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A simple implantation method for flexible, multisite microelectrodes into rat brains. 一种简单的将柔性多位点微电极植入大鼠大脑的方法。
Pub Date : 2013-07-24 eCollection Date: 2013-01-01 DOI: 10.3389/fneng.2013.00006
Anja Richter, Yijing Xie, Anett Schumacher, Susanne Löffler, Robert D Kirch, Jaafar Al-Hasani, Daniel H Rapoport, Charli Kruse, Andreas Moser, Volker Tronnier, Sandra Danner, Ulrich G Hofmann

A long term functional and reliable coupling between neural tissue and implanted microelectrodes is the key issue in acquiring neural electrophysiological signals or therapeutically excite neural tissue. The currently often used rigid micro-electrodes are thought to cause a severe foreign body reaction resulting in a thick glial scar and consequently a poor tissue-electrode coupling in the chronic phase. We hypothesize, that this adverse effect might be remedied by probes compliant to the soft brain tissue, i.e., replacing rigid electrodes by flexible ones. Unfortunately, this flexibility comes at the price of a low stiffness, which makes targeted low trauma implantation very challenging. In this study, we demonstrate an adaptable and simple method to implant extremely flexible microprobes even to deep areas of rat's brain. Implantation of flexible probes is achieved by rod supported stereotactic insertion fostered by a hydrogel (2% agarose in PBS) cushion on the exposed skull. We were thus able to implant very flexible micro-probes in 70 rats as deep as the rodent's subthalamic nucleus. This work describes in detail the procedures and steps needed for minimal invasive, but reliable implantation of flexible probes.

神经组织与植入的微电极之间长期功能可靠的耦合是获取神经电生理信号或治疗性兴奋神经组织的关键问题。目前经常使用的刚性微电极被认为会引起严重的异物反应,导致较厚的胶质瘢痕,从而导致慢性期组织-电极耦合不良。我们假设,这种不利影响可能会通过适应软脑组织的探针来弥补,即用柔性电极代替刚性电极。不幸的是,这种灵活性是以低刚度为代价的,这使得有针对性的低创伤植入非常具有挑战性。在这项研究中,我们展示了一种适应性强且简单的方法,可以将非常灵活的微探针植入大鼠的大脑深处。柔性探针的植入是通过在暴露的颅骨上用水凝胶(2%琼脂糖PBS)垫培养的杆支撑立体定向插入来实现的。因此,我们能够在70只大鼠体内植入非常灵活的微型探针,其深度与啮齿动物的丘脑下核一样深。这项工作详细描述了微创但可靠的柔性探针植入所需的程序和步骤。
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引用次数: 47
Optimal number of stimulation contacts for coordinated reset neuromodulation. 协调复位神经调节的最佳刺激接触数。
Pub Date : 2013-07-22 eCollection Date: 2013-01-01 DOI: 10.3389/fneng.2013.00005
Borys Lysyansky, Oleksandr V Popovych, Peter A Tass

In this computational study we investigate coordinated reset (CR) neuromodulation designed for an effective control of synchronization by multi-site stimulation of neuronal target populations. This method was suggested to effectively counteract pathological neuronal synchrony characteristic for several neurological disorders. We study how many stimulation sites are required for optimal CR-induced desynchronization. We found that a moderate increase of the number of stimulation sites may significantly prolong the post-stimulation desynchronized transient after the stimulation is completely switched off. This can, in turn, reduce the amount of the administered stimulation current for the intermittent ON-OFF CR stimulation protocol, where time intervals with stimulation ON are recurrently followed by time intervals with stimulation OFF. In addition, we found that the optimal number of stimulation sites essentially depends on how strongly the administered current decays within the neuronal tissue with increasing distance from the stimulation site. In particular, for a broad spatial stimulation profile, i.e., for a weak spatial decay rate of the stimulation current, CR stimulation can optimally be delivered via a small number of stimulation sites. Our findings may contribute to an optimization of therapeutic applications of CR neuromodulation.

在这项计算研究中,我们研究了协调重置(CR)神经调节,该神经调节旨在通过多位点刺激神经元目标群来有效控制同步。这种方法被认为可以有效地抵消几种神经系统疾病的病理性神经元同步性特征。我们研究了需要多少刺激位点才能达到最佳的cr诱导的去同步。我们发现,适度增加刺激位点的数量可以显著延长刺激完全关闭后的刺激后非同步瞬态。反过来,这可以减少间歇开-关CR刺激方案的刺激电流,即在刺激开启的时间间隔之后周期性地关闭刺激的时间间隔。此外,我们发现刺激点的最佳数量本质上取决于随着距离刺激点的增加,施加的电流在神经元组织内衰减的强度。特别是,对于较宽的空间增产剖面,即对于较弱的增产电流空间衰减率,CR增产可以通过少数增产点进行优化。我们的发现可能有助于优化CR神经调节的治疗应用。
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引用次数: 18
Analysis of fractal electrodes for efficient neural stimulation. 分形电极的高效神经刺激分析。
Pub Date : 2013-07-12 eCollection Date: 2013-01-01 DOI: 10.3389/fneng.2013.00003
Laleh Golestanirad, Behzad Elahi, Alberto Molina, Juan R Mosig, Claudio Pollo, Robert Chen, Simon J Graham

Planar electrodes are increasingly used in therapeutic neural stimulation techniques such as functional electrical stimulation, epidural spinal cord stimulation (ESCS), and cortical stimulation. Recently, optimized electrode geometries have been shown to increase the efficiency of neural stimulation by increasing the variation of current density on the electrode surface. In the present work, a new family of modified fractal electrode geometries is developed to enhance the efficiency of neural stimulation. It is shown that a promising approach in increasing the neural activation function is to increase the "edginess" of the electrode surface, a concept that is explained and quantified by fractal mathematics. Rigorous finite element simulations were performed to compute electric potential produced by proposed modified fractal geometries. The activation of 256 model axons positioned around the electrodes was then quantified, showing that modified fractal geometries required a 22% less input power while maintaining the same level of neural activation. Preliminary in vivo experiments investigating muscle evoked potentials due to median nerve stimulation showed encouraging results, supporting the feasibility of increasing neural stimulation efficiency using modified fractal geometries.

平面电极越来越多地用于治疗性神经刺激技术,如功能性电刺激、硬膜外脊髓刺激(ESCS)和皮质刺激。最近,优化的电极几何形状已被证明可以通过增加电极表面电流密度的变化来提高神经刺激的效率。本文提出了一种新的改进的分形电极几何形状,以提高神经刺激的效率。研究表明,增加电极表面的“棱角”是增加神经激活函数的一种很有前途的方法,这一概念可以用分形数学来解释和量化。采用严格的有限元模拟计算改进的分形几何所产生的电势。然后对电极周围256个模型轴突的激活进行了量化,结果表明,在保持相同的神经激活水平的情况下,改进的分形几何图形所需的输入功率减少了22%。研究正中神经刺激引起的肌肉诱发电位的初步体内实验显示了令人鼓舞的结果,支持使用改进的分形几何来提高神经刺激效率的可行性。
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引用次数: 33
A positive feedback cell signaling nucleation model of astrocyte dynamics. 星形胶质细胞动力学的正反馈细胞信号成核模型。
Pub Date : 2013-07-10 eCollection Date: 2013-01-01 DOI: 10.3389/fneng.2013.00004
Christopher L Macdonald, Gabriel A Silva

We constructed a model of calcium signaling in astrocyte neural glial cells that incorporates a positive feedback nucleation mechanism, whereby small microdomain increases in local calcium can stochastically produce global cellular and intercellular network scale dynamics. The model is able to simultaneously capture dynamic spatial and temporal heterogeneities associated with intracellular calcium transients in individual cells and intercellular calcium waves (ICW) in spatially realistic networks of astrocytes, i.e., networks where the positions of cells were taken from real in vitro experimental data of spontaneously forming sparse networks, as opposed to artificially constructed grid networks or other non-realistic geometries. This is the first work we are aware of where an intracellular model of calcium signaling that reproduces intracellular dynamics inherently accounts for intercellular network dynamics. These results suggest that a nucleation type mechanism should be further investigated experimentally in order to test its contribution to calcium signaling in astrocytes and in other cells more broadly. It may also be of interest in engineered neuromimetic network systems that attempt to emulate biological signaling and information processing properties in synthetic hardwired neuromorphometric circuits or coded algorithms.

我们构建了星形胶质细胞中钙信号传导的模型,该模型包含正反馈成核机制,即局部钙的小微域增加可以随机产生全局细胞和细胞间网络规模的动态。该模型能够同时捕获与星形胶质细胞空间现实网络中单个细胞内钙瞬态和细胞间钙波(ICW)相关的动态空间和时间异质性,即,网络中细胞的位置取自自发形成稀疏网络的真实体外实验数据,而不是人工构建的网格网络或其他非现实几何形状。这是我们所知道的第一个细胞内钙信号模型再现细胞内动力学固有地解释细胞间网络动力学的工作。这些结果表明,为了在星形胶质细胞和其他细胞中更广泛地测试其对钙信号传导的贡献,应进一步研究成核型机制。它也可能对工程神经模拟网络系统感兴趣,这些系统试图模拟合成硬连线神经形态测量电路或编码算法中的生物信号和信息处理特性。
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引用次数: 4
Microelectrode arrays in combination with in vitro models of spinal cord injury as tools to investigate pathological changes in network activity: facts and promises. 微电极阵列结合脊髓损伤体外模型作为研究神经网络活动病理变化的工具:事实和前景。
Pub Date : 2013-03-04 eCollection Date: 2013-01-01 DOI: 10.3389/fneng.2013.00002
Miranda Mladinic, Andrea Nistri

Microelectrode arrays (MEAs) represent an important tool to study the basic characteristics of spinal networks that control locomotion in physiological conditions. Fundamental properties of this neuronal rhythmicity like burst origin, propagation, coordination, and resilience can, thus, be investigated at multiple sites within a certain spinal topography and neighboring circuits. A novel challenge will be to apply this technology to unveil the mechanisms underlying pathological processes evoked by spinal cord injury (SCI). To achieve this goal, it is necessary to fully identify spinal networks that make up the locomotor central pattern generator (CPG) and to understand their operational rules. In this review, the use of isolated spinal cord preparations from rodents, or organotypic spinal slice cultures is discussed to study rhythmic activity. In particular, this review surveys our recently developed in vitro models of SCI by evoking excitotoxic (or even hypoxic/dysmetabolic) damage to spinal networks and assessing the impact on rhythmic activity and cell survival. These pathological processes which evolve via different cell death mechanisms are discussed as a paradigm to apply MEA recording for detailed mapping of the functional damage and its time-dependent evolution.

微电极阵列(MEAs)是研究生理状态下控制运动的脊髓网络基本特征的重要工具。这种神经元节律性的基本特性,如爆发的起源、传播、协调和恢复力,因此可以在特定脊髓地形和邻近电路的多个位点进行研究。应用这项技术揭示脊髓损伤(SCI)引起的病理过程的机制将是一个新的挑战。为了实现这一目标,有必要充分识别构成运动中枢模式发生器(CPG)的脊髓网络并了解其操作规则。在这篇综述中,我们讨论了使用从啮齿动物身上分离的脊髓制剂或器官型脊髓片培养来研究节律性活动。特别地,本文综述了我们最近开发的脊髓损伤体外模型,通过激发兴奋毒性(甚至缺氧/代谢异常)损伤脊髓网络,并评估其对节律活动和细胞存活的影响。这些通过不同细胞死亡机制进化的病理过程被讨论为应用MEA记录详细绘制功能损伤及其随时间变化的演变的范例。
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引用次数: 8
Frequency and time-frequency analysis of intraoperative ECoG during awake brain stimulation. 清醒脑刺激期间术中ECoG的频率和时间-频率分析。
Pub Date : 2013-02-25 eCollection Date: 2013-01-01 DOI: 10.3389/fneng.2013.00001
Emanuela Formaggio, Silvia F Storti, Vincenzo Tramontano, Agnese Casarin, Alessandra Bertoldo, Antonio Fiaschi, Andrea Talacchi, Francesco Sala, Gianna M Toffolo, Paolo Manganotti

Electrocortical stimulation remains the standard for functional brain mapping of eloquent areas to prevent postoperative functional deficits. The aim of this study was to investigate whether the short-train technique (monopolar stimulation) and Penfield's technique (bipolar stimulation) would induce different effects on brain oscillatory activity in awake patients, as quantified by electrocorticography (ECoG). The study population was seven patients undergoing brain tumor surgery. Intraoperative bipolar and monopolar electrical stimulation for cortical mapping was performed during awake surgery. ECoG was recorded using 1 × 8 electrode strip. Spectral estimation was calculated using a parametric approach based on an autoregressive model. Wavelet-based time-frequency analysis was then applied to evaluate the temporal evolution of brain oscillatory activity. Both monopolar and bipolar stimulation produced an increment in delta and a decrease in beta powers for the motor and the sensory channels. These phenomena lasted about 4 s. Comparison between monopolar and bipolar stimulation showed no significant difference in brain activity. Given the importance of quantitative signal analysis for evaluating response accuracy, ECoG recording during electrical stimulation is necessary to characterize the dynamic processes underlying changes in cortical responses in vivo. This study is a preliminary approach to the quantitative analysis of post-stimulation ECoG signals.

皮层电刺激仍然是大脑功能定位有说服力区域的标准,以防止术后功能缺陷。本研究的目的是研究短训练技术(单极刺激)和Penfield技术(双极刺激)是否会对清醒患者的大脑振荡活动产生不同的影响,如皮层电图(ECoG)所量化的。研究人群为7名接受脑肿瘤手术的患者。术中双极和单极电刺激用于皮层标测是在清醒手术期间进行的。使用1×8电极条记录ECoG。使用基于自回归模型的参数方法计算谱估计。然后应用基于小波的时频分析来评估大脑振荡活动的时间演变。单极和双极刺激都会使运动和感觉通道的δ功率增加,β功率减少。这些现象持续了大约4秒。单极和双极刺激之间的比较表明,大脑活动没有显著差异。鉴于定量信号分析对评估反应准确性的重要性,电刺激期间的ECoG记录对于表征体内皮层反应变化的动态过程是必要的。本研究是对刺激后ECoG信号进行定量分析的初步方法。
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引用次数: 27
Network architecture underlying maximal separation of neuronal representations. 神经元表征最大分离的网络架构。
Pub Date : 2013-01-03 eCollection Date: 2012-01-01 DOI: 10.3389/fneng.2012.00019
Ron A Jortner

One of the most basic and general tasks faced by all nervous systems is extracting relevant information from the organism's surrounding world. While physical signals available to sensory systems are often continuous, variable, overlapping, and noisy, high-level neuronal representations used for decision-making tend to be discrete, specific, invariant, and highly separable. This study addresses the question of how neuronal specificity is generated. Inspired by experimental findings on network architecture in the olfactory system of the locust, I construct a highly simplified theoretical framework which allows for analytic solution of its key properties. For generalized feed-forward systems, I show that an intermediate range of connectivity values between source- and target-populations leads to a combinatorial explosion of wiring possibilities, resulting in input spaces which are, by their very nature, exquisitely sparsely populated. In particular, connection probability ½, as found in the locust antennal-lobe-mushroom-body circuit, serves to maximize separation of neuronal representations across the target Kenyon cells (KCs), and explains their specific and reliable responses. This analysis yields a function expressing response specificity in terms of lower network parameters; together with appropriate gain control this leads to a simple neuronal algorithm for generating arbitrarily sparse and selective codes and linking network architecture and neural coding. I suggest a straightforward way to construct ecologically meaningful representations from this code.

所有神经系统面临的最基本和最一般的任务之一是从生物体的周围世界提取相关信息。虽然感觉系统可用的物理信号通常是连续的、可变的、重叠的和有噪声的,但用于决策的高级神经元表示往往是离散的、特定的、不变的和高度可分离的。这项研究解决了神经元特异性是如何产生的问题。受蝗虫嗅觉系统网络结构实验结果的启发,我构建了一个高度简化的理论框架,可以分析其关键特性。对于广义前馈系统,我表明,源种群和目标种群之间的连通性值的中间范围会导致布线可能性的组合爆炸,导致输入空间从本质上来说非常稀疏。特别是,在蝗虫触角瓣蘑菇体回路中发现的连接概率½,有助于最大限度地分离靶肯扬细胞(KCs)中的神经元表征,并解释其特定和可靠的反应。该分析产生了根据较低的网络参数表达响应特异性的函数;再加上适当的增益控制,这导致了一种简单的神经元算法,用于生成任意稀疏和选择性代码,并将网络结构和神经编码联系起来。我建议使用一种简单的方法来从该代码中构建具有生态意义的表示。
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引用次数: 8
Evolving a neural olfactorimotor system in virtual and real olfactory environments. 在虚拟和真实嗅觉环境中进化神经嗅觉运动系统。
Pub Date : 2012-10-29 eCollection Date: 2012-01-01 DOI: 10.3389/fneng.2012.00022
Paul A Rhodes, Todd O Anderson

To provide a platform to enable the study of simulated olfactory circuitry in context, we have integrated a simulated neural olfactorimotor system with a virtual world which simulates both computational fluid dynamics as well as a robotic agent capable of exploring the simulated plumes. A number of the elements which we developed for this purpose have not, to our knowledge, been previously assembled into an integrated system, including: control of a simulated agent by a neural olfactorimotor system; continuous interaction between the simulated robot and the virtual plume; the inclusion of multiple distinct odorant plumes and background odor; the systematic use of artificial evolution driven by olfactorimotor performance (e.g., time to locate a plume source) to specify parameter values; the incorporation of the realities of an imperfect physical robot using a hybrid model where a physical robot encounters a simulated plume. We close by describing ongoing work toward engineering a high dimensional, reversible, low power electronic olfactory sensor which will allow olfactorimotor neural circuitry evolved in the virtual world to control an autonomous olfactory robot in the physical world. The platform described here is intended to better test theories of olfactory circuit function, as well as provide robust odor source localization in realistic environments.

为了提供一个平台来研究模拟的嗅觉电路,我们将模拟的神经嗅觉运动系统与一个虚拟世界相结合,该虚拟世界模拟了计算流体动力学以及能够探索模拟羽流的机器人代理。据我们所知,我们为此目的开发的许多元素以前还没有组装成一个集成系统,包括:通过神经嗅觉运动系统控制模拟代理;模拟机器人与虚拟羽流的持续交互;包含多种不同气味羽状物和背景气味;系统地使用由嗅觉运动性能驱动的人工进化(例如,定位羽流源的时间)来指定参数值;使用混合模型结合不完美的物理机器人的现实,其中物理机器人遇到模拟羽流。最后,我们描述了一种高维、可逆、低功耗的电子嗅觉传感器,它将允许在虚拟世界中进化的嗅觉运动神经回路来控制物理世界中的自主嗅觉机器人。这里描述的平台旨在更好地测试嗅觉电路功能的理论,并在现实环境中提供强大的气味源定位。
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引用次数: 4
Bio-inspired solutions to the challenges of chemical sensing. 针对化学传感挑战的生物启发解决方案。
Pub Date : 2012-10-29 eCollection Date: 2012-01-01 DOI: 10.3389/fneng.2012.00024
Ramon Huerta, Thomas Nowotny
It is widely recognized that further breakthroughs in science and technology may rely on multidisciplinary research efforts. Breaking the boundaries of well-established research fields and combining methodologies from disparate areas can foster innovative and translational research. Chemical sensing is no exception. Perhaps more than any other sensory modality, chemical sensing is plagued with major technical and conceptual challenges: the turbulent nature of the signal carrier, the long term instability, lack of sensitivity, and slow response times of sensors and the lack of a reliable odor map to characterize mammalian perception. When facing these hurdles, the designers of artificial devices for gas recognition look at the olfactory system of animals for inspiration because animals seemingly effortlessly accomplish some of the unsolved challenging problems in machine olfaction: recognizing odors and odor mixtures from a chemical background, segmenting mixtures of odors into components, being sensitive and robust and extracting the same odor percept over a wide range of concentrations. Our challenge in bio-mimetic chemical sensing is to identify at all levels from the olfactory receptors to the central nervous system, what are the key ingredients to these impressive abilities. The goal of this research topic is to document highlights from this ongoing effort and to compile an up-to-date overview not only from the academic point of view but also with respect to industrial applications. This research topic emanates from our own effort to bridge the anatomical and physiological data of the olfactory system, in particular in insects, to explain pattern recognition (Huerta et al., 2004; Nowotny et al., 2005; Huerta and Nowotny, 2009) and apply them to real problems with artificial sensor arrays and other applications (Muezzinoglu et al., 2008, 2009; Huerta et al., 2012). This research topic therefore brings together researchers from chemistry, neuroscience, physics, biology, and computer science, and the described work extends from fundamental scientific questions to technological applications. On the scientific side the contributions tackle three core issues: concentration-invariant representations of odors, properties, and the potential role of oscillations in the olfactory system and the nature of odor interactions in mixtures. Cleland et al. (2012) address concentration-invariant odor perception in rats and find that there are six known mechanisms that combine to achieve odor representations that do only minimally depend on concentration. Yamani et al. (2012) take a different view on concentration-invariant odor perception. Taking inspiration from the convergence of olfactory receptor neurons onto glomeruli and the use of latency as the coding signal they design a bio-mimetic information processing method for a metal oxide gas sensor array. Martinelli et al. (2011) on the other hand have identified another advantage of latency coding
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引用次数: 5
A comparison of microelectrodes for a visual cortical prosthesis using finite element analysis. 用有限元分析比较视觉皮质假体的微电极。
Pub Date : 2012-09-28 eCollection Date: 2012-01-01 DOI: 10.3389/fneng.2012.00023
Emma Brunton, Arthur J Lowery, Ramesh Rajan

Altering the geometry of microelectrodes for use in a cortical neural prosthesis modifies the electric field generated in tissue, thereby affecting electrode efficacy and tissue damage. Commonly, electrodes with an active region located at the tip ("conical" electrodes) are used for stimulation of cortex but there is argument to believe this geometry may not be the best. Here we use finite element analysis to compare the electric fields generated by three types of electrodes, a conical electrode with exposed active tip, an annular electrode with active area located up away from the tip, and a striped annular electrode where the active annular region has bands of insulation interrupting the full active region. The results indicate that the current density on the surface of the conical electrodes can be up to 10 times greater than the current density on the annular electrodes of the same height, which may increase the propensity for tissue damage. However choosing the most efficient electrode geometry in order to reduce power consumption is dependent on the distance of the electrode to the target neurons. If neurons are located within 10 μm of the electrode, then a small conical electrode would be more power efficient. On the other hand if the target neuron is greater than 500 μm away-as happens normally when insertion of an array of electrodes into cortex results in a "kill zone" around each electrode due to insertion damage and inflammatory responses-then a large annular electrode would be more efficient.

改变用于皮质神经假体的微电极的几何形状可以改变组织中产生的电场,从而影响电极的功效和组织损伤。通常,电极的活动区域位于尖端(“锥形”电极)被用于刺激皮层,但有争论认为这种几何形状可能不是最好的。在这里,我们使用有限元分析来比较三种类型电极产生的电场,一种是具有暴露的有源尖端的锥形电极,一种是有源区域位于远离尖端的环形电极,一种是条纹环形电极,其中有源环形区域具有绝缘带,中断了完整的有源区域。结果表明,锥形电极表面的电流密度可达相同高度的环形电极表面电流密度的10倍,这可能会增加组织损伤的倾向。然而,选择最有效的电极几何形状以降低功耗取决于电极到目标神经元的距离。如果神经元位于电极的10 μm范围内,那么一个小的锥形电极将更节能。另一方面,如果目标神经元的距离大于500 μm——当电极阵列插入大脑皮层时,由于插入损伤和炎症反应,每个电极周围都会形成一个“杀伤区”,这种情况通常会发生——那么一个大的环形电极会更有效。
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引用次数: 17
期刊
Frontiers in neuroengineering
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