Data augmentation has been a popular method for fine-tuning pre-trained language models to increase model robustness and performance. With augmentation data coming from modifying gold train data (in-sample augmentation) or being harvested from general domain unlabeled data (out-of-sample augmentation), the quality of such data is the key to successful fine-tuning. In this paper, we propose a dynamic data selection method to select effective augmentation data from different augmentation sources according to the model's learning stage, by identifying a set of augmentation samples that optimally facilitates the learning process of the most current model. The method firstly filters out augmentation samples with noisy pseudo labels through a curriculum learning strategy, then estimates the effectiveness of reserved augmentation data by its influence scores on the current model at every update, allowing the data selection process tightly tailored to model parameters. And the two-stage augmentation strategy considers in-sample augmentation and out-of-sample augmentation in different learning stages. Experiments with both kinds of augmentation data on a variety of sentence classification tasks show that our method outperforms strong baselines, proving the effectiveness of our method. Analysis confirms the dynamic nature of the data effectiveness and the importance of model learning stages in utilization of augmentation data.
This paper proposes a new natural language processing (NLP) application for identifying medical jargon terms potentially difficult for patients to comprehend from electronic health record (EHR) notes. We first present a novel and publicly available dataset with expert-annotated medical jargon terms from 18K+ EHR note sentences (MedJ). Then, we introduce a novel medical jargon extraction (MedJEx) model which has been shown to outperform existing state-of-the-art NLP models. First, MedJEx improved the overall performance when it was trained on an auxiliary Wikipedia hyperlink span dataset, where hyperlink spans provide additional Wikipedia articles to explain the spans (or terms), and then fine-tuned on the annotated MedJ data. Secondly, we found that a contextualized masked language model score was beneficial for detecting domain-specific unfamiliar jargon terms. Moreover, our results show that training on the auxiliary Wikipedia hyperlink span datasets improved six out of eight biomedical named entity recognition benchmark datasets. Both MedJ and MedJEx are publicly available.
Existing vision-text contrastive learning like CLIP (Radford et al., 2021) aims to match the paired image and caption embeddings while pushing others apart, which improves representation transferability and supports zero-shot prediction. However, medical image-text datasets are orders of magnitude below the general images and captions from the internet. Moreover, previous methods encounter many false negatives, i.e., images and reports from separate patients probably carry the same semantics but are wrongly treated as negatives. In this paper, we decouple images and texts for multimodal contrastive learning thus scaling the usable training data in a combinatorial magnitude with low cost. We also propose to replace the InfoNCE loss with semantic matching loss based on medical knowledge to eliminate false negatives in contrastive learning. We prove that MedCLIP is a simple yet effective framework: it outperforms state-of-the-art methods on zero-shot prediction, supervised classification, and image-text retrieval. Surprisingly, we observe that with only 20K pre-training data, MedCLIP wins over the state-of-the-art method (using ≈200K data).