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Adenoid cystic carcinoma of the prostate: an unusual subtype of prostate cancer 前列腺腺样囊性癌:前列腺癌的一种罕见亚型
Pub Date : 2020-01-01 DOI: 10.20517/jtgg.2020.46
P. Julka
Adenoid cystic carcinoma (ACC) of the prostate is an extremely rare disease that arises from the basal cells of prostate acini and presents a poor prognosis for metastatic cases. Multiple treatment options exist for different stages of prostate cancer that include prostatectomy, radiation therapy, chemotherapy, and hormone therapy with gonadrotropin-releasing hormone (GnRH) agonists and antagonists for androgen receptor (AR)-positive cases. Although ACC has a biological potential that allows metastasis in a few cases; the current treatment option consists primarily of surgical resection along with close, long-term follow-up. Herein, we report this rare entity in a 79-year-old man who presented with liver metastasis. The tumor expressed GnRH receptor (GnRHR) and a very low level of Programmed death-ligand 1 (PD-L1). Immunohistochemical analysis revealed that the primary tumor was highly proliferative and AR-negative. We employed a clinically validated technology that utilizes patient's tumor and blood to recreate the tumor microenvironment ex vivo . After the diagnosis, we used the platform to test the efficacy of degarelix (a GnRHR antagonist), atezolizumab (a PD-L1 antagonist) and paclitaxel + carboplatin chemotherapeutic regimen. The assay output predicted response with chemotherapeutics and degarelix, without any sign of efficacy for PD-L1 antagonist. On the basis of these data, the patient was treated with paclitaxel + carboplatin combination chemotherapy first and showed clinical and radiological response as predicted by the ex vivo platform. After 4 cycles of chemotherapy, the patient received maintenance therapy with degarelix and demonstrated a favorable clinical response. Taken together, our results not only showed the accurate prediction Page 456 Julka et al. J Transl Genet Genom 2020;4:455-63 I http://dx.doi.org/10.20517/jtgg.2020.46 of clinical outcome but also demonstrate the rational selection of a regimen as a viable option for such a clinically challenging disease.
前列腺腺样囊性癌(ACC)是一种极其罕见的疾病,起源于前列腺腺泡的基底细胞,转移病例预后较差。针对不同阶段的前列腺癌存在多种治疗选择,包括前列腺切除术、放射治疗、化疗以及雄激素受体(AR)阳性病例使用促性腺激素释放激素(GnRH)激动剂和拮抗剂进行激素治疗。虽然ACC具有允许转移的生物学潜能,但在少数病例中;目前的治疗方案主要包括手术切除和密切的长期随访。在此,我们报告一例79岁男性出现肝转移的罕见病例。肿瘤表达GnRH受体(GnRHR)和极低水平的程序性死亡配体1 (PD-L1)。免疫组化分析显示原发肿瘤高度增殖,ar阴性。我们采用了一种临床验证的技术,利用患者的肿瘤和血液在体外重建肿瘤微环境。诊断后,我们利用该平台检测了degarelix(一种GnRHR拮抗剂)、atezolizumab(一种PD-L1拮抗剂)和紫杉醇+卡铂化疗方案的疗效。分析结果预测了化疗药物和去格雷利克斯的反应,没有任何迹象表明PD-L1拮抗剂有效。在这些数据的基础上,患者首先接受紫杉醇+卡铂联合化疗,并在离体平台上显示出临床和放射学反应。化疗4个周期后,患者接受degarelix维持治疗,临床反应良好。综上所述,我们的结果不仅显示了准确的预测。[J]中华临床医学杂志,2020;4:455-63 [http://dx.doi.org/10.20517/jtgg.2020.46],但也证明了这种临床挑战性疾病的合理选择方案是可行的。
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引用次数: 2
Mitochondrial diseases: expanding the diagnosis in the era of genetic testing. 线粒体疾病:在基因检测时代扩大诊断。
Pub Date : 2020-01-01 Epub Date: 2020-09-29 DOI: 10.20517/jtgg.2020.40
Russell P Saneto

Mitochondrial diseases are clinically and genetically heterogeneous. These diseases were initially described a little over three decades ago. Limited diagnostic tools created disease descriptions based on clinical, biochemical analytes, neuroimaging, and muscle biopsy findings. This diagnostic mechanism continued to evolve detection of inherited oxidative phosphorylation disorders and expanded discovery of mitochondrial physiology over the next two decades. Limited genetic testing hampered the definitive diagnostic identification and breadth of diseases. Over the last decade, the development and incorporation of massive parallel sequencing has identified approximately 300 genes involved in mitochondrial disease. Gene testing has enlarged our understanding of how genetic defects lead to cellular dysfunction and disease. These findings have expanded the understanding of how mechanisms of mitochondrial physiology can induce dysfunction and disease, but the complete collection of disease-causing gene variants remains incomplete. This article reviews the developments in disease gene discovery and the incorporation of gene findings with mitochondrial physiology. This understanding is critical to the development of targeted therapies.

线粒体疾病在临床上和遗传学上都是异质的。这些疾病最初是在三十多年前被描述出来的。有限的诊断工具根据临床、生化分析、神经成像和肌肉活检结果创建疾病描述。在接下来的二十年里,这种诊断机制继续演变为遗传性氧化磷酸化疾病的检测,并扩大了线粒体生理学的发现。有限的基因检测妨碍了疾病的明确诊断鉴定和广度。在过去的十年中,大规模平行测序的发展和结合已经确定了大约300个与线粒体疾病有关的基因。基因检测扩大了我们对基因缺陷如何导致细胞功能障碍和疾病的理解。这些发现扩大了对线粒体生理机制如何诱导功能障碍和疾病的理解,但致病基因变异的完整收集仍然不完整。本文综述了疾病基因发现的进展以及基因发现与线粒体生理学的结合。这种认识对靶向治疗的发展至关重要。
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引用次数: 11
Redefining infantile-onset multisystem phenotypes of coenzyme Q10-deficiency in the next-generation sequencing era. 在下一代测序时代重新定义辅酶q10缺乏症的婴儿发病多系统表型。
Pub Date : 2020-01-01 Epub Date: 2020-04-23 DOI: 10.20517/jtgg.2020.02
Andres Berardo, Catarina M Quinzii

Primary coenzyme Q10 (CoQ10) deficiency encompasses a subset of mitochondrial diseases caused by mutations affecting proteins involved in the CoQ10 biosynthetic pathway. One of the most frequent clinical syndromes associated with primary CoQ10 deficiency is the severe infantile multisystemic form, which, until recently, was underdiagnosed. In the last few years, the availability of genetic screening through whole exome sequencing and whole genome sequencing has enabled molecular diagnosis in a growing number of patients with this syndrome and has revealed new disease phenotypes and molecular defects in CoQ10 biosynthetic pathway genes. Early genetic screening can rapidly and non-invasively diagnose primary CoQ10 deficiencies. Early diagnosis is particularly important in cases of CoQ10 deficient steroid-resistant nephrotic syndrome, which frequently improves with treatment. In contrast, the infantile multisystemic forms of CoQ10 deficiency, particularly when manifesting with encephalopathy, present therapeutic challenges, due to poor responses to CoQ10 supplementation. Administration of CoQ10 biosynthetic intermediate compounds is a promising alternative to CoQ10; however, further pre-clinical studies are needed to establish their safety and efficacy, as well as to elucidate the mechanism of actions of the intermediates. Here, we review the molecular defects causes of the multisystemic infantile phenotype of primary CoQ10 deficiency, genotype-phenotype correlations, and recent therapeutic advances.

初级辅酶Q10 (CoQ10)缺乏症包括由影响CoQ10生物合成途径中涉及的蛋白质的突变引起的线粒体疾病的子集。与原发性辅酶q10缺乏症相关的最常见的临床综合征之一是严重的婴儿多系统形式,直到最近才被诊断出来。在过去的几年中,通过全外显子组测序和全基因组测序的遗传筛查的可用性使得越来越多的该综合征患者的分子诊断成为可能,并揭示了新的疾病表型和CoQ10生物合成途径基因的分子缺陷。早期遗传筛查可以快速、无创地诊断原发性辅酶q10缺乏症。早期诊断对于辅酶q10缺乏的类固醇抵抗性肾病综合征尤为重要,这种情况通常会随着治疗而改善。相反,婴儿多系统形式的辅酶q10缺乏症,特别是当表现为脑病时,由于对辅酶q10补充的反应不佳,给治疗带来了挑战。辅酶q10生物合成中间化合物是辅酶q10的有前途的替代品;然而,需要进一步的临床前研究来确定它们的安全性和有效性,并阐明中间体的作用机制。在这里,我们回顾了多系统辅酶q10缺乏的婴儿表型的分子缺陷原因,基因型-表型相关性,以及最近的治疗进展。
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引用次数: 7
Mitochondrial translation defects and human disease. 线粒体翻译缺陷与人类疾病。
Pub Date : 2020-01-01 Epub Date: 2020-05-23 DOI: 10.20517/jtgg.2020.11
Bryn D Webb, George A Diaz, Pankaj Prasun

In eukaryotic cells, mitochondria perform the essential function of producing cellular energy in the form of ATP via the oxidative phosphorylation system. This system is composed of 5 multimeric protein complexes of which 13 protein subunits are encoded by the mitochondrial genome: Complex I (7 subunits), Complex III (1 subunit),Complex IV (3 subunits), and Complex (2 subunits). Effective mitochondrial translation is necessary to produce the protein subunits encoded by the mitochondrial genome (mtDNA). Defects in mitochondrial translation are known to cause a wide variety of clinical disease in humans with high-energy consuming organs generally most prominently affected. Here, we review several classes of disease resulting from defective mitochondrial translation including disorders with mitochondrial tRNA mutations, mitochondrial aminoacyl-tRNA synthetase disorders, mitochondrial rRNA mutations, and mitochondrial ribosomal protein disorders.

在真核细胞中,线粒体通过氧化磷酸化系统以ATP的形式产生细胞能量。该系统由5个多聚体蛋白复合物组成,其中13个蛋白亚基由线粒体基因组编码:Complex I(7个亚基)、Complex III(1个亚基)、Complex IV(3个亚基)和Complex(2个亚基)。有效的线粒体翻译是产生线粒体基因组(mtDNA)编码的蛋白质亚基所必需的。已知线粒体翻译缺陷会导致人类多种临床疾病,高能量消耗器官通常受到最显著的影响。在这里,我们回顾了几种由线粒体翻译缺陷引起的疾病,包括线粒体tRNA突变、线粒体氨基酰基-tRNA合成酶紊乱、线粒体rRNA突变和线粒体核糖体蛋白紊乱。
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引用次数: 13
Towards clinical implementation of circulating cell-free DNA in precision medicine. 循环无细胞DNA在精准医学中的临床应用。
Pub Date : 2019-09-01 DOI: 10.20517/jtgg.2019.07
Wei Zhang
© The Author(s) 2019. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, sharing, adaptation, distribution and reproduction in any medium or format, for any purpose, even commercially, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. Towards clinical implementation of circulating cell-free DNA in precision medicine
©作者2019。开放获取本文遵循知识共享署名4.0国际许可协议(https://creativecommons.org/licenses/by/4.0/),该协议允许不受限制地使用、共享、改编、分发和复制,以任何媒介或格式,用于任何目的,甚至商业目的,只要您适当地注明原作者和来源,提供知识共享许可协议的链接,并注明是否进行了更改。循环游离DNA在精准医学中的临床应用
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引用次数: 2
microRNAs in asthma pathogenesis - from mouse to man microrna在哮喘发病机制中的作用——从小鼠到人类
Pub Date : 2019-01-20 DOI: 10.20517/JTGG.2018.30
J. Weidner, C. Malmhäll, M. Rådinger
Asthma is a heterogenic disease affecting over 300 million people of all ages and socioeconomic status worldwide. The disease is characterized by chronic airway inflammation, reversible airflow obstruction, wheeze, cough and shortness of breath. Although asthma has been traditionally described by phenotypes such as immune cell type or allergy, it is clear that a variety of subtypes have emerged, adding further complexity to the disease. microRNAs are small, non-coding RNAs that act as regulatory molecules, binding to one or several target mRNAs, often resulting in translational silencing. In recent years, microRNAs have been the subject of many studies in order to better understand the mechanisms driving asthma development as well as discovery of potential biomarkers for asthma. In this review, we focus on the emerging role of microRNAs in asthma, from animal models to human cohorts.
哮喘是一种异源性疾病,影响全世界所有年龄和社会经济地位的3亿多人。该病的特点是慢性气道炎症、可逆性气流阻塞、喘息、咳嗽和呼吸短促。虽然哮喘传统上是通过免疫细胞类型或过敏等表型来描述的,但很明显,各种亚型已经出现,进一步增加了疾病的复杂性。microrna是一种小的非编码rna,作为调控分子,与一个或几个靶mrna结合,通常导致翻译沉默。近年来,为了更好地了解推动哮喘发展的机制以及发现潜在的哮喘生物标志物,microrna已成为许多研究的主题。在这篇综述中,我们关注microrna在哮喘中的新作用,从动物模型到人类队列。
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引用次数: 16
Evolution of the prostate cancer genome towards resistance 前列腺癌基因组向耐药性的进化
Pub Date : 2019-01-01 DOI: 10.20517/JTGG.2019.01
F. Lorenzin, F. Demichelis
The clinical behavior of prostate cancer is highly heterogeneous, with most patients diagnosed with localized disease that successfully responds to surgery or radiotherapy or that can be followed by active surveillance. However, a fraction of men will relapse after initial treatment and eventually progress to an aggressive resistant form with metastasis spreading and high mortality, a state referred to as castration resistant prostate cancer (CRPC). The technological advances in next generation sequencing have enabled the deep genomic and epigenomic characterization of both the hormone naïve and CRPC states, leading to the definition of molecular subclasses of prostate cancer that could inform the clinicians on therapeutic strategies. These studies also shed light on the mechanisms driving resistance to therapy. CRPCs adapt to androgen receptor (AR) signaling impairment which follows first-line therapies as androgen deprivation or AR targeting by restoring the nuclear receptor signaling by means of multiple mechanisms. Alternatively, tumor cells might become resistant to targeted therapies by exploiting lineage plasticity and activating alternative pathways. This review will discuss the main mechanisms leading to the emergence of resistance to therapy in prostate cancer patients in the context of genomic and molecular features of CRPC and on their causal role in the development of resistance.
前列腺癌的临床表现是高度异质性的,大多数被诊断为局部疾病的患者对手术或放疗有成功反应,或者可以进行主动监测。然而,一小部分男性在初始治疗后会复发,并最终发展为具有转移扩散和高死亡率的侵袭性耐药形式,这种状态被称为去势抵抗性前列腺癌(CRPC)。下一代测序技术的进步使我们能够对激素naïve和CRPC状态进行深入的基因组和表观基因组表征,从而定义前列腺癌的分子亚类,从而为临床医生提供治疗策略。这些研究也揭示了对治疗产生耐药性的机制。CRPCs通过多种机制恢复核受体信号,以适应雄激素剥夺或AR靶向等一线治疗后的雄激素受体(AR)信号损伤。另外,肿瘤细胞可能通过利用谱系可塑性和激活替代途径而对靶向治疗产生耐药性。本文将从CRPC的基因组和分子特征出发,讨论导致前列腺癌患者出现耐药的主要机制及其在耐药发展中的因果作用。
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引用次数: 3
Genomic biomarkers for chronic kidney disease: the first step towards personalized medicine? 慢性肾脏疾病的基因组生物标志物:迈向个体化医疗的第一步?
Pub Date : 2019-01-01 DOI: 10.20517/jtgg.2018.16
Jingyuan Cao, Le-ting Zhou, Bi-Cheng Liu
With the prevalence of end stage renal disease steadily increasing, chronic kidney disease (CKD) represents an impending public healthcare challenge. Classical diagnostic biomarkers of CKD, including creatinine, have low sensitivity and specificity. Thus, novel diagnostic and prognostic biomarkers for patients at high risk of early-stage progression are urgently needed. Personalized medicine approaches generally stratify patients according to their biological or genomic make-up. Targeted clinical trials require more precise identification of these subgroups. The use of new biomarkers obtained via high-throughput technologies is expected in future, accompanied by vast improvements in computational power applied in genomics, proteomics, and metabolomics studies using biological fluids and renal biopsy tissue. Genomic biomarkers may not only provide additional information regarding the etiology and mechanisms underlying CKD progression, but may also enable early diagnosis and the selection of appropriate drugs, thereby personalizing therapy. This review discusses commonly used research methods in genomic medicine and summarizes currently available genomic biomarkers in inherited and acquired CKD.
随着终末期肾脏疾病的患病率稳步上升,慢性肾脏疾病(CKD)是一个迫在眉睫的公共卫生挑战。CKD的经典诊断生物标志物,包括肌酐,具有较低的敏感性和特异性。因此,迫切需要针对早期进展高风险患者的新型诊断和预后生物标志物。个性化医疗方法通常根据患者的生物学或基因组组成对患者进行分层。有针对性的临床试验需要更精确地识别这些亚群。随着基因组学、蛋白质组学和代谢组学研究中使用生物体液和肾活检组织的计算能力的巨大提高,通过高通量技术获得的新生物标志物的使用有望在未来得到应用。基因组生物标志物不仅可以提供关于CKD病因和机制的额外信息,还可以帮助早期诊断和选择合适的药物,从而个性化治疗。本文综述了基因组医学中常用的研究方法,总结了目前遗传和获得性CKD的基因组生物标志物。
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引用次数: 0
Overview of liposarcomas and their genomic landscape 脂肪肉瘤的概述及其基因组景观
Pub Date : 2019-01-01 DOI: 10.20517/JTGG.2019.03
E. Keung, N. Somaiah
Liposarcoma (LPS) is among the most common soft tissue sarcoma affecting adults. LPS is divided into three biologic subtypes characterized by specific genetic alterations. The most common LPS subtypes, well-differentiated and dedifferentiated LPS, are nearly uniformly characterized by ring chromosomes and giant markers with chromosomal amplification of 12q13-15 and resulting amplification of oncogenes MDM2, CDK4, and HMGA2. Myxoid/round cell LPS commonly exhibits a distinctive (12; 16) translocation resulting in the FUS-DDIT3 fusion gene. Finally, pleomorphic LPS harbors diverse complex genomic changes and chromosomal rearrangements and frequent mutations in TP53, RB1, and NF1 leading to dysregulation of tumor suppressor pathways. In this review, we summarize the currently available knowledge on the genomics and genetics of LPS subtypes as well as recent advances in the multimodality management of LPS.
脂肪肉瘤(LPS)是影响成人的最常见的软组织肉瘤之一。LPS分为三种以特定遗传改变为特征的生物学亚型。最常见的脂多糖亚型,高分化和去分化的脂多糖,几乎一致地以环状染色体和巨大的标记为特征,染色体扩增12q13-15,从而扩增致癌基因MDM2, CDK4和HMGA2。粘液样/圆细胞LPS通常表现出独特的(12;16)易位导致FUS-DDIT3融合基因。最后,多型LPS包含多种复杂的基因组变化和染色体重排,以及TP53、RB1和NF1的频繁突变,导致肿瘤抑制通路失调。在这篇综述中,我们总结了目前在LPS亚型的基因组学和遗传学方面的现有知识,以及在LPS的多模式管理方面的最新进展。
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引用次数: 14
Emerging role of MicroRNAs in allergic diseases microrna在过敏性疾病中的新作用
Pub Date : 2019-01-01 DOI: 10.20517/jtgg.2018.32
F. Ishmael
{"title":"Emerging role of MicroRNAs in allergic diseases","authors":"F. Ishmael","doi":"10.20517/jtgg.2018.32","DOIUrl":"https://doi.org/10.20517/jtgg.2018.32","url":null,"abstract":"","PeriodicalId":73999,"journal":{"name":"Journal of translational genetics and genomics","volume":"21 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2019-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88324568","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of translational genetics and genomics
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