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Transcriptomic Profiling of JEG-3 cells using human leiomyoma derived matrix 利用人平滑肌瘤源性基质对JEG-3细胞进行转录组学分析
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-08-01 DOI: 10.1016/j.bbiosy.2022.100056
Samineh Barmaki , Ahmed Al-Samadi , Katarzyna Leskinen , Wafa Wahbi , Ville Jokinen , Sanna Vuoristo , Tuula Salo , Juha Kere , Satu Wedenoja , Päivi Saavalainen

Oxygen tension varies during placental and fetal development. Although hypoxia drives early trophoblast invasion, low placental oxygen levels during pregnancy show association with pregnancy complications including fetal growth restriction and preeclampsia. JEG-3 cells are often used as a trophoblast model. We studied transcriptional changes of JEG-3 cells on a uterine leiomyoma derived matrix Myogel. This might be the closest condition to the real uterine environment that we can get for an in vitro model. We observed that culturing JEG-3 cells on the leiomyoma matrix leads to strong stimulation of ribosomal pathways, energy metabolism, and ATP production. Furthermore, Myogel improved JEG-3 cell adherence in comparison to tissue culture treated plastic. We also included PDMS microchip hypoxia creation, and observed changes in oxidative phosphorylation, oxygen related genes and several hypoxia genes. Our study highlights the effects of Myogel matrix on growing JEG-3 cells, especially on mitochondria, energy metabolism, and protein synthesis.

在胎盘和胎儿发育过程中,氧张力是不同的。虽然缺氧驱动早期滋养细胞侵袭,但妊娠期间胎盘低氧水平与妊娠并发症(包括胎儿生长受限和先兆子痫)有关。eg -3细胞常被用作滋养细胞模型。我们研究了子宫平滑肌瘤源性基质肌凝胶中JEG-3细胞的转录变化。这可能是我们能得到的最接近真实子宫环境的体外模型。我们观察到,在平滑肌瘤基质上培养JEG-3细胞会导致核糖体途径、能量代谢和ATP产生的强烈刺激。此外,与组织培养处理过的塑料相比,Myogel提高了JEG-3细胞的粘附性。我们还采用PDMS微芯片进行缺氧实验,观察了氧化磷酸化、氧相关基因和几个缺氧基因的变化。我们的研究强调了肌凝胶基质对JEG-3细胞生长的影响,特别是对线粒体、能量代谢和蛋白质合成的影响。
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引用次数: 0
Engineered extracellular vesicles antagonize SARS-CoV-2 infection by inhibiting mTOR signaling 工程细胞外囊泡通过抑制mTOR信号传导拮抗SARS-CoV-2感染
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-06-01 DOI: 10.1016/j.bbiosy.2022.100042
A.G. Ibrahim , A. Ciullo , C. Li , G. Garcia , K. Peck , K. Miyamoto , V. Arumugaswami , E. Marbán

Effective treatment approaches for patients with COVID-19 remain limited and are neither curative nor widely applicable. Activated specialized tissue effector extracellular vesicles (ASTEX) derived from genetically-enhanced skin fibroblasts, exert disease-modifying bioactivity in vivo in models of heart and lung injury. Here we report that ASTEX antagonizes SARS-CoV-2 infection and its pathogenic sequelae. In human lung epithelial cells exposed to SARS-CoV-2, ASTEX is cytoprotective and antiviral. Transcriptomic analysis implicated the mammalian target of rapamycin (mTOR) pathway, as infected cells upregulated mTOR signaling and pre-exposure to ASTEX attenuated it. The implication of mTOR signaling was further confirmed using mTOR inhibition and activation, which increased and decreased viral load, respectively. Dissection of ASTEX cargo identifies miRs including miR-16 as potential inhibitors of mTOR signaling. The findings reveal a novel, dual mechanism of action for ASTEX as a therapeutic candidate for COVID-19, with synergistic antiviral and cytoprotective benefits.

COVID-19患者的有效治疗方法仍然有限,既不能治愈,也不能广泛适用。活化的特化组织效应细胞外囊泡(ASTEX)来源于基因增强的皮肤成纤维细胞,在心脏和肺损伤模型中发挥疾病修饰的生物活性。在这里,我们报道ASTEX拮抗SARS-CoV-2感染及其致病性后遗症。在暴露于SARS-CoV-2的人肺上皮细胞中,ASTEX具有细胞保护和抗病毒作用。转录组学分析暗示了哺乳动物雷帕霉素(mTOR)途径的靶点,因为感染细胞上调mTOR信号,而预先暴露于ASTEX会减弱它。通过mTOR抑制和激活,分别增加和减少病毒载量,进一步证实了mTOR信号的意义。对ASTEX货物的解剖鉴定出包括miR-16在内的miRs是mTOR信号传导的潜在抑制剂。这些发现揭示了ASTEX作为COVID-19候选治疗药物的一种新的双重作用机制,具有协同抗病毒和细胞保护作用。
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引用次数: 6
Tissue engineering and regenerative medicine strategies for the repair of tympanic membrane perforations 鼓膜穿孔修复的组织工程与再生医学策略
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-06-01 DOI: 10.1016/j.bbiosy.2022.100046
Elizabeth Sainsbury , Ronaldo do Amaral , Alexander W. Blayney , Rory McConn Walsh , Fergal J. O'Brien , Cian O'Leary

Despite the high success rate of autologous grafts in tympanic membrane repair, clinical alternatives are required for the closure of unresponsive chronic perforations that can lead to recurring infection and hearing loss. Tissue engineering and regenerative medicine approaches have emerged as another strategy to repair the eardrum, in addition to negating the need for donor tissue harvest and related surgical iatrogenicities. This review highlights the main approaches using biomaterials, growth factors, and cell therapies towards the healing of complex TM perforations. In addition, we discuss the challenges and advances for the development of reliable animal models, which will allow the optimisation and development of novel techniques. Finally, we indicate technologies that are currently used clinically and others that are closer to the market. The advances here discussed on tissue engineering and regenerative medicine strategies applied to the field of TM perforations will allow otologists, surgeons, and researchers to better bring novel technologies to the bedside as well as to develop new ones.

尽管自体移植物在鼓膜修复中的成功率很高,但临床需要替代方法来关闭无反应的慢性穿孔,这些穿孔可能导致反复感染和听力丧失。组织工程和再生医学方法已经成为修复鼓膜的另一种策略,除了不需要获取供体组织和相关的手术医源性。本文综述了利用生物材料、生长因子和细胞疗法治疗复杂TM穿孔的主要方法。此外,我们还讨论了开发可靠动物模型的挑战和进展,这将使新技术的优化和开发成为可能。最后,我们指出了目前临床上使用的技术和其他更接近市场的技术。本文讨论的组织工程和再生医学策略应用于TM穿孔领域的进展将使耳科医生、外科医生和研究人员更好地将新技术带到床边,并开发新的技术。
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引用次数: 4
Vascular tissue engineering from human adipose tissue: fundamental phenotype of its resident microvascular endothelial cells and stromal/stem cells 人脂肪组织的血管组织工程:其常驻微血管内皮细胞和基质/干细胞的基本表型
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-06-01 DOI: 10.1016/j.bbiosy.2022.100049
Jeremy A. Antonyshyn , Meghan J. McFadden , Anthony O. Gramolini , Stefan O.P. Hofer , J. Paul Santerre

Adipose tissue is an abundant, accessible, and uniquely dispensable source of cells for vascular tissue engineering. Despite its intrinsic endothelial cells, considerable effort is directed at deriving endothelium from its resident stem and progenitor cells. Here, we investigate the composition of human adipose tissue and characterize the phenotypes of its constituent cells in order to help ascertain their potential utility for vascular tissue engineering. Unsupervised clustering based on cell-surface protein signatures failed to detect CD45CD31VEGFR2+ endothelial progenitor cells within adipose tissue, but supported further investigation of its resident CD45CD31+ microvascular endothelial cells (HAMVECs) and CD45CD31 stromal/stem cells (ASCs). The endothelial differentiation of ASCs altered their proteome, but it remained distinct from that of primary endothelial cell controls – as well as HAMVECs – regardless of their arterial-venous specification or macrovascular-microvascular origin. Rather, ASCs retained a proteome indicative of a perivascular phenotype, which was supported by their ability to facilitate the capillary morphogenesis of HAMVECs. This study supports the use of HAMVECs for the generation of endothelium. It suggests that the utility of ASCs for vascular tissue engineering lies in their capacity to remodel the extracellular matrix and to function as mural cells.

脂肪组织是血管组织工程中丰富的、可获取的、独特的、不可缺少的细胞来源。尽管内皮细胞是固有的,但在从其常驻干细胞和祖细胞中提取内皮细胞方面仍有相当大的努力。在这里,我们研究了人类脂肪组织的组成,并表征了其组成细胞的表型,以帮助确定它们在血管组织工程中的潜在效用。基于细胞表面蛋白特征的无监督聚类未能检测到脂肪组织中的CD45-CD31 - vegfr2 +内皮祖细胞,但支持对其驻留的CD45-CD31 +微血管内皮细胞(HAMVECs)和CD45-CD31 -基质/干细胞(ASCs)的进一步研究。ASCs的内皮分化改变了它们的蛋白质组,但无论其动脉-静脉规格或大血管-微血管来源如何,它仍然与原代内皮细胞对照以及HAMVECs不同。相反,ASCs保留了一个指示血管周围表型的蛋白质组,这被它们促进HAMVECs毛细血管形态发生的能力所支持。本研究支持HAMVECs用于内皮细胞的生成。这表明ASCs在血管组织工程中的应用在于其重塑细胞外基质的能力和作为壁细胞的功能。
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引用次数: 1
Embracing complexity in biomaterials design 拥抱生物材料设计的复杂性
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-06-01 DOI: 10.1016/j.bbiosy.2022.100039
Helena S. Azevedo , Alvaro Mata

Animate materials, man-made materials behaving like living systems, are attracting enormous interest across a range of sectors, from construction and transport industry to medicine. In this leading opinion article, we propose that embracing complexity in biomaterials design offers untapped opportunities to create biomaterials with innovative life-like properties that extend their capabilities and unleash new paradigms in medical treatment.

有生命的材料,即表现得像生命系统的人造材料,正吸引着从建筑、运输到医药等各个领域的巨大兴趣。在这篇主要的观点文章中,我们提出,在生物材料设计中拥抱复杂性,为创造具有创新类生命特性的生物材料提供了尚未开发的机会,这些生物材料可以扩展其功能,并在医疗领域开创新的范例。
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引用次数: 8
Comparison of human amniotic membrane and collagen nerve wraps around sciatic nerve reverse autografts in a rat model 大鼠坐骨神经逆行自体移植人源羊膜与胶原神经膜的比较
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-06-01 DOI: 10.1016/j.bbiosy.2022.100048
Erin M. Wolfe , Sydney A. Mathis , Natalia de la Olivo Muñoz , Steven A. Ovadia , Zubin J. Panthaki

Human amniotic membrane (hAM) and collagen nerve wraps are biomaterials that have been investigated as therapies for improving outcomes of peripheral nerve regeneration; however, their efficacy has not been compared. The purpose of this study is to compare the efficacy of collagen and human amniotic membrane nerve wraps in a rodent sciatic nerve reverse autograft model. Lewis rats (n = 29) underwent sciatic nerve injury and repair in which a 10-mm gap was bridged with reverse autograft combined with either no nerve wrap (control), collagen nerve wrap or hAM nerve wrap. Behavioral analyses were performed at baseline and 4, 8 and 12 weeks. Electrophysiological studies were conducted at 8, 10 and 12 weeks. Additional outcomes assessed included gastrocnemius muscle weights, nerve adhesions, axonal regeneration and scarring at 12 weeks. Application of both collagen and hAM nerve wraps resulted in improvement of functional and histologic outcomes when compared with controls, with a greater magnitude of improvement for the experimental group treated with hAM nerve wraps. hAM-treated animals had significantly higher numbers of axons compared to control animals (p < 0.05) and significantly less perineural fibrosis than both control and collagen treated nerves (p < 0.05). The ratio of experimental to control gastrocnemius weights was significantly greater in hAM compared to control samples (p < 0.05). We conclude that hAM nerve wraps are a promising biomaterial that is effective for improving outcomes of peripheral nerve regeneration, resulting in superior nerve regeneration and functional recovery compared to collagen nerve wraps and controls.

人羊膜(hAM)和胶原神经包膜是一种生物材料,已被研究作为改善周围神经再生结果的治疗方法;然而,它们的功效还没有被比较过。本研究的目的是比较胶原蛋白和人羊膜神经包裹在啮齿类动物坐骨神经逆行移植模型中的效果。Lewis大鼠(n = 29)接受坐骨神经损伤和修复,用反向自体移植物联合无神经包膜(对照组)、胶原神经包膜或hAM神经包膜桥接10mm间隙。在基线和4、8和12周进行行为分析。在8周、10周和12周进行电生理研究。评估的其他结果包括12周时腓肠肌重量、神经粘连、轴突再生和瘢痕形成。与对照组相比,应用胶原蛋白和火腿神经包膜均可改善功能和组织学结果,实验组用火腿神经包膜治疗的改善程度更大。与对照动物相比,ham处理的动物轴突数量显著增加(p <0.05),神经周围纤维化明显少于对照组和胶原治疗组(p <0.05)。火腿中试验组腓肠肌重量与对照组腓肠肌重量之比显著高于对照组(p <0.05)。我们得出结论,与胶原神经包膜和对照组相比,火腿神经包膜是一种有前途的生物材料,可有效改善周围神经再生的结果,导致上神经再生和功能恢复。
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引用次数: 1
Embracing simplicity in biomaterials design 在生物材料设计中拥抱简单
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-06-01 DOI: 10.1016/j.bbiosy.2022.100043
Matthew J. Webber

Biomaterials offer elegant frameworks to uncover mysteries of biology and vital tools to treat diseased or damaged tissues. Complex natural materials in the living world inspire the design of many engineered biomaterial constructs. Yet, complexity in materials design introduces practical, functional, and economic constraints. These challenges point to some virtues for a simplified approach in the design of biomaterials, especially when intended for clinical impact. But what is simplicity, and how can simple synthetic systems interface and intervene with application-specific complexities in the living world? Herein, both the philosophy and inherent benefits of simplicity in biomaterials design are discussed.

生物材料提供了优雅的框架来揭示生物学的奥秘和治疗病变或受损组织的重要工具。生物世界中复杂的天然材料激发了许多工程生物材料结构的设计。然而,材料设计的复杂性带来了实用性、功能性和经济性的限制。这些挑战指出了简化生物材料设计方法的一些优点,特别是当用于临床影响时。但是什么是简单性,简单的合成系统如何与现实世界中特定于应用程序的复杂性进行交互和干预?本文讨论了生物材料设计的理念和简单性的内在好处。
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引用次数: 2
Bioengineered PLEKHA7 nanodelivery regularly induces behavior alteration and growth retardation of acute myeloid leukemia 生物工程PLEKHA7纳米递送可诱导急性髓系白血病的行为改变和生长迟缓
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-06-01 DOI: 10.1016/j.bbiosy.2022.100045
Sameh A. Mohammed , Yasuhiro Kimura , Yuhki Toku , Yang Ju

Acute myeloid leukemia (AML) is the most lethal leukemia with an extremely poor prognosis and high relapse rates. In leukemogenesis, adhesion abnormalities can readily guide an imbalance between hematopoietic progenitor cells and bone marrow stromal cells, altering the normal hematopoietic bone marrow microenvironment into leukemic transformation that enhances leukemic proliferation. Here, we have firstly studied the PLEKHA7 expression in leukemic cells to assess their growth capability affected by the restoration of PLEKHA7 in the cells. The efficacy of PLEKHA7-loaded cRGD-mediated PEGylated cationic lipid nanoparticles for efficient PLEKHA7 delivery in leukemic cells as well as the effect of PLEKHA7 on the regulated induction of AML behavior and growth alterations were investigated. PLEKHA7 re-expression diminished colony-forming ability and reinforced the incidence of growth retardation without apoptosis in AML cell lines. PLEKHA7 regulated the restoration of cell surface adhesion and integrity during normal homeostasis. Our findings revealed that PLEKHA7 functions as a behavior and growth modulator in AML. To our knowledge, the role of PLEKHA7 in AML had not been studied previously and our data could be exploited for further mechanistic studies and insights into altering human AML behavior and growth.

急性髓系白血病(AML)是最致命的白血病,预后极差,复发率高。在白血病发生过程中,粘附异常容易导致造血祖细胞与骨髓间质细胞失衡,将正常造血骨髓微环境改变为白血病转化,增强白血病增殖。在这里,我们首先研究了PLEKHA7在白血病细胞中的表达,以评估PLEKHA7在细胞中恢复对其生长能力的影响。研究人员研究了装载PLEKHA7的crgd介导的聚乙二醇化阳离子脂质纳米颗粒在白血病细胞中高效递送PLEKHA7的功效,以及PLEKHA7对AML行为和生长改变的调节诱导的作用。PLEKHA7的重新表达降低了AML细胞系的集落形成能力,增加了生长迟缓的发生率,但没有凋亡。PLEKHA7调节正常内稳态中细胞表面粘附和完整性的恢复。我们的研究结果表明PLEKHA7在AML中作为一种行为和生长调节剂起作用。据我们所知,PLEKHA7在AML中的作用以前没有被研究过,我们的数据可以用于进一步的机制研究和改变人类AML行为和生长的见解。
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引用次数: 0
Advancements in nanomedicines for the detection and treatment of diabetic kidney disease 纳米药物在糖尿病肾病检测和治疗中的应用进展
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-06-01 DOI: 10.1016/j.bbiosy.2022.100047
Luke Tillman , Tanveer A. Tabish , Nazila Kamaly , Primrose Moss , Amal El-briri , Christoph Thiemermann , Md Zahidul I. Pranjol , Muhammad M. Yaqoob

In the diabetic kidneys, morbidities such as accelerated ageing, hypertension and hyperglycaemia create a pro-inflammatory microenvironment characterised by extensive fibrogenesis. Radiological techniques are not yet optimised generating inconsistent and non-reproducible data. The gold standard procedure to assess renal fibrosis is kidney biopsy, followed by histopathological assessment. However, this method is risky, invasive, subjective and examines less than 0.01% of kidney tissue resulting in diagnostic errors. As such, less than 10% of patients undergo kidney biopsy, limiting the accuracy of the current diabetic kidney disease (DKD) staging method. Standard treatments suppress the renin-angiotensin system to control hypertension and use of pharmaceuticals aimed at controlling diabetes have shown promise but can cause hypoglycaemia, diuresis and malnutrition as a result of low caloric intake. New approaches to both diagnosis and treatment are required. Nanoparticles (NPs) are an attractive candidate for managing DKD due to their ability to act as theranostic tools that can carry drugs and enhance image contrast. NP-based point-of-care systems can provide physiological information previously considered unattainable and provide control over the rate and location of drug release. Here we discuss the use of nanotechnology in renal disease, its application to both the treatment and diagnosis of DKD. Finally, we propose a new method of NP-based DKD classification that overcomes the current systems limitations.

在糖尿病肾脏中,诸如加速衰老、高血压和高血糖等疾病创造了以广泛纤维化为特征的促炎微环境。放射学技术尚未优化,产生不一致和不可重复的数据。评估肾纤维化的金标准程序是肾活检,然后进行组织病理学评估。然而,这种方法是有风险的,侵入性的,主观的,检查不到0.01%的肾组织,导致诊断错误。因此,只有不到10%的患者进行了肾活检,限制了当前糖尿病肾病(DKD)分期方法的准确性。通过抑制肾素-血管紧张素系统来控制高血压的标准治疗和使用旨在控制糖尿病的药物已经显示出希望,但由于低热量摄入可能导致低血糖、利尿和营养不良。需要新的诊断和治疗方法。纳米颗粒(NPs)是治疗DKD的一个有吸引力的候选者,因为它们能够作为携带药物和增强图像对比度的治疗工具。基于np的即时护理系统可以提供以前认为无法获得的生理信息,并提供对药物释放速度和位置的控制。在这里,我们讨论纳米技术在肾脏疾病中的应用,它在DKD的治疗和诊断中的应用。最后,我们提出了一种新的基于np的DKD分类方法,克服了当前系统的局限性。
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引用次数: 2
Application of bioengineered elastin-like polypeptide-based system for targeted gene delivery in tumor cells 基于生物工程弹性蛋白样多肽的肿瘤细胞靶向基因传递系统的应用
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2022-06-01 DOI: 10.1016/j.bbiosy.2022.100050
Aena Yi , Dahye Sim , Seon-Boon Lee, Vijaya Sarangthem, Rang-Woon Park

Successful gene delivery depends on the entry of negatively charged DNAs and oligonucleotides across the various barriers of the tumor cells and localization into the nucleus for its transcription and protein translation. Here, we have reported a thermal responsive self-assemble and highly biocompatible, targeted ELP-based gene delivery system. These systems consist of cell-penetrating peptides, Tat and single or multiple repeats of IL-4 receptor targeting peptide AP-1 along the backbone of ELP. Cell-penetrating peptides were introduced for nuclear localization of genes of interest, AP-1 for targeting IL-4R highly expressed tumor cells and ELP for stable condensation favoring protection of nucleic acids. The designed multidomain fusion ELPs referred to as Tat-ELP, Tat-A1E28 and Tat-A4V48 were employed to generate formulation with pEGFP-N1. Profound formulation of stable complexes occurred at different molar ratios owing to electrostatic interactions of positively charged amino acids in polymers with negatively charged nucleic acids. Among the complexes, Tat-A4V48 containing four copies of AP-1 showed maximum complexation with pEGFP-N1 in lower molar ratio. The polymer-pEGFP complexes were further analyzed for its transfection efficiency in different cancer cell lines. Both the targeted polymers, Tat-A4V48 and Tat-A1E28 upon transfection displayed significant EGFP-expression with low toxicity in different cancer cells. Therefore, both Tat-A4V48 and Tat-A1E28 can be considered as novel transfection system for successful gene delivery with therapeutic applications.

成功的基因传递取决于带负电荷的dna和寡核苷酸进入肿瘤细胞的各种屏障,并定位到细胞核中进行转录和蛋白质翻译。在这里,我们报道了一个热响应自组装和高度生物相容性,靶向elp为基础的基因传递系统。这些系统由细胞穿透肽、Tat和沿ELP主干的IL-4受体靶向肽AP-1的单次或多次重复组成。细胞穿透肽用于定位目标基因的核定位,AP-1用于靶向IL-4R高表达的肿瘤细胞,ELP用于稳定缩合,有利于核酸的保护。设计的多域融合elp分别为Tat-ELP、Tat-A1E28和Tat-A4V48,利用pEGFP-N1生成配方。由于聚合物中带正电的氨基酸与带负电的核酸的静电相互作用,在不同的摩尔比下发生了稳定配合物的深刻形成。在这些配合物中,含有4个AP-1拷贝的Tat-A4V48在较低的摩尔比下与pEGFP-N1的络合作用最大。进一步分析了聚合物- pegfp复合物在不同癌细胞系中的转染效率。转染后的靶向聚合物Tat-A4V48和Tat-A1E28在不同的癌细胞中均表现出显著的egfp表达,且毒性较低。因此,Tat-A4V48和Tat-A1E28都可以被认为是一种新的转染系统,可以成功地将基因传递到治疗中。
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引用次数: 1
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