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Sleep disturbance and multimorbidity: a cross-sectional and longitudinal study in the knee pain and related health in the community cohort. 睡眠障碍和多病:社区队列中膝关节疼痛和相关健康的横断面和纵向研究
Pub Date : 2025-06-11 eCollection Date: 2025-01-01 DOI: 10.1093/sleepadvances/zpaf039
Will Thompson, Subhashisa Swain, Carol Coupland, Frances Rees, Phil Courtney, Michelle Hall, Eamonn Ferguson, David A Walsh, Ana M Valdes, Richard Morriss, Michael Doherty, Weiya Zhang

Study objectives: To examine whether there is a temporal association between sleep disturbance and multimorbidity.

Methods: We performed a cross-sectional and longitudinal observational analysis in people aged 40 years or more, recruited from the knee pain and related health in the community cohort study. The primary exposure was the Sleep Problems Index II score in tertiles measured at baseline. The primary outcome was count of chronic conditions developed in 5 years. Pain, low mood, and anxiety were measured at 2 years as mediators. Poisson regression was used to calculate adjusted relative risk and 95% confidence intervals.

Results: We included 4488 participants in the cross-sectional analysis at baseline and 1941 in the 5-year longitudinal analysis. At baseline, the adjusted relative risks for prevalent multimorbidity were 1 (reference) for tertile 1, 1.09 (95% confidence interval; 1.01-1.18) for tertile 2, and 1.21 (95% confidence interval; 1.11-1.32) for tertile 3 of the sleep disturbance score (p for trend <.001). Of the total association between sleep disturbance and multimorbidity, 14 per cent (95% confidence interval; 9% to 19%) were mediated by pain and 7 per cent (95% confidence interval; 2% to 13%) by low mood. In the 5 year follow-up, the adjusted relative risk for incident multimorbidity were 1 (reference) for tertile 1, 1.12 (95% confidence interval; 0.98-1.28) for tertile 2, and 1.25 (95% confidence interval; 1.06-1.47) for tertile 3 (p for trend .007). Of the total association between sleep disturbance and multimorbidity, 10 per cent (95% confidence interval; 2% to 18%) was mediated by pain.

Conclusions: Sleep disturbance is associated with multimorbidity. The association is dose-dependent, temporal, and partially mediated by pain.

研究目的:探讨睡眠障碍与多病之间是否存在时间关联。方法:我们在社区队列研究中招募了年龄在40岁或以上的膝关节疼痛和相关健康人群,进行了横断面和纵向观察分析。主要暴露是睡眠问题指数II在基线测量时的分位数。主要终点是5年内发生的慢性疾病的计数。疼痛、情绪低落和焦虑在2年时作为中介进行测量。泊松回归计算调整后的相对危险度和95%置信区间。结果:我们在基线的横断面分析中纳入4488名参与者,在5年的纵向分析中纳入1941名参与者。在基线时,睡眠障碍评分的1分位数校正后的多重发病率相对危险度为1(参考),2分位数校正后的相对危险度为1.09(95%可信区间;1.01-1.18),3分位数校正后的相对危险度为1.21(95%可信区间;1.11-1.32)(p为趋势)。结论:睡眠障碍与多重发病率相关。这种关联是剂量依赖性的,暂时性的,部分由疼痛介导。
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引用次数: 0
Sleep timing and duration for working adults in the United States before and since the beginning of the COVID-19 pandemic. 在COVID-19大流行开始之前和之后,美国工作成年人的睡眠时间和持续时间
Pub Date : 2025-06-10 eCollection Date: 2025-01-01 DOI: 10.1093/sleepadvances/zpaf040
Evan Mathura, Diane S Lauderdale

Study objectives: Diverse studies have reported longer sleep durations and later circadian timing during the initial COVID-19 lockdown period. Little is known about whether effects persisted after 2020. This analysis addresses three questions: (1) How did sleep timing and duration change from 2017 to 2023? (2) Did working from home explain trends? (3) Did effects differ by education, income, or race/ethnicity groups?

Methods: The American Time Use Survey is a nationally representative survey conducted by the US Bureau of Labor Statistics that collects 24-hour time diaries. These data are used to identify respondents who worked on the sampled day, their work location (home or not), and three sleep variables: wake-up time, bedtime, and 24-hour sleep total. Ordinary least squares regression is used to answer the study questions, comparing the COVID time period (May 2020 to December 2023) to PRECOVID (January 2017 to March 2020).

Results: Sleep duration was longer in the COVID time period compared to PRECOVID, by 0.23 hours (95% confidence interval = 0.17, 0.29), with earlier average bedtimes and later average waking times. There were no significant secular trends in sleep outcomes within the COVID time period, suggesting that these changes have continued through 2023. Controlling for working from home modestly attenuated, but did not eliminate, the COVID effects. Effects were generally similar across sociodemographic groups.

Conclusions: COVID-related changes in sleep for working adults in the United States, specifically later circadian timing and increased duration, seem to be sustained through 2023.

研究目标:不同的研究报告称,在COVID-19最初的封锁期间,睡眠时间更长,昼夜节律时间更晚。对于2020年之后的影响是否会持续,人们知之甚少。这一分析解决了三个问题:(1)从2017年到2023年,睡眠时间和持续时间是如何变化的?(2)在家工作是否解释了趋势?(3)教育、收入或种族/民族群体的影响是否不同?方法:美国人时间使用调查是由美国劳工统计局进行的一项具有全国代表性的调查,收集了24小时的时间日记。这些数据用于确定在抽样日工作的受访者,他们的工作地点(是否在家),以及三个睡眠变量:起床时间,就寝时间和24小时睡眠总数。使用普通最小二乘回归来回答研究问题,将COVID时间段(2020年5月至2023年12月)与PRECOVID时间段(2017年1月至2020年3月)进行比较。结果:与PRECOVID相比,COVID时间段的睡眠时间延长了0.23小时(95%置信区间= 0.17,0.29),平均就寝时间提前,平均起床时间推迟。在新冠肺炎期间,睡眠结果没有明显的长期趋势,这表明这些变化将持续到2023年。控制在家工作适度减弱了COVID的影响,但没有消除。在不同的社会人口群体中,效果大致相似。结论:美国工作成年人与covid - 19相关的睡眠变化,特别是昼夜节律时间的推迟和持续时间的增加,似乎将持续到2023年。
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引用次数: 0
Cognitive behavioral therapy for insomnia among heavy-drinking veterans: a randomized pilot trial. 酗酒老兵失眠的认知行为疗法:一项随机试点试验。
Pub Date : 2025-06-10 eCollection Date: 2025-04-01 DOI: 10.1093/sleepadvances/zpaf037
Mary Beth Miller, Ryan W Carpenter, Sydney D Shoemaker, Katie R Moskal, Brian Borsari, Eric R Pedersen, Bruce D Bartholow, Douglas Steinley, Christina S McCrae

Study objectives: Two in five Veterans report symptoms of insomnia, with higher rates among those who drink heavily. Although Cognitive Behavioral Therapy for Insomnia (CBT-I) has demonstrated efficacy among those with Alcohol Use Disorder, abstinence is often considered a prerequisite for treatment, leaving its impact unclear among those who are actively drinking. This trial tested the efficacy of CBT-I among heavy-drinking Veterans with insomnia (#NCT03804788).

Methods: Veterans from across the United States were randomly assigned to CBT-I or sleep hygiene control. Participants completed retrospective surveys and 14 sleep diaries at baseline, post-treatment, and 3-month follow-up. Primary outcomes were feasibility and insomnia severity. All other outcomes are secondary/exploratory. Intent-to-treat analyses were conducted using multilevel models.

Results: Recruitment spanned June 2019 to March 2023 (N = 71, 80% male, M = 38 years). On average, we recruited 4 participants per month, with retention of 86% at post-treatment and 90% at follow-up. Of 38 CBT-I participants, 33 (87%) completed all 5 treatment sessions, and most responded to treatment (based on change in outcome scores; 22/38 at post, 27/38 at follow-up). Relative to control (n = 33), CBT-I participants reported large improvements in insomnia severity, both post-treatment [d = 1.26 (95% CI: 0.74, 1.76)] and at 3-month follow-up [d = 1.33 (95% CI: 0.81, 1.84)]. At follow-up, results for use of alcohol as a sleep aid [d = 0.66 (95% CI: 0.18, 1.14)] and sleep medication [d = 0.44 (95% CI: -0.03, 0.91)] also favored CBT-I.

Conclusions: CBT-I is feasible among heavy-drinking Veterans and has large effects on insomnia severity. Studies testing mechanistic effects on alcohol outcomes are warranted.

Clinical trial information: The iTAP Study for Veterans, registered on clinicaltrials.gov (#NCT03804788) on January 11, 2019: https://clinicaltrials.gov/study/NCT03804788?term=NCT03804788&rank=1.

研究目的:五分之二的退伍军人报告有失眠症状,酗酒者的比例更高。尽管认知行为疗法失眠(CBT-I)已经证明对酒精使用障碍患者有效,但戒酒通常被认为是治疗的先决条件,对那些积极饮酒的人的影响尚不清楚。这项试验测试了CBT-I对重度饮酒失眠退伍军人(#NCT03804788)的疗效。方法:来自美国各地的退伍军人被随机分配到CBT-I或睡眠卫生控制组。参与者在基线、治疗后和3个月的随访期间完成了回顾性调查和14份睡眠日记。主要结局是可行性和失眠严重程度。所有其他结果都是次要的/探索性的。意向治疗分析使用多层模型进行。结果:招募时间为2019年6月至2023年3月(N = 71, 80%为男性,M = 38岁)。我们平均每月招募4名参与者,治疗后保留率为86%,随访时保留率为90%。在38名CBT-I参与者中,33名(87%)完成了所有5次治疗,并且大多数对治疗有反应(基于结果评分的变化;22/38在岗位,27/38在后续)。相对于对照组(n = 33), CBT-I参与者在治疗后[d = 1.26 (95% CI: 0.74, 1.76)]和3个月随访时[d = 1.33 (95% CI: 0.81, 1.84)]的失眠严重程度均有较大改善。在随访中,使用酒精作为助眠剂[d = 0.66 (95% CI: 0.18, 1.14)]和睡眠药物[d = 0.44 (95% CI: -0.03, 0.91)]的结果也有利于CBT-I。结论:CBT-I在重度饮酒退伍军人中是可行的,对失眠严重程度有较大影响。研究酒精对结果的机制影响是有必要的。临床试验信息:退伍军人iTAP研究,于2019年1月11日在clinicaltrials.gov (#NCT03804788)注册:https://clinicaltrials.gov/study/NCT03804788?term=NCT03804788&rank=1。
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引用次数: 0
Association of nocturnal hypoxemia and white blood cell count in a multicenter cohort. 多中心队列中夜间低氧血症与白细胞计数的关系
Pub Date : 2025-06-09 eCollection Date: 2025-04-01 DOI: 10.1093/sleepadvances/zpaf028
Aditi Shah, Mohammadreza Hajipour, A J Hirsch Allen, Najib Ayas, Tetyana Kendzerska, Patrick Hanly, John Kimoff, Frederic Series, Annie Lajoie, Rebecca Robillard, Rachel Jen, Andrew E Beaudin, Jill Raneri, Robert Skomro

Study objectives: There is a higher risk of cardiovascular disease (CVD) in patients with obstructive sleep apnea (OSA) and innate immunity is a potential pathophysiologic pathway. The objective of this study was to determine whether nocturnal hypoxemia is associated with circulating markers of innate immunity in OSA.

Methods: This was a cross-sectional study of an observational cohort from the multicentre, clinic-based, Canadian Sleep and Circadian Network. Oxygen desaturation index 4% (ODI4%) was used to diagnose and determine the severity of OSA. The percentage of time spent below SpO2 <90% (T90) and minimum SpO2 we considered as other measures of nocturnal hypoxemia. Multiple linear regressions were used to assess associations between total white blood cell (WBC) and subsets and ODI and hypoxemia indices.

Results: A total of 1296 patients were included in the analysis. There was a positive association between ODI4% and lymphocyte count, adjusting for confounders. For every 1-SD increase in ODI4%, lymphocyte counts increased by 0.08 × 109 L (95% CI 0.01 to 0.15) SD. Patients with severe OSA (ODI4% ≥ 30 events/hour) had significantly higher total WBC and lymphocyte count than non-OSA cohort, in the adjusted model, p-value <.02, for both. There was a positive association between T90 and total WBC, neutrophil, lymphocyte, and monocyte count, adjusting for confounders. Minimum SpO2 was independently associated with total WBC, neutrophil, and monocyte counts.

Conclusions: In this pan-Canadian clinic-based cohort of individuals with suspected OSA, nocturnal hypoxemia indices were associated with an increase in total WBC and subset counts.

研究目的:阻塞性睡眠呼吸暂停(OSA)患者发生心血管疾病(CVD)的风险较高,先天免疫是一种潜在的病理生理途径。本研究的目的是确定夜间低氧血症是否与OSA患者先天免疫的循环标志物有关。方法:这是一项来自多中心、临床为基础的加拿大睡眠和昼夜节律网络的观察性队列的横断面研究。氧去饱和指数4% (ODI4%)用于诊断和判断OSA的严重程度。我们认为低于SpO2的时间百分比是夜间低氧血症的其他指标。使用多元线性回归来评估总白细胞(WBC)和亚群与ODI和低氧血症指数之间的关系。结果:共纳入1296例患者。经混杂因素调整后,ODI4%与淋巴细胞计数呈正相关。ODI4%每增加1-SD,淋巴细胞计数增加0.08 × 109 L (95% CI 0.01 ~ 0.15) SD。重度OSA患者(ODI4%≥30事件/小时)的总白细胞计数和淋巴细胞计数明显高于非OSA队列,在调整后的模型中,p值2与总白细胞计数、中性粒细胞计数和单核细胞计数独立相关。结论:在这个泛加拿大临床为基础的疑似OSA患者队列中,夜间低氧血症指数与白细胞总数和亚群计数的增加有关。
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引用次数: 0
The effects of acute trazodone administration on sleep in mice. 急性曲唑酮对小鼠睡眠的影响。
Pub Date : 2025-05-28 eCollection Date: 2025-04-01 DOI: 10.1093/sleepadvances/zpaf031
Mayuko Arai, Brianne A Kent

Study objectives: Trazodone is an antidepressant with robust hypnotic effects, frequently prescribed off-label to treat insomnia. Trazodone has gained recent attention in the context of neurodegenerative diseases because sleep has been proposed as a novel target for disease-modifying therapeutics. Preclinical research in rodents examining the effects of trazodone on sleep is limited, so here we aimed to develop a translationally focused protocol to study the sleep-promoting effects of trazodone in mice.

Methods: We investigated the effects of voluntary oral trazodone administration at doses of 10, 40, and 60 mg/kg on sleep in C57BL/6J mice (n = 15; females = 6; age 10-13 months). Mice were dosed with trazodone for 6 consecutive nights, while being recorded with intracranially implanted 2-channel electroencephalogram (EEG) and electromyography (EMG). EEG/EMG recordings were analyzed for time spent in each vigilance state and power spectra.

Results: A single dose of trazodone, administered prior to the onset of the 12-h rest phase, dose-dependently increased non-rapid eye movement (NREM) sleep and delta power during NREM sleep, at the expense of rapid eye movement (REM) sleep. These effects on sleep persisted after six consecutive days of dosing, albeit to a lesser extent.

Conclusions: We have validated a novel voluntary oral administration protocol for trazodone use in mice and have shown that trazodone effectively promotes NREM in mice. Our novel protocol will be useful for future research investigating the effects of trazodone on sleep in mouse models of disease.

研究目的:曲唑酮是一种抗抑郁药,具有强大的催眠作用,经常用于治疗失眠。曲唑酮最近在神经退行性疾病的研究中引起了人们的关注,因为睡眠已被提出作为一种新的疾病修饰治疗靶点。在啮齿动物中研究曲唑酮对睡眠影响的临床前研究是有限的,因此在这里,我们的目标是制定一个以翻译为重点的方案来研究曲唑酮对小鼠的睡眠促进作用。方法:研究自愿口服曲唑酮(10、40、60 mg/kg)对C57BL/6J小鼠睡眠的影响(n = 15;女性= 6;10-13个月)。小鼠连续6晚给药曲唑酮,记录脑内植入双通道脑电图(EEG)和肌电(EMG)。分析脑电图/肌电图记录在每个警戒状态下花费的时间和功率谱。结果:在12小时休息期开始前给予单剂量曲唑酮,剂量依赖性地增加了非快速眼动(NREM)睡眠和NREM睡眠期间的δ功率,以牺牲快速眼动(REM)睡眠为代价。这些对睡眠的影响在连续六天服药后仍然存在,尽管程度较轻。结论:我们已经验证了曲唑酮在小鼠中使用的一种新的自愿口服给药方案,并表明曲唑酮有效地促进小鼠NREM。我们的新方案将有助于未来研究曲唑酮对疾病小鼠模型睡眠的影响。
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引用次数: 0
Targeted memory reactivation during REM sleep may selectively enhance the late positive potential amplitude in previously encountered negative images: preliminary findings. 在快速眼动睡眠期间有针对性的记忆再激活可能选择性地增强先前遇到的负面图像的晚期正电位振幅:初步发现。
Pub Date : 2025-05-24 eCollection Date: 2025-04-01 DOI: 10.1093/sleepadvances/zpaf034
Kazuki Sato, Satomi Okabe, Yoko Suzuki, Takashi Abe

The function of rapid eye movement (REM) sleep in consolidating emotional memories and reducing emotional charge has been studied, but evidence remains conflicting. Our study employed the targeted memory reactivation (TMR) technique, which posits that specific sleep memories can be reactivated through sensory stimuli during sleep. Additionally, the late positive potential (LPP), a component of event-related brain potentials, was measured while participants (N = 16, 22.5 ± 1.2 years) viewed negative, neutral, or positive images (old images) paired with an odor stimulus. During subsequent REM sleep, the same odor was presented in the TMR condition, while an odorless stimulus was presented in the control condition. Upon awakening, participants performed the same task as before sleep, with new images added to test memory. The results demonstrated that TMR increased the LPP amplitude between 500 and 800 ms after image onset following sleep for negative old images; however, no changes were observed in the LPP in the same range for negative new images and neutral or positive images. TMR during REM sleep did not influence performance on the memory task, nor did it affect levels of arousal or emotional valence immediately after viewing the emotional images. These preliminary findings from our pilot study suggest that either the presentation of phenylethyl alcohol itself or the reprocessing induced by TMR during REM sleep selectively enhances the LPP in emotional processing of previously encountered negative stimuli. Due to the small sample size of this study, further investigation is warranted to evaluate the robustness of the results.

快速眼动(REM)睡眠在巩固情绪记忆和减少情绪负荷方面的作用已被研究,但证据仍然矛盾。我们的研究采用了目标记忆再激活(TMR)技术,该技术假设特定的睡眠记忆可以通过睡眠中的感觉刺激重新激活。此外,当参与者(N = 16, 22.5±1.2岁)观看与气味刺激配对的消极、中性或积极图像(旧图像)时,测量了事件相关脑电位的一个组成部分——晚正电位(LPP)。在随后的快速眼动睡眠中,在TMR条件下呈现相同的气味,而在对照条件下呈现无气味刺激。醒来后,参与者执行与睡觉前相同的任务,并添加新图像来测试记忆。结果表明:TMR对负旧图像在睡眠后图像发作后500 ~ 800 ms的LPP幅值增加;然而,在相同的范围内,消极的新图像和中性或积极的图像的LPP没有变化。快速眼动睡眠期间的TMR并不影响记忆任务的表现,也不影响观看情绪图像后立即的唤醒水平或情绪效价。这些初步研究结果表明,无论是苯乙醇本身的存在,还是在REM睡眠期间由TMR诱导的再加工,选择性地增强了先前遇到的负面刺激的情绪加工中的LPP。由于本研究样本量小,有必要进一步调查以评估结果的稳健性。
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引用次数: 0
Reactivation fails to offer the improvement sleep does. 再激活无法提供睡眠所能提供的改善。
Pub Date : 2025-05-24 eCollection Date: 2025-04-01 DOI: 10.1093/sleepadvances/zpaf035
Murray M Barsky, Alexandra Morgan, Robert Stickgold

In a dynamic process that ultimately affords memories their persistence, memory reconsolidation can serve to strengthen associations following reactivation, particularly in sleep, where active processes may effect overnight enhancement. Reactivation can also occur in wake, where improvement would be unexpected. In an earlier study using performance on the Weather Prediction Task (WPT) as a measure of probabilistic category learning, we looked at the effect of sleep and found significant improvement after a daytime nap, where improvement correlated with the amount of REM sleep obtained. When we introduced interference training following sleep, this REM sleep benefit vanished: post-learning task memory was otherwise preserved. Here, we follow up on these results and test whether reactivation itself-wake reactivation-might be sufficient to induce the improvement found after REM sleep. Our results show that it is not: we saw no improvement on the WPT following reactivation in wake, suggesting sleep may be unique in supporting memory improvement. When we looked at interference effects, we saw unexplained differences between wake and sleep that suggest that while interference is uniformly destabilizing of WPT memories during wake, interference after REM show effects on the memory trace formed during initial learning that are distinctly different from its effects on the subsequently sleep-enhanced memory.

在一个最终使记忆持久的动态过程中,记忆再巩固可以在再激活后加强联想,特别是在睡眠中,活跃的过程可能会在夜间增强。重新激活也可能发生在尾流中,此时的改善是意料之外的。在早期的一项研究中,我们使用天气预测任务(WPT)的表现作为概率类别学习的衡量标准,研究了睡眠的影响,发现白天小睡后显著改善,其中改善与获得的快速眼动睡眠的时间有关。当我们在睡眠后引入干扰训练时,这种快速眼动睡眠的好处消失了:学习后的任务记忆在其他方面得到了保留。在这里,我们继续研究这些结果,并测试再激活本身——清醒再激活——是否足以诱导快速眼动睡眠后的改善。我们的研究结果表明,事实并非如此:我们发现醒着时WPT在重新激活后没有任何改善,这表明睡眠可能在支持记忆改善方面是独一无二的。当我们观察干扰效应时,我们发现了清醒和睡眠之间无法解释的差异,这表明,虽然干扰在清醒期间一致破坏WPT记忆的稳定,但REM后的干扰对最初学习过程中形成的记忆痕迹的影响与对随后睡眠增强记忆的影响截然不同。
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引用次数: 0
Being in the right place at the right time. 在正确的时间出现在正确的地点。
Pub Date : 2025-05-21 eCollection Date: 2025-04-01 DOI: 10.1093/sleepadvances/zpaf033
Sonia Ancoli-Israel

This paper is a review of my life as a sleep researcher and clinician. I chanced into sleep by being at the right place at the right time. Over the last 45 years, I became an expert on sleep and circadian rhythms in aging, in Alzheimer's disease and Parkinson's disease and in cancer. We were one of the first to show how common sleep apnea and periodic limb movements in sleep are in the elderly. We "moved" into the nursing home and showed how disrupted sleep is in these patients. We used light therapy to improve sleep in the nursing home. We studied the effect of CPAP on sleep and cognition in both Alzheimer's disease and Parkinson's disease. And we were some of the first to study sleep and circadian rhythms in women with breast cancer, starting the evaluations before they started their chemotherapy. These studies were both observational and treatment studies. I am very proud of the work we did. For me, everything revolves around sleep. And that is the beginning of my story.

这篇论文是对我作为睡眠研究者和临床医生的生活的回顾。我在正确的时间出现在正确的地点,从而睡着了。在过去的45年里,我成为了睡眠和衰老的昼夜节律、阿尔茨海默病、帕金森病和癌症方面的专家。我们是第一批发现睡眠呼吸暂停和睡眠中的周期性肢体运动在老年人中有多常见的人之一。我们“搬进”养老院,展示了这些病人的睡眠是如何被打乱的。我们用光疗来改善养老院的睡眠。我们研究了CPAP对阿尔茨海默病和帕金森病患者睡眠和认知的影响。我们是第一批研究乳腺癌女性睡眠和昼夜节律的人,在她们开始化疗之前就开始评估。这些研究都是观察性研究和治疗性研究。我为我们所做的工作感到非常自豪。对我来说,一切都与睡眠有关。这就是我故事的开始。
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引用次数: 0
SleepInvestigatoR: a flexible R function for analyzing scored sleep in rodents. SleepInvestigatoR:一个灵活的R函数,用于分析啮齿类动物的睡眠评分。
Pub Date : 2025-05-20 eCollection Date: 2025-04-01 DOI: 10.1093/sleepadvances/zpaf032
Mackenzie C Gamble, Benjamin R Williams, James T McKenna, Ryan W Logan

Analyzing scored sleep is a fundamental prerequisite to understanding how sleep changes between health and disease. Classically, this is accomplished by manually calculating various measures (e.g. percent of non-rapid eye movement sleep) from a collection of scored sleep files. This process can be tedious and error-prone, especially when studies include large animal numbers or involve long recording sessions. To address this issue, we present SleepInvestigatoR, a versatile tool that can quickly organize and analyze multiple scored sleep files into a single output. The function is written in the open-source statistical language R and has a total of 25 parameters that can be set to match a wide variety of experimental needs. SleepInvestigatoR delivers a total of 23 unique measures of sleep, including all measures commonly reported in the rodent literature. A simple plotting function is also provided to quickly graph and visualize the scored data. All code is designed to be implemented with little formal coding knowledge, and step-by-step instructions are provided on the corresponding GitHub page. Overall, SleepInvestigatoR provides the sleep researcher a critical tool to increase efficiency, interpretation, and reproducibility in analyzing scored rodent sleep.

分析睡眠评分是理解健康和疾病之间睡眠变化的基本前提。通常,这是通过手动计算各种测量(例如,非快速眼动睡眠的百分比)从评分的睡眠文件的集合完成的。这个过程可能很乏味,而且容易出错,尤其是当研究涉及大量动物或涉及长时间的记录时。为了解决这个问题,我们提出了SleepInvestigatoR,一个多功能工具,可以快速组织和分析多个得分的睡眠文件到单个输出。该函数是用开源统计语言R编写的,总共有25个参数,可以设置以匹配各种各样的实验需求。SleepInvestigatoR提供了23种独特的睡眠测量方法,包括啮齿类动物文献中常见的所有测量方法。一个简单的绘图功能也提供了快速绘图和可视化得分数据。所有代码的设计都是在很少的正式编码知识的情况下实现的,并且在相应的GitHub页面上提供了分步说明。总的来说,SleepInvestigatoR为睡眠研究者提供了一个重要的工具来提高效率、解释和重现分析啮齿动物睡眠评分。
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引用次数: 0
An integrative approach prioritizes the orphan GPR61 genomic region in tissue-specific regulation of chronotype. 一种综合方法优先考虑孤儿GPR61基因组区域在组织特异性时间型调节中的作用。
Pub Date : 2025-05-18 eCollection Date: 2025-04-01 DOI: 10.1093/sleepadvances/zpaf030
Cynthia Tchio, Jonathan S Williams, Herman Taylor, Hanna M Ollila, Richa Saxena

Study objectives: Chronotype, a manifestation of circadian rhythms, affects morning or evening preferences and ease of getting up. This study explores the genetic basis of morning chronotype and ease of getting up, focusing on the G-protein-coupled receptor locus, GPR61.

Methods: We analyzed the genetic correlation between chronotype and ease of getting up using linkage disequilibrium score regression with summary statistics from the UK Biobank (n = 453,379). We prioritized shared signals between chronotype and ease of getting up using the Human Genetic Evidence (HuGE) score. We assessed the significance of GPR61 and the lead variant rs12044778 through co-localization and in silico analyses from ENCODE, Genotype-Tissue Expression, Hi-C, and Knockout Mouse Project databases to explore potential regulatory roles of causal genes.

Results: We identified a strong genetic correlation (Rg = 0.80, p = 4.9 × 10324) between chronotype and ease of getting up. Twenty-three genes, including three circadian core clock components, had high HuGE scores for both traits. Lead variant rs12044778 in GPR61 was prioritized for its high HuGE score (45) and causal pleiotropy (posterior probability = 0.98). This morningness variant influenced gene expression in key tissues: decreasing GPR61 in tibial nerve, increasing AMIGO1 in subcutaneous adipose, and increasing ATXN7L2 in the cerebellum. Functional knockout models showed GPR61 knockout increased fat mass and activity, AMIGO1 knockout increased activity, and ATXN7L2 knockout reduced body weight without affecting activity.

Conclusions: Our findings reveal pleiotropic genetic factors influencing chronotype and ease of getting up, emphasizing GPR61's rs12044778 and nearby genes like AMIGO1 and ATXN7L2. These insights advance our understanding of circadian preferences and suggest potential therapeutic interventions.

研究目的:生物钟是昼夜节律的一种表现形式,影响早晚偏好和起床的难易程度。本研究从g蛋白偶联受体基因座GPR61的角度探讨了早起时间型和早起难易程度的遗传基础。方法:利用英国生物银行(UK Biobank)的汇总统计数据(n = 453,379),利用连锁不平衡评分回归分析时间型与起床难易度之间的遗传相关性。我们使用人类遗传证据(Human Genetic Evidence, HuGE)评分对睡眠类型和起床难易程度之间的共享信号进行了优先排序。我们通过共定位和来自ENCODE、基因型-组织表达、Hi-C和敲除小鼠项目数据库的计算机分析来评估GPR61和先导变体rs12044778的重要性,以探索因果基因的潜在调节作用。结果:我们发现时间类型与起床难易程度之间存在很强的遗传相关性(Rg = 0.80, p = 4.9 × 10324)。23个基因,包括三个昼夜节律核心时钟组件,在这两个特征上都有很高的分数。GPR61中的铅变异体rs12044778因其高HuGE评分(45分)和因果多效性(后验概率= 0.98)而被优先考虑。这种早起变异影响了关键组织的基因表达:胫骨神经中GPR61减少,皮下脂肪中AMIGO1增加,小脑中ATXN7L2增加。功能敲除模型显示,敲除GPR61增加脂肪量和活性,敲除AMIGO1增加活性,敲除ATXN7L2降低体重,但不影响活性。结论:我们的研究结果揭示了影响睡眠时型和起床难易程度的多效遗传因素,重点是GPR61的rs12044778及其附近基因AMIGO1和ATXN7L2。这些见解促进了我们对昼夜节律偏好的理解,并提出了潜在的治疗干预措施。
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Sleep advances : a journal of the Sleep Research Society
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