to Extract Qualitative Knowledge for Early Prediction of Gestational Diabetes. 一种概率方法提取妊娠期糖尿病早期预测的定性知识。
Pub Date : 2021-06-01 Epub Date: 2021-06-08 DOI: 10.1007/978-3-030-77211-6_59
Athresh Karanam, Alexander L Hayes, Harsha Kokel, David M Haas, Predrag Radivojac, Sriraam Natarajan

Qualitative influence statements are often provided a priori to guide learning; we answer a challenging reverse task and automatically extract them from a learned probabilistic model. We apply our Qualitative Knowledge Extraction method toward early prediction of gestational diabetes on clinical study data. Our empirical results demonstrate that the extracted rules are both interpretable and valid.

定性影响陈述通常是先验的,以指导学习;我们回答了一个具有挑战性的反向任务,并从一个学习概率模型中自动提取它们。我们将我们的定性知识提取方法应用于临床研究数据的早期预测。实证结果表明,所提取的规则具有可解释性和有效性。
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引用次数: 2
Predicting Kidney Transplant Survival using Multiple Feature Representations for HLAs 利用hla的多特征表示预测肾移植生存
Mohammadreza Nemati, Haonan Zhang, Michael Sloma, D. Bekbolsynov, Hong Wang, S. Stepkowski, Kevin S. Xu
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引用次数: 6
Diagnostic Prediction with Sequence-of-sets Representation Learning for Clinical Events. 临床事件的集合序列表示学习诊断预测。
Pub Date : 2020-08-01 Epub Date: 2020-09-26 DOI: 10.1007/978-3-030-59137-3_31
Tianran Zhang, Muhao Chen, Alex A T Bui

Electronic health records (EHRs) contain both ordered and unordered chronologies of clinical events that occur during a patient encounter. However, during data preprocessing steps, many predictive models impose a predefined order on unordered clinical events sets (e.g., alphabetical, natural order from the chart, etc.), which is potentially incompatible with the temporal nature of the sequence and predictive task. To address this issue, we propose DPSS, which seeks to capture each patient's clinical event records as sequences of event sets. For each clinical event set, we assume that the predictive model should be invariant to the order of concurrent events and thus employ a novel permutation sampling mechanism. This paper evaluates the use of this permuted sampling method given different data-driven models for predicting a heart failure (HF) diagnosis in subsequent patient visits. Experimental results using the MIMIC-III dataset show that the permutation sampling mechanism offers improved discriminative power based on the area under the receiver operating curve (AUROC) and precision-recall curve (pr-AUC) metrics as HF diagnosis prediction becomes more robust to different data ordering schemes.

电子健康记录(EHRs)包含患者就诊期间发生的临床事件的有序和无序年表。然而,在数据预处理过程中,许多预测模型对无序的临床事件集施加了预定义的顺序(例如,字母顺序,图表的自然顺序等),这可能与序列和预测任务的时间性质不兼容。为了解决这个问题,我们提出了DPSS,它试图将每个患者的临床事件记录捕获为事件集序列。对于每个临床事件集,我们假设预测模型对并发事件的顺序是不变的,因此采用了一种新的排列抽样机制。本文评估使用这种排列抽样方法给出不同的数据驱动模型预测心衰(HF)诊断在随后的病人就诊。使用MIMIC-III数据集的实验结果表明,排列抽样机制可以提高基于接收者工作曲线下面积(AUROC)和精确召回率曲线(pr-AUC)指标的判别能力,使HF诊断预测对不同数据排序方案具有更强的鲁棒性。
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引用次数: 0
Diagnostic Prediction with Sequence-of-setsRepresentation Learning for Clinical Events 用集合序列表示学习进行临床事件诊断预测
Tianran Zhang, Muhao Chen, A. Bui
Electronic health records (EHRs) contain both ordered and unordered chronologies of clinical events that occur during a patient encounter. However, during data preprocessing steps, many predictive models impose a predefined order on unordered clinical events sets (e.g., alphabetical, natural order from the chart, etc.), which is potentially incompatible with the temporal nature of the sequence and predictive task. To address this issue, we proposeDPSS, which seeks to capture each patient's clinical event records as sequences of event sets. Foreach clinical event set, we assume that the predictive model should be invariant to the order of concurrent events and thus employ a novel permutation sampling mechanism. This paper evaluates the use of this permuted sampling method given different data-driven models for predicting a heart failure (HF) diagnosis in sub-sequent patient visits. Experimental results using the MIMIC-III dataset show that the permutation sampling mechanism offers improved discriminative power based on the area under the receiver operating curve (AUROC) and precision-recall curve (pr-AUC) metrics as HF diagnosis prediction becomes more robust to different data ordering schemes.
电子健康记录(EHRs)包含患者就诊期间发生的临床事件的有序和无序年表。然而,在数据预处理过程中,许多预测模型对无序的临床事件集施加了预定义的顺序(例如,字母顺序,图表的自然顺序等),这可能与序列和预测任务的时间性质不兼容。为了解决这个问题,我们提出了dpss,它试图将每个患者的临床事件记录捕获为事件集序列。对于每个临床事件集,我们假设预测模型对并发事件的顺序是不变的,因此采用了一种新的排列抽样机制。本文评估使用这种排列抽样方法给出不同的数据驱动模型预测心衰(HF)诊断在随后的病人就诊。使用MIMIC-III数据集的实验结果表明,排列抽样机制可以提高基于接收者工作曲线下面积(AUROC)和精确召回率曲线(pr-AUC)指标的判别能力,使HF诊断预测对不同数据排序方案具有更强的鲁棒性。
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引用次数: 22
Recent Context-Aware LSTM for Clinical Event Time-Series Prediction 近期用于临床事件时间序列预测的上下文感知LSTM
Jeong Min Lee, M. Hauskrecht
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引用次数: 13
Predicting patient's diagnoses and diagnostic categories from clinical-events in EHR data. 根据EHR数据中的临床事件预测患者的诊断和诊断类别。
Pub Date : 2019-06-01 Epub Date: 2019-05-30 DOI: 10.1007/978-3-030-21642-9_17
Seyedsalim Malakouti, Milos Hauskrecht

In this paper we develop and study machine learning based models based on latent semantic indexing capable of automatically assigning diagnoses and diagnostic categories to patients based on structured clinical data in their Electronic Health record (EHR). These models can be either used for automatic coding of patient's diagnoses from structured EHR data at the time of discharge, or for supporting dynamic diagnosis and summarization of the patient condition. We study the performance of our diagnostic models on MIMIC-III EHR data.

在本文中,我们开发和研究了基于潜在语义索引的机器学习模型,该模型能够根据患者电子健康记录(EHR)中的结构化临床数据自动将诊断和诊断类别分配给患者。这些模型可以用于出院时根据结构化EHR数据对患者诊断进行自动编码,也可以用于支持患者病情的动态诊断和总结。我们研究了我们的诊断模型在MIMIC-III EHR数据上的性能。
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引用次数: 16
Mining Compact Predictive Pattern Sets Using Classification Model 利用分类模型挖掘紧凑预测模式集
M. Mantovani, Combi Carlo, M. Hauskrecht
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引用次数: 4
期刊
Artificial intelligence in medicine. Conference on Artificial Intelligence in Medicine (2005- )
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