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Computational diffusion MRI : MICCAI Workshop最新文献

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Direct Reconstruction of Crossing Muscle Fibers in the Human Tongue Using a Deep Neural Network 用深度神经网络直接重建人类舌头的交叉肌纤维
Pub Date : 2021-01-01 DOI: 10.1007/978-3-030-73018-5_6
Muhan Shao, A. Carass, Arnold D. Gomez, J. Zhuo, Xiao Liang, M. Stone, Jerry L Prince
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引用次数: 2
Diffusion MRI Fiber Orientation Distribution Function Estimation Using Voxel-Wise Spherical U-Net 基于体素方向球形U-Net的扩散MRI纤维取向分布函数估计
Pub Date : 2021-01-01 DOI: 10.1007/978-3-030-73018-5_8
Sara Sedlar, T. Papadopoulo, R. Deriche, Samuel Deslauriers-Gauthier
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引用次数: 18
A Signal Peak Separation Index for Axisymmetric B-Tensor Encoding 轴对称b张量编码的信号峰值分离指标
Pub Date : 2020-10-16 DOI: 10.1007/978-3-030-73018-5_3
Gaëtan Rensonnet, Jonathan Rafael-Patino, B. Macq, J. Thiran, G. Girard, Marco Pizzolato Signal Processing Lab, 'Ecole polytechnique f'ed'erale de Lausanne, Lausanne, Switzerland., Icteam Institute, Universit'e catholique de Louvain, Louvain-la-Neuve, Belgium, Center for Computational Imaging, Radiology Department, C. Vaudois, University of Lausanne, D. Mathematics, Computer Science, T. Denmark, Kongens Lyngby, Denmark.
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引用次数: 6
Q-Space Quantitative Diffusion MRI Measures Using a Stretched-Exponential Representation 使用扩展指数表示的q空间定量扩散MRI测量
Pub Date : 2020-09-15 DOI: 10.1007/978-3-030-73018-5_10
Tomasz Pieciak, M. Afzali, Fabian Bogusz, S. Aja‐Fernández, Derek K. Jones
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引用次数: 0
Investigation of Changes in Anomalous Diffusion Parameters in a Mouse Model of Brain Tumour 小鼠脑肿瘤模型中异常扩散参数变化的研究
Pub Date : 2020-01-01 DOI: 10.1007/978-3-030-52893-5_14
Qianqian Yang, S. Puttick, Zara C. Bruce, B. Day, V. Vegh
{"title":"Investigation of Changes in Anomalous Diffusion Parameters in a Mouse Model of Brain Tumour","authors":"Qianqian Yang, S. Puttick, Zara C. Bruce, B. Day, V. Vegh","doi":"10.1007/978-3-030-52893-5_14","DOIUrl":"https://doi.org/10.1007/978-3-030-52893-5_14","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"24 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81251122","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
A framework to construct a longitudinal DW-MRI infant atlas based on mixed effects modeling of dODF coefficients. 基于dODF系数混合效应建模的纵向DW-MRI婴儿图谱构建框架。
Pub Date : 2020-01-01 DOI: 10.1007/978-3-030-52893-5_13
Heejong Kim, Martin Styner, Joseph Piven, Guido Gerig

Building of atlases plays a crucial role in the analysis of brain images. In scenarios where early growth, aging or disease trajectories are of key importance, longitudinal atlases become necessary as references, most often created from cross-sectional data. New opportunities will be offered by creating longitudinal brain atlases from longitudinal subject-specific image data, where explicit modeling of subject's variability in slope and intercept leads to a more robust estimation of average trajectories but also to estimates of confidence bounds. This work focuses on a framework to build a continuous 4D atlas from longitudinal high angular resolution diffusion images (HARDI) where, unlike atlases of derived scalar diffusion indices such as FA, statistics on dODFs is preserved. Multi-scalar images obtained from DW images are used for geometric alignment, and linear mixed-effects modeling from longitudinal diffusion orientation distribution functions (dODF) leads to estimation of continuous dODF changes. The proposed method is applied to a longitudinal dataset of HARDI images from healthy developing infants in the age range of 3 to 36 months. Verification of mixed-effects modeling is obtained by voxel-wise goodness of fit calculations. To demonstrate the potential of our method, we display changes of longitudinal atlas using dODF and derived generalized fractional anisotropy (GFA) of dODF. We also investigate white matter maturation patterns in genu, body, and splenium of the corpus callosum. The framework can be used to build an average dODF atlas from HARDI data and to derive subject-specific and population-based longitudinal change trajectories.

地图集的建立在脑图像分析中起着至关重要的作用。在早期生长、衰老或疾病轨迹至关重要的情况下,纵向地图集作为参考是必要的,通常是根据横断面数据创建的。从纵向受试者特定图像数据创建纵向脑地图集将提供新的机会,其中受试者斜率和截距变异性的明确建模导致对平均轨迹的更稳健估计,但也导致对置信界限的估计。这项工作的重点是建立一个框架,从纵向高角分辨率扩散图像(HARDI)建立一个连续的四维地图集,与派生的标量扩散指数(如FA)的地图集不同,dodf的统计数据被保留。利用DW图像获得的多标量图像进行几何对齐,利用纵向扩散方向分布函数(dODF)进行线性混合效应建模,估计连续dODF变化。所提出的方法应用于3至36个月的健康发育婴儿的HARDI图像纵向数据集。混合效果建模的验证是通过体素拟合优度计算获得的。为了证明该方法的潜力,我们利用dODF显示了纵向图谱的变化,并推导了dODF的广义分数各向异性(GFA)。我们还研究了膝、体和胼胝体脾的白质成熟模式。该框架可用于根据HARDI数据构建平均dODF图谱,并得出特定主题和基于人群的纵向变化轨迹。
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引用次数: 4
Acquiring and Predicting Multidimensional Diffusion (MUDI) Data: An Open Challenge 多维扩散(MUDI)数据的获取和预测:一个开放的挑战
Pub Date : 2020-01-01 DOI: 10.1007/978-3-030-52893-5_17
M. Pizzolato, M. Palombo, E. Bonet-Carne, W. ChantalM., Tax., Francesco Grussu, A. Ianuş, Fabian Bogusz, Tomasz, Pieciak, L. Ning, H. Larochelle, M. Descoteaux, Maxime, V. Chamberland, Stefano B. Blumberg, T. Mertzanidou, C. Daniel, Alexander, M. Afzali, S. Aja‐Fernández, Derek K. Jones, C. Westin, Y. Rathi, S. Baete, Lucilio, Cordero-Grande, T.R. Ladner, P. Slator, J. Hajnal, J. Thiran, A. Price, F. Sepehrband, Fan, Zhang, J. Hutter
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引用次数: 14
A Network-Based Analysis of the Preterm Adolescent Brain Using PCA and Graph Theory
Pub Date : 2020-01-01 DOI: 10.1007/978-3-030-52893-5_15
Hassna Irzan, Michael Hütel, Carla Semedo, H. O’Reilly, Manisha Sahota, S. Ourselin, N. Marlow, A. Melbourne
{"title":"A Network-Based Analysis of the Preterm Adolescent Brain Using PCA and Graph Theory","authors":"Hassna Irzan, Michael Hütel, Carla Semedo, H. O’Reilly, Manisha Sahota, S. Ourselin, N. Marlow, A. Melbourne","doi":"10.1007/978-3-030-52893-5_15","DOIUrl":"https://doi.org/10.1007/978-3-030-52893-5_15","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"104 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88142664","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
DWI Simulation-Assisted Machine Learning Models for Microstructure Estimation 微观结构估计的DWI模拟辅助机器学习模型
Pub Date : 2020-01-01 DOI: 10.1007/978-3-030-52893-5_11
Jonathan Rafael-Patino, Thomas Yu, V. Delvigne, M. Barakovic, M. Pizzolato, G. Girard, Derek K. Jones, Erick Jorge Canales-Rodríguez, J. Thiran
{"title":"DWI Simulation-Assisted Machine Learning Models for Microstructure Estimation","authors":"Jonathan Rafael-Patino, Thomas Yu, V. Delvigne, M. Barakovic, M. Pizzolato, G. Girard, Derek K. Jones, Erick Jorge Canales-Rodríguez, J. Thiran","doi":"10.1007/978-3-030-52893-5_11","DOIUrl":"https://doi.org/10.1007/978-3-030-52893-5_11","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"88 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72984276","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Inference of an Extended Short Fiber Bundle Atlas Using Sulcus-Based Constraints for a Diffeomorphic Inter-subject Alignment 基于沟槽约束的扩展短纤维束图谱的微分同构比对推断
Pub Date : 2019-10-13 DOI: 10.1007/978-3-030-05831-9_25
Nicole Labra Avila, J. Lebenberg, D. Rivière, G. Auzias, C. Fischer, F. Poupon, P. Guevara, C. Poupon, J. F. Mangin
{"title":"Inference of an Extended Short Fiber Bundle Atlas Using Sulcus-Based Constraints for a Diffeomorphic Inter-subject Alignment","authors":"Nicole Labra Avila, J. Lebenberg, D. Rivière, G. Auzias, C. Fischer, F. Poupon, P. Guevara, C. Poupon, J. F. Mangin","doi":"10.1007/978-3-030-05831-9_25","DOIUrl":"https://doi.org/10.1007/978-3-030-05831-9_25","url":null,"abstract":"","PeriodicalId":72661,"journal":{"name":"Computational diffusion MRI : MICCAI Workshop","volume":"8 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2019-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"78362717","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
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Computational diffusion MRI : MICCAI Workshop
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