Shanshan Xi, Wei Wang, Lei Sun, Xing Chen, Jiamei Zhang and Fan Yu
The complex land use patterns in urban–rural rivers and the presence of diverse point and non-point source pollution pose significant challenges for tracing heavy metal(loid) sources in river sediments. This study employed a combined approach using lead (Pb) stable isotopes, positive matrix factorization (PMF), and a Bayesian mixture model (MixSIAR) to determine the concentrations of Cr, As, Cd, Mn, Cu, Zn, Ni, and Pb along with Pb isotope distribution characteristics in sediments from a typical urban–rural river (Yinghe River). Our investigation enabled the quantitative identification of heavy metal(loid) sources and revealed the contribution patterns of multi-source Pb pollution. The results showed that mean concentrations of all heavy metal(loid)s except Cr and Mn exceeded local soil background values. PMF analysis identified four potential sources: natural sources (19.6%) contributing primarily Cr and Mn; industrial sources (32.1%) associated with Cd, Pb, and Ni; agricultural sources (28.0%) linked to Pb, As, and Zn; and traffic sources (20.3%) related to Cu and Zn. Furthermore, by combining Pb stable isotopes with MixSIAR, the contributions of different Pb pollution sources were quantified as agricultural sources (32.1%), industrial sources (30.5%), traffic sources (27.2%), and natural sources (10.3%). The less-than-10% difference in contribution rates between PMF and MixSIAR for Pb source apportionment demonstrated model reliability. Based on the significant correlation between Pb pollution and land use patterns in the Yinghe River, corresponding pollution prevention strategies were proposed. These findings provide a novel perspective for quantitative source identification of heavy metal(loid) pollution in urban–rural river sediments, offering valuable support for river management and heavy metal(loid) pollution control.
{"title":"Quantitative assessment of Pb sources in urban–rural river sediments based on Pb isotopes and PMF and MixSIAR models","authors":"Shanshan Xi, Wei Wang, Lei Sun, Xing Chen, Jiamei Zhang and Fan Yu","doi":"10.1039/D5EM00509D","DOIUrl":"10.1039/D5EM00509D","url":null,"abstract":"<p >The complex land use patterns in urban–rural rivers and the presence of diverse point and non-point source pollution pose significant challenges for tracing heavy metal(loid) sources in river sediments. This study employed a combined approach using lead (Pb) stable isotopes, positive matrix factorization (PMF), and a Bayesian mixture model (MixSIAR) to determine the concentrations of Cr, As, Cd, Mn, Cu, Zn, Ni, and Pb along with Pb isotope distribution characteristics in sediments from a typical urban–rural river (Yinghe River). Our investigation enabled the quantitative identification of heavy metal(loid) sources and revealed the contribution patterns of multi-source Pb pollution. The results showed that mean concentrations of all heavy metal(loid)s except Cr and Mn exceeded local soil background values. PMF analysis identified four potential sources: natural sources (19.6%) contributing primarily Cr and Mn; industrial sources (32.1%) associated with Cd, Pb, and Ni; agricultural sources (28.0%) linked to Pb, As, and Zn; and traffic sources (20.3%) related to Cu and Zn. Furthermore, by combining Pb stable isotopes with MixSIAR, the contributions of different Pb pollution sources were quantified as agricultural sources (32.1%), industrial sources (30.5%), traffic sources (27.2%), and natural sources (10.3%). The less-than-10% difference in contribution rates between PMF and MixSIAR for Pb source apportionment demonstrated model reliability. Based on the significant correlation between Pb pollution and land use patterns in the Yinghe River, corresponding pollution prevention strategies were proposed. These findings provide a novel perspective for quantitative source identification of heavy metal(loid) pollution in urban–rural river sediments, offering valuable support for river management and heavy metal(loid) pollution control.</p>","PeriodicalId":74,"journal":{"name":"Environmental Science: Processes & Impacts","volume":" 1","pages":" 256-267"},"PeriodicalIF":3.9,"publicationDate":"2025-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145766601","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sarah A. Lowry, Adam Diedrich, Ella Lum, Orin C. Shanks and Alexandria B. Boehm
Fecal contamination of coastal waters threatens human and ecosystem health. Microbial source tracking (MST) methods offer a strategy to identify sources of fecal contamination through the measurement of genetic markers associated with a particular animal host. In this study, we measured fecal indicator bacteria (FIB) and employed MST methods to evaluate the sources of fecal contamination in a coupled stream-beach system in Kailua Bay, Hawai'i where residents adjacent to the shoreline use onsite cesspools for sewage management. In a baseline campaign, we measured enterococci concentrations in surface water samples from the stream and beach (n = 36). Results indicated that the stream contained enterococci in exceedance of the state standard (50% of samples) and therefore represented a potential source of contamination to the coastal ocean. To identify potential fecal sources, five MST genetic markers – three indicative of human feces (HF183/BacR287, CPQ_056, and ToBRFV), one of dog feces (DG3), and one of avian feces (GFD) – were measured alongside enterococci concentrations and environmental parameters (water temperature, salinity, tidal stage, and rainfall) in stream and beach water samples from longitudinal (n = 78) and spatial (n = 25) sampling campaigns. During the two-week longitudinal campaign, detections were observed for the avian marker (78% of samples positive), human marker ToBRFV (40%), and dog marker (10%), while HF183/BacR287 and CPQ_056 were not detected. Marker detection frequency varied by sampling location, with GFD most frequently detected in the stream and ToBRFV most frequently detected at the site adjacent to cesspools. In the spatial campaign, enterococci concentrations significantly decreased along the stream towards the beach (p < 0.001) but similar trends were not observed for MST markers. The occurrence of human, avian, and canine MST genetic markers in this study confirms these are important sources of fecal contamination in the Kailua Bay area. This study is the first to implement the RNA-based ToBRFV digital PCR assay in tropical coastal waters.
{"title":"Occurrence of novel human tomato brown rugose fruit virus and conventional microbial source tracking genetic markers in a Hawaiian coupled stream-beach system","authors":"Sarah A. Lowry, Adam Diedrich, Ella Lum, Orin C. Shanks and Alexandria B. Boehm","doi":"10.1039/D5EM00373C","DOIUrl":"10.1039/D5EM00373C","url":null,"abstract":"<p >Fecal contamination of coastal waters threatens human and ecosystem health. Microbial source tracking (MST) methods offer a strategy to identify sources of fecal contamination through the measurement of genetic markers associated with a particular animal host. In this study, we measured fecal indicator bacteria (FIB) and employed MST methods to evaluate the sources of fecal contamination in a coupled stream-beach system in Kailua Bay, Hawai'i where residents adjacent to the shoreline use onsite cesspools for sewage management. In a baseline campaign, we measured enterococci concentrations in surface water samples from the stream and beach (<em>n</em> = 36). Results indicated that the stream contained enterococci in exceedance of the state standard (50% of samples) and therefore represented a potential source of contamination to the coastal ocean. To identify potential fecal sources, five MST genetic markers – three indicative of human feces (HF183/BacR287, CPQ_056, and ToBRFV), one of dog feces (DG3), and one of avian feces (GFD) – were measured alongside enterococci concentrations and environmental parameters (water temperature, salinity, tidal stage, and rainfall) in stream and beach water samples from longitudinal (<em>n</em> = 78) and spatial (<em>n</em> = 25) sampling campaigns. During the two-week longitudinal campaign, detections were observed for the avian marker (78% of samples positive), human marker ToBRFV (40%), and dog marker (10%), while HF183/BacR287 and CPQ_056 were not detected. Marker detection frequency varied by sampling location, with GFD most frequently detected in the stream and ToBRFV most frequently detected at the site adjacent to cesspools. In the spatial campaign, enterococci concentrations significantly decreased along the stream towards the beach (<em>p</em> < 0.001) but similar trends were not observed for MST markers. The occurrence of human, avian, and canine MST genetic markers in this study confirms these are important sources of fecal contamination in the Kailua Bay area. This study is the first to implement the RNA-based ToBRFV digital PCR assay in tropical coastal waters.</p>","PeriodicalId":74,"journal":{"name":"Environmental Science: Processes & Impacts","volume":" 1","pages":" 215-229"},"PeriodicalIF":3.9,"publicationDate":"2025-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145720002","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Disinfection byproducts (DBPs) have been receiving global attention because they may have detrimental effects on organisms. Cytotoxicity and genotoxicity are two toxicity endpoints that are of wide concern in the field of DBP hazard assessment. Hitherto, only around one hundred out of thousands of identified DBPs had available experimental cytotoxicity and genotoxicity data. It is important to fill this data gap of thousands of DBPs by employing an efficient and high-throughput method. Herein, we first summarized the extensive and heterogeneous cytotoxicity (184-DBPs) and genotoxicity (105-DBPs) data sets related to DBPs. Then, quantitative and qualitative models with acceptable internal and external prediction performance were developed for cytotoxicity and genotoxicity, respectively. Next, a user-friendly tool named “DBPCytoGenoTOX Predictor” was developed using the optimal models. This tool was further applied to fill the missing cytotoxicity and genotoxicity data gaps of an updated DBP inventory with 1816 substances. Finally, the high-priority DBPs were screened from the DBP inventory based on the experimental and predicted cytotoxicity and genotoxicity data as well as the previously reported endocrine-disrupting effects and aquatic toxicity data. As a result, 385 high-priority DBPs were identified. More efforts should be taken to confirm the potential adverse effects of these high-priority DBPs on organisms in the future.
{"title":"Development of models and a tool (DBPCytoGenoTOX Predictor) for predicting the cytotoxicity and genotoxicity of disinfection byproducts","authors":"M. Y. Liu, H. H. Liu and X. H. Yang","doi":"10.1039/D5EM00552C","DOIUrl":"10.1039/D5EM00552C","url":null,"abstract":"<p >Disinfection byproducts (DBPs) have been receiving global attention because they may have detrimental effects on organisms. Cytotoxicity and genotoxicity are two toxicity endpoints that are of wide concern in the field of DBP hazard assessment. Hitherto, only around one hundred out of thousands of identified DBPs had available experimental cytotoxicity and genotoxicity data. It is important to fill this data gap of thousands of DBPs by employing an efficient and high-throughput method. Herein, we first summarized the extensive and heterogeneous cytotoxicity (184-DBPs) and genotoxicity (105-DBPs) data sets related to DBPs. Then, quantitative and qualitative models with acceptable internal and external prediction performance were developed for cytotoxicity and genotoxicity, respectively. Next, a user-friendly tool named “DBPCytoGenoTOX Predictor” was developed using the optimal models. This tool was further applied to fill the missing cytotoxicity and genotoxicity data gaps of an updated DBP inventory with 1816 substances. Finally, the high-priority DBPs were screened from the DBP inventory based on the experimental and predicted cytotoxicity and genotoxicity data as well as the previously reported endocrine-disrupting effects and aquatic toxicity data. As a result, 385 high-priority DBPs were identified. More efforts should be taken to confirm the potential adverse effects of these high-priority DBPs on organisms in the future.</p>","PeriodicalId":74,"journal":{"name":"Environmental Science: Processes & Impacts","volume":" 1","pages":" 204-214"},"PeriodicalIF":3.9,"publicationDate":"2025-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145699436","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Travis Numan, Abrar Shahriar, Srinidhi Lokesh, Anil Timilsina, Sudarshan Basyal, Yasaman Raeofy, Simon R. Poulson, Vera Samburova and Yu Yang
Wildfires drastically alter biogeochemical cycling and transport of nutrient elements, including nitrogen (N), from terrestrial to aquatic ecosystems, with the potential to degrade water quality. Understanding the impact of characteristics of wildfire-derived ashes and burned soils on the mobilization of N is essential for effectively managing wildfires and mitigating adverse effects on watershed functions. This study quantified the mobility of N in soils and ashes influenced by wildfires in the northern California/Nevada region in the western United States (Dixie, Beckwourth, and Caldor fires) and the impact of soil/ash characteristics. The mobile fraction of N ranged from 0.025–0.070 for the ashes, and the mobile fraction of N was composed of 13.1–39.6% as NO3−, up to 0.011% as NO2−, 0.004–86.9% as NH3/NH4+, and up to 49.4% as dissolved organic N. The speciation indicates possible nitrification occurring during the wildfires, but suggests no substantial denitrification. The mobile fraction of N was 11.3 ± 7.4 times that of organic carbon (OC), due to the high mobility of inorganic N (mainly NO3− and NH3/NH4+) and nitrogenous organic compounds. The mobile N fraction was associated with redox reactions of iron during wildfires, and was regulated by the redox reactivity of OC. N mobility in the ashes was lower than in control soils, potentially due to the transformation in the speciation of N. However, the total amount of mobile N was increased by wildfire, with the amount of increase being closely related to the severity of wildfires. Overall, wildfires lead to more mobile N, including both organic and inorganic N regulated by redox reactions and severity of wildfires, with subsequent concerns for water quality and water/wastewater treatment processes.
{"title":"Mobility of nitrogen in ashes and soils impacted by wildfires in northern California and Nevada","authors":"Travis Numan, Abrar Shahriar, Srinidhi Lokesh, Anil Timilsina, Sudarshan Basyal, Yasaman Raeofy, Simon R. Poulson, Vera Samburova and Yu Yang","doi":"10.1039/D5EM00533G","DOIUrl":"10.1039/D5EM00533G","url":null,"abstract":"<p >Wildfires drastically alter biogeochemical cycling and transport of nutrient elements, including nitrogen (N), from terrestrial to aquatic ecosystems, with the potential to degrade water quality. Understanding the impact of characteristics of wildfire-derived ashes and burned soils on the mobilization of N is essential for effectively managing wildfires and mitigating adverse effects on watershed functions. This study quantified the mobility of N in soils and ashes influenced by wildfires in the northern California/Nevada region in the western United States (Dixie, Beckwourth, and Caldor fires) and the impact of soil/ash characteristics. The mobile fraction of N ranged from 0.025–0.070 for the ashes, and the mobile fraction of N was composed of 13.1–39.6% as NO<small><sub>3</sub></small><small><sup>−</sup></small>, up to 0.011% as NO<small><sub>2</sub></small><small><sup>−</sup></small>, 0.004–86.9% as NH<small><sub>3</sub></small>/NH<small><sub>4</sub></small><small><sup>+</sup></small>, and up to 49.4% as dissolved organic N. The speciation indicates possible nitrification occurring during the wildfires, but suggests no substantial denitrification. The mobile fraction of N was 11.3 ± 7.4 times that of organic carbon (OC), due to the high mobility of inorganic N (mainly NO<small><sub>3</sub></small><small><sup>−</sup></small> and NH<small><sub>3</sub></small>/NH<small><sub>4</sub></small><small><sup>+</sup></small>) and nitrogenous organic compounds. The mobile N fraction was associated with redox reactions of iron during wildfires, and was regulated by the redox reactivity of OC. N mobility in the ashes was lower than in control soils, potentially due to the transformation in the speciation of N. However, the total amount of mobile N was increased by wildfire, with the amount of increase being closely related to the severity of wildfires. Overall, wildfires lead to more mobile N, including both organic and inorganic N regulated by redox reactions and severity of wildfires, with subsequent concerns for water quality and water/wastewater treatment processes.</p>","PeriodicalId":74,"journal":{"name":"Environmental Science: Processes & Impacts","volume":" 1","pages":" 196-203"},"PeriodicalIF":3.9,"publicationDate":"2025-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2026/em/d5em00533g?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145699468","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Samsung Raja Daimari, Rabu Ranjan Changmai and Manabendra Sarma
Isoprene, the most predominant biogenically emitted volatile organic compound (VOC) in the atmosphere, undergoes oxidation to yield hydroxymethyl methyl α-lactone (HMML) in the presence of NO. While the particle-phase chemistry of HMML has been explored to some extent, its gas-phase chemistry remains unexplored. In this study, we have performed an extensive computational investigation involving the thermodynamics and kinetics of the oxidation reaction of HMML in the gas phase, driven by hydroxy radicals (OH) and chlorine (Cl) atoms. The oxidation of HMML proceeds via hydrogen atom abstraction reactions, all of which are exothermic in nature. The potential energy profile diagram representing all possible reaction routes has been constructed using CCSD(T)//M06-2X/6-311++G(d,p) level of theory. The rate coefficients of all the reaction pathways were estimated using the variational transition state theory (VTST), corrected with a tunneling factor, across the 200 to 400 K temperature range at the M06-2X/6-311++G(d,p) level of theory. At 298 K, the atmospheric lifetime of HMML was determined to be 9.6 days in the marine boundary layer (MBL) and 62.5 days in the normal tropospheric conditions. Furthermore, the degradation study of the product radicals revealed various end products with much higher reactivity and shorter lifetimes, such as diketones, α, β-unsaturated carboxylic acids, formic acid, pyruvic acid, methylglyoxal, and dioxopropanoic acid.
{"title":"Atmospheric oxidation of hydroxymethyl methyl α-lactone (HMML), initiated by OH radicals and Cl atoms","authors":"Samsung Raja Daimari, Rabu Ranjan Changmai and Manabendra Sarma","doi":"10.1039/D5EM00635J","DOIUrl":"10.1039/D5EM00635J","url":null,"abstract":"<p >Isoprene, the most predominant biogenically emitted volatile organic compound (VOC) in the atmosphere, undergoes oxidation to yield hydroxymethyl methyl α-lactone (HMML) in the presence of NO. While the particle-phase chemistry of HMML has been explored to some extent, its gas-phase chemistry remains unexplored. In this study, we have performed an extensive computational investigation involving the thermodynamics and kinetics of the oxidation reaction of HMML in the gas phase, driven by hydroxy radicals (OH) and chlorine (Cl) atoms. The oxidation of HMML proceeds <em>via</em> hydrogen atom abstraction reactions, all of which are exothermic in nature. The potential energy profile diagram representing all possible reaction routes has been constructed using CCSD(T)//M06-2X/6-311++G(d,p) level of theory. The rate coefficients of all the reaction pathways were estimated using the variational transition state theory (VTST), corrected with a tunneling factor, across the 200 to 400 K temperature range at the M06-2X/6-311++G(d,p) level of theory. At 298 K, the atmospheric lifetime of HMML was determined to be 9.6 days in the marine boundary layer (MBL) and 62.5 days in the normal tropospheric conditions. Furthermore, the degradation study of the product radicals revealed various end products with much higher reactivity and shorter lifetimes, such as diketones, α, β-unsaturated carboxylic acids, formic acid, pyruvic acid, methylglyoxal, and dioxopropanoic acid.</p>","PeriodicalId":74,"journal":{"name":"Environmental Science: Processes & Impacts","volume":" 1","pages":" 173-185"},"PeriodicalIF":3.9,"publicationDate":"2025-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145626905","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Guillermo Samperio-Ramos, Oscar Hernández-Sánchez, Jorge A. Velásquez-Aristizábal, Víctor F. Camacho-Ibar, Silvia Pajares, Aaron Gutiérrez, Ariadna Aldrich and Francisco J. Cervantes
Understanding the microbial processes involved in ammonium loss in highly productive marine systems is crucial for reconstructing the global nitrogen cycle. This study is the first to examine the anaerobic ammonium oxidation coupled with dissimilatory Fe(III) reduction (Feammox) and the abundance of iron-reducing bacteria (IRB) in a seagrass-dominated coastal lagoon exposed to two contrasting upwelling conditions. Potential Feammox rates varied from 6.0 to 39.2 mg N per m2 per day and were positively correlated with the abundance of IRB (Acidomicrobiaceae A6 spp. and Geobacteraceae spp.), suggesting that IRB mediated the Feammox process. The limited impact of near-mouth productivity conditions on Feammox activity and IRB was largely inherent to sediment type (eelgrass or adjacent bare bottom) and station-specific, depending on the degree of confinement relative to the nearby ocean. The partial least squares structural equation modeling approach revealed that dissimilatory Fe(III) reduction exerted a direct effect on potential Feammox rates, while upwelling conditions indirectly influenced the process through sediment characteristics. The contribution of Feammox to total ammonium loss exceeded 60% and increased with the distance from the mouth of the lagoon. A minimum of 3.7 ± 0.5 mg N per m2 per day was catalyzed by electron acceptors besides Fe(III), highlighting the co-occurrence of alternative chemoautotrophic pathways in ammonium removal. Furthermore, an average loss of 38.4 ± 6.7 t N per year was attributed to the anaerobic ammonium oxidation processes, accounting for 5.1 ± 1.6% of the annual oceanic N transported into the lagoon. These findings extend our current understanding of N and Fe cycles in coastal environments linked to eastern boundary upwelling systems.
了解高产海洋系统中氨损失的微生物过程对于重建全球氮循环至关重要。本研究首次研究了在海草为主的沿海泻湖暴露于两种不同的上升流条件下,厌氧氨氧化与异化铁(III)还原(Feammox)结合以及铁还原细菌(IRB)的丰度。Feammox的潜在速率在6.0 ~ 39.2 mg N / m2 / d之间变化,并且与IRB (Acidomicrobiaceae A6 spp.和Geobacteraceae spp.)的丰度呈正相关,表明IRB介导了Feammox过程。近口生产力条件对Feammox活性和IRB的有限影响主要取决于沉积物类型(大叶藻或邻近裸底)和特定站点,这取决于相对于附近海洋的限制程度。偏最小二乘结构方程建模方法表明,异化Fe(III)还原直接影响潜在的Feammox速率,而上升流条件通过沉积物特征间接影响这一过程。Feammox对总铵损失的贡献超过60%,并且随着离泻湖口的距离增加而增加。除Fe(III)外,电子受体每天至少催化3.7±0.5 mg N / m2,突出了在除铵过程中多种化学自养途径的共存。此外,厌氧氨氧化过程每年平均损失38.4±6.7 t N,占每年进入泻湖的海洋N的5.1±1.6%。这些发现扩展了我们目前对与东部边界上升流系统有关的沿海环境中N和Fe循环的理解。
{"title":"Regulation of ammonium loss under contrasting upwelling conditions: sensitivity of Feammox to environmental drivers","authors":"Guillermo Samperio-Ramos, Oscar Hernández-Sánchez, Jorge A. Velásquez-Aristizábal, Víctor F. Camacho-Ibar, Silvia Pajares, Aaron Gutiérrez, Ariadna Aldrich and Francisco J. Cervantes","doi":"10.1039/D5EM00257E","DOIUrl":"10.1039/D5EM00257E","url":null,"abstract":"<p >Understanding the microbial processes involved in ammonium loss in highly productive marine systems is crucial for reconstructing the global nitrogen cycle. This study is the first to examine the anaerobic ammonium oxidation coupled with dissimilatory Fe(<small>III</small>) reduction (Feammox) and the abundance of iron-reducing bacteria (IRB) in a seagrass-dominated coastal lagoon exposed to two contrasting upwelling conditions. Potential Feammox rates varied from 6.0 to 39.2 mg N per m<small><sup>2</sup></small> per day and were positively correlated with the abundance of IRB (<em>Acidomicrobiaceae</em> A6 spp. and <em>Geobacteraceae</em> spp.), suggesting that IRB mediated the Feammox process. The limited impact of near-mouth productivity conditions on Feammox activity and IRB was largely inherent to sediment type (eelgrass or adjacent bare bottom) and station-specific, depending on the degree of confinement relative to the nearby ocean. The partial least squares structural equation modeling approach revealed that dissimilatory Fe(<small>III</small>) reduction exerted a direct effect on potential Feammox rates, while upwelling conditions indirectly influenced the process through sediment characteristics. The contribution of Feammox to total ammonium loss exceeded 60% and increased with the distance from the mouth of the lagoon. A minimum of 3.7 ± 0.5 mg N per m<small><sup>2</sup></small> per day was catalyzed by electron acceptors besides Fe(<small>III</small>), highlighting the co-occurrence of alternative chemoautotrophic pathways in ammonium removal. Furthermore, an average loss of 38.4 ± 6.7 t N per year was attributed to the anaerobic ammonium oxidation processes, accounting for 5.1 ± 1.6% of the annual oceanic N transported into the lagoon. These findings extend our current understanding of N and Fe cycles in coastal environments linked to eastern boundary upwelling systems.</p>","PeriodicalId":74,"journal":{"name":"Environmental Science: Processes & Impacts","volume":" 1","pages":" 240-255"},"PeriodicalIF":3.9,"publicationDate":"2025-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145754777","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lake Kivu is distinguished by several unique characteristics that set it apart from other lakes around the world. One of the notable features is a temperature increase with depth, accompanied by unusual staircase-like patterns in the thermodynamic and environmental parameters. The lake also experiences suppressed vertical mixing due to stable density stratification, with its deep water separated from the surface water by chemoclines. Additionally, Lake Kivu contains high concentrations of dissolved methane (CH4) and carbon dioxide (CO2), and there is no standard method for measuring their concentrations. The lake is also recognized as a renewable energy source due to its continuous supply of CH4, and it demonstrates a quadruple-diffusive convection transport mechanism. These factors contribute to the lake's distinctiveness. The occurrence of catastrophic limnic eruptions at Lakes Nyos and Monoun, along with the structural similarities between these lakes and Lake Kivu, raises serious concerns about the likelihood of a similar disaster in Lake Kivu in the future. The scale of threats posed in Lake Kivu can be orders of magnitude greater than the other two lakes, given its 3000 times larger size, two to four orders of magnitude higher content of dissolved CO2, containing substantial quantities of CH4 in addition to CO2 in solution, and holding a far denser population living in its much wider catchment area. The present study aims to assess the probability of a future gas outburst in this giant lake by numerical modeling of its hydrodynamics over the next half a millennium. The turbulent transport is calculated using the extended k–ε model. An implicit Euler method is applied to solve the governing partial differential equations on a vertically staggered grid system, discretized using a finite-volume approach. Since the previously calibrated model successfully reproduces the measured lake profiles, the same tuned parameter values are used in this study, assuming a stable steady-state condition in the future. The results of our simulations effectively address common concerns regarding the risk of a gas burst in the lake due to buoyancy instability-triggered overturn and/or supersaturation of the water column.
{"title":"On the risk of a dissolved gas-triggered limnic eruption in Lake Kivu","authors":"Hadi Saboorian-Jooybari and Hassan Hassanzadeh","doi":"10.1039/D5EM00513B","DOIUrl":"10.1039/D5EM00513B","url":null,"abstract":"<p >Lake Kivu is distinguished by several unique characteristics that set it apart from other lakes around the world. One of the notable features is a temperature increase with depth, accompanied by unusual staircase-like patterns in the thermodynamic and environmental parameters. The lake also experiences suppressed vertical mixing due to stable density stratification, with its deep water separated from the surface water by chemoclines. Additionally, Lake Kivu contains high concentrations of dissolved methane (CH<small><sub>4</sub></small>) and carbon dioxide (CO<small><sub>2</sub></small>), and there is no standard method for measuring their concentrations. The lake is also recognized as a renewable energy source due to its continuous supply of CH<small><sub>4</sub></small>, and it demonstrates a quadruple-diffusive convection transport mechanism. These factors contribute to the lake's distinctiveness. The occurrence of catastrophic limnic eruptions at Lakes Nyos and Monoun, along with the structural similarities between these lakes and Lake Kivu, raises serious concerns about the likelihood of a similar disaster in Lake Kivu in the future. The scale of threats posed in Lake Kivu can be orders of magnitude greater than the other two lakes, given its 3000 times larger size, two to four orders of magnitude higher content of dissolved CO<small><sub>2</sub></small>, containing substantial quantities of CH<small><sub>4</sub></small> in addition to CO<small><sub>2</sub></small> in solution, and holding a far denser population living in its much wider catchment area. The present study aims to assess the probability of a future gas outburst in this giant lake by numerical modeling of its hydrodynamics over the next half a millennium. The turbulent transport is calculated using the extended <em>k</em>–<em>ε</em> model. An implicit Euler method is applied to solve the governing partial differential equations on a vertically staggered grid system, discretized using a finite-volume approach. Since the previously calibrated model successfully reproduces the measured lake profiles, the same tuned parameter values are used in this study, assuming a stable steady-state condition in the future. The results of our simulations effectively address common concerns regarding the risk of a gas burst in the lake due to buoyancy instability-triggered overturn and/or supersaturation of the water column.</p>","PeriodicalId":74,"journal":{"name":"Environmental Science: Processes & Impacts","volume":" 1","pages":" 56-73"},"PeriodicalIF":3.9,"publicationDate":"2025-11-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2026/em/d5em00513b?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145792700","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Carla Comadran-Casas, Philip J. Salter, Ayo Ogundero, Fabien Cholet, Victor Barridor Giadom, William T. Sloan, Cindy J. Smith, Adrian M. Bass, John MacDonald, Cise Unluer and Caroline Gauchotte-Lindsay
Microbial-Induced Calcite Precipitation (MICP) is an effective bioremediation method for heavy metals, which often co-exist with organic pollutants in soils. Organic pollutants such as hydrocarbons inhibit soil urea hydrolysis critical in MICP whilst its feasibility in such enviroments is poorly understood. This study presents an investigation on the potential of biostimulation and bioaugmentation of MICP in soils polluted by polycyclic aromatic hydrocarbons (PAH) and their effect on ureolyisis at cell and enzyme level. Biostimulation of urea hydrolysis by soil autochthonous ureolytic bacteria was not detected over 62 days. Flow cytometry revealed Sproposarcina pasteurii at initial OD600 = 0.01 was able to grow in soil water extracts of increasing hydrocarbon concentration (TOC = 0.035–35 mg L−1), showing no negative effects on cell membrane stability. Urease activity assays in soil water extracts inoculated with S. pasteurii (OD600 = 0.01 and 1) and soybean Glycine Max urease enzyme (1 and 100 g L−1) indicated hydrocarbons negative effect on cell and enzyme urease activity was dependant on hydrocarbon and cell/enzyme concentrations, indicating the mechanism of inhibition was competitive. Glycine Max urease activity was unaffected at 100 g L−1 but at 1 g L−1 decreased with increasing hydrocarbon concentration up to 61%, whilst S. pasteurii urease activity (OD600 = 1) readily decreased at the lowest hydrocarbon concentration (TOC = 0.35 mg L−1) to an overall reduction of 31% at the highest TOC concentration. Bioaugmentation of S. pasteurii (OD600 = 1) inoculated in the soil matrix successfully hydrolysed urea within 24 h. These results evidence for the first time the ability of model MICP bacteria S. pasteurii to grow and maintain relevant metabolic ureolytic activity in soils significantly polluted by PAH.
微生物诱导方解石沉淀(MICP)是一种有效的重金属修复方法,重金属通常与土壤中的有机污染物共存。有机污染物如碳氢化合物抑制土壤尿素水解是MICP的关键,而其在这种环境下的可行性尚不清楚。本研究旨在探讨多环芳烃(PAH)污染土壤中MICP的生物刺激和生物增强作用及其在细胞和酶水平上对尿素溶解的影响。土壤原生溶尿菌对尿素水解的生物刺激超过62天。流式细胞术显示,当初始OD600 = 0.01时,巴氏梭菌能够在增加碳氢化合物浓度(TOC = 0.035 ~ 35 mg L-1)的土壤水提物中生长,对细胞膜稳定性无负面影响。土壤水提物接种巴氏杆菌(OD600 = 0.01和1)和大豆甘氨酸Max脲酶(1和100 g L-1)对细胞脲酶活性的影响表明,烃类对细胞脲酶活性的影响与烃类浓度和细胞/酶浓度有关,表明抑制机制是竞争性的。甘氨酸Max脲酶活性在100 g L-1时不受影响,但在1 g L-1时随着碳氢化合物浓度的增加而下降,最高可达61%,而巴斯德氏链球菌脲酶活性(OD600 = 1)在最低碳氢化合物浓度(TOC = 0.35 mg L-1)下迅速下降,在最高TOC浓度下总体下降31%。在土壤基质中接种巴氏杆菌(S. pasteurii, OD600 = 1), 24 h内成功水解尿素,首次证明了模型MICP细菌在多环环烃污染严重的土壤中能够生长并维持相关代谢溶尿活性。
{"title":"Feasibility of microbial-induced calcite precipitation in soils polluted by hydrocarbons","authors":"Carla Comadran-Casas, Philip J. Salter, Ayo Ogundero, Fabien Cholet, Victor Barridor Giadom, William T. Sloan, Cindy J. Smith, Adrian M. Bass, John MacDonald, Cise Unluer and Caroline Gauchotte-Lindsay","doi":"10.1039/D5EM00531K","DOIUrl":"10.1039/D5EM00531K","url":null,"abstract":"<p >Microbial-Induced Calcite Precipitation (MICP) is an effective bioremediation method for heavy metals, which often co-exist with organic pollutants in soils. Organic pollutants such as hydrocarbons inhibit soil urea hydrolysis critical in MICP whilst its feasibility in such enviroments is poorly understood. This study presents an investigation on the potential of biostimulation and bioaugmentation of MICP in soils polluted by polycyclic aromatic hydrocarbons (PAH) and their effect on ureolyisis at cell and enzyme level. Biostimulation of urea hydrolysis by soil autochthonous ureolytic bacteria was not detected over 62 days. Flow cytometry revealed <em>Sproposarcina pasteurii</em> at initial OD<small><sub>600</sub></small> = 0.01 was able to grow in soil water extracts of increasing hydrocarbon concentration (TOC = 0.035–35 mg L<small><sup>−1</sup></small>), showing no negative effects on cell membrane stability. Urease activity assays in soil water extracts inoculated with <em>S. pasteurii</em> (OD<small><sub>600</sub></small> = 0.01 and 1) and soybean <em>Glycine Max</em> urease enzyme (1 and 100 g L<small><sup>−1</sup></small>) indicated hydrocarbons negative effect on cell and enzyme urease activity was dependant on hydrocarbon and cell/enzyme concentrations, indicating the mechanism of inhibition was competitive. <em>Glycine Max</em> urease activity was unaffected at 100 g L<small><sup>−1</sup></small> but at 1 g L<small><sup>−1</sup></small> decreased with increasing hydrocarbon concentration up to 61%, whilst <em>S. pasteurii</em> urease activity (OD<small><sub>600</sub></small> = 1) readily decreased at the lowest hydrocarbon concentration (TOC = 0.35 mg L<small><sup>−1</sup></small>) to an overall reduction of 31% at the highest TOC concentration. Bioaugmentation of <em>S. pasteurii</em> (OD<small><sub>600</sub></small> = 1) inoculated in the soil matrix successfully hydrolysed urea within 24 h. These results evidence for the first time the ability of model MICP bacteria <em>S. pasteurii</em> to grow and maintain relevant metabolic ureolytic activity in soils significantly polluted by PAH.</p>","PeriodicalId":74,"journal":{"name":"Environmental Science: Processes & Impacts","volume":" 1","pages":" 112-125"},"PeriodicalIF":3.9,"publicationDate":"2025-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2026/em/d5em00531k?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145547427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
L. Joëlle Kubeneck, Giulia Fantappiè, Luiza Notini, Katherine A. Rothwell, Laurel K. ThomasArrigo and Ruben Kretzschmar
The transformation and stability of iron (Fe) minerals in coastal sediments are closely linked to the sulfur (S) cycle, influencing the fate of nutrients, carbon, and contaminants. However, in situ studies of these interactions in coastal sediments remain limited. We investigated the transformation of lepidocrocite, goethite, and mackinawite in three intertidal field plots with contrasting Fe and S biogeochemistry. Fe minerals were enriched with 57Fe and mixed with the sediment, allowing close contact with the other inorganic and organic components of the sediment. After 8 weeks, transformation products were assessed using 57Fe Mössbauer spectroscopy. Regular porewater analysis complemented solid-phase analyses, supporting the understanding of transformation pathways and extents. Under low-sulfide, Fe-reducing conditions, lepidocrocite did not transform to more crystalline Fe-oxides such as goethite or magnetite. Instead, ∼20% of the lepidocrocite transformed, mostly into a disordered Fe-phase, due to reductive dissolution and a small extent of sulfidation. Goethite, in contrast, remained apparently unchanged under the same conditions. These results indicate that both Fe-oxides may persist during extended anoxic periods under Fe-reducing conditions in coastal sediments and thus may influence elemental cycles. However, in sulfidic environments, lepidocrocite and goethite transformed into amorphous, nonstoichiometric Fe–sulfide and greigite. We hypothesize that amorphous Fe–sulfide precipitated first, later transforming into greigite; a potential precursor of pyrite formation. This is further supported by the transformation of synthetic mackinawite into greigite under high sulfide conditions, suggesting a sulfidation pathway that may eventually lead to pyrite formation in coastal sediments.
{"title":"Interplay of Fe and S biogeochemistry shapes in situ iron mineral transformations in contrasting intertidal sediments","authors":"L. Joëlle Kubeneck, Giulia Fantappiè, Luiza Notini, Katherine A. Rothwell, Laurel K. ThomasArrigo and Ruben Kretzschmar","doi":"10.1039/D5EM00213C","DOIUrl":"10.1039/D5EM00213C","url":null,"abstract":"<p >The transformation and stability of iron (Fe) minerals in coastal sediments are closely linked to the sulfur (S) cycle, influencing the fate of nutrients, carbon, and contaminants. However, <em>in situ</em> studies of these interactions in coastal sediments remain limited. We investigated the transformation of lepidocrocite, goethite, and mackinawite in three intertidal field plots with contrasting Fe and S biogeochemistry. Fe minerals were enriched with <small><sup>57</sup></small>Fe and mixed with the sediment, allowing close contact with the other inorganic and organic components of the sediment. After 8 weeks, transformation products were assessed using <small><sup>57</sup></small>Fe Mössbauer spectroscopy. Regular porewater analysis complemented solid-phase analyses, supporting the understanding of transformation pathways and extents. Under low-sulfide, Fe-reducing conditions, lepidocrocite did not transform to more crystalline Fe-oxides such as goethite or magnetite. Instead, ∼20% of the lepidocrocite transformed, mostly into a disordered Fe-phase, due to reductive dissolution and a small extent of sulfidation. Goethite, in contrast, remained apparently unchanged under the same conditions. These results indicate that both Fe-oxides may persist during extended anoxic periods under Fe-reducing conditions in coastal sediments and thus may influence elemental cycles. However, in sulfidic environments, lepidocrocite and goethite transformed into amorphous, nonstoichiometric Fe–sulfide and greigite. We hypothesize that amorphous Fe–sulfide precipitated first, later transforming into greigite; a potential precursor of pyrite formation. This is further supported by the transformation of synthetic mackinawite into greigite under high sulfide conditions, suggesting a sulfidation pathway that may eventually lead to pyrite formation in coastal sediments.</p>","PeriodicalId":74,"journal":{"name":"Environmental Science: Processes & Impacts","volume":" 12","pages":" 3903-3916"},"PeriodicalIF":3.9,"publicationDate":"2025-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/em/d5em00213c?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145538557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Prashant Srivastava, Mitzi Bolton, Naomi J. Boxall, Sonia Mayakaduwage, Avanthi Igalavithana, John L. Rayner and Greg B. Davis
Globally, recycling of otherwise waste materials into new products is desired. End-of-life tyres are increasingly incorporated into new pavement materials but leaching of entrained chemicals from such products is not well quantified. Chemical concentrations in runoff from pavements may pose environmental and human health risks. High liquid–solid ratio, batch-agitated leaching is standard practice for assessing leachability and hazards of chemicals-of-potential-concern in contaminated soil and wastes but is not reflective of important exposure scenarios and may mislead. A new static surface leaching procedure (SSLP) is introduced that is more representative of chemical leaching from pavement reuse materials whilst in contact with rainfall/runoff water. SSLP was evaluated over 2–14 d intervals against batch-agitated leaching for two rubberised pavement products containing 10-fold different proportions of crumbed end-of-life tyres. Although, batch leaching showed high mass removal of 1,3-diphenylguanidine (1,3-DPG, 34%) and hexamethoxymethylmelamine (HMMM, 30%), both batch- and SSLP-leached concentrations of 1,3-DPG, HMMM and N1-(4-methylpentan-2-yl)-N4-phenylbenzene-1,4-diamine quinone (6PPD-Q) were below ECOSAR-predicted toxicity thresholds for fish and daphnids. SSLP highlighted differences in chemical leachability based on rubber content of pavement products and offers a method applicable to other scenarios, such as PFAS leaching from concrete/asphalt pavements. The SSLP was shown to approximate one-dimensional leaching from the surface of the pavement and to be dominated by diffusive processes, thus yielding a simple repeatable approach.
{"title":"A novel method for assessing chemical leaching from surface water–pavement interactions applied to recycled-tyre reuse products","authors":"Prashant Srivastava, Mitzi Bolton, Naomi J. Boxall, Sonia Mayakaduwage, Avanthi Igalavithana, John L. Rayner and Greg B. Davis","doi":"10.1039/D5EM00516G","DOIUrl":"10.1039/D5EM00516G","url":null,"abstract":"<p >Globally, recycling of otherwise waste materials into new products is desired. End-of-life tyres are increasingly incorporated into new pavement materials but leaching of entrained chemicals from such products is not well quantified. Chemical concentrations in runoff from pavements may pose environmental and human health risks. High liquid–solid ratio, batch-agitated leaching is standard practice for assessing leachability and hazards of chemicals-of-potential-concern in contaminated soil and wastes but is not reflective of important exposure scenarios and may mislead. A new static surface leaching procedure (SSLP) is introduced that is more representative of chemical leaching from pavement reuse materials whilst in contact with rainfall/runoff water. SSLP was evaluated over 2–14 d intervals against batch-agitated leaching for two rubberised pavement products containing 10-fold different proportions of crumbed end-of-life tyres. Although, batch leaching showed high mass removal of 1,3-diphenylguanidine (1,3-DPG, 34%) and hexamethoxymethylmelamine (HMMM, 30%), both batch- and SSLP-leached concentrations of 1,3-DPG, HMMM and <em>N</em><small><sup>1</sup></small>-(4-methylpentan-2-yl)-<em>N</em><small><sup>4</sup></small>-phenylbenzene-1,4-diamine quinone (6PPD-Q) were below ECOSAR-predicted toxicity thresholds for fish and daphnids. SSLP highlighted differences in chemical leachability based on rubber content of pavement products and offers a method applicable to other scenarios, such as PFAS leaching from concrete/asphalt pavements. The SSLP was shown to approximate one-dimensional leaching from the surface of the pavement and to be dominated by diffusive processes, thus yielding a simple repeatable approach.</p>","PeriodicalId":74,"journal":{"name":"Environmental Science: Processes & Impacts","volume":" 1","pages":" 149-159"},"PeriodicalIF":3.9,"publicationDate":"2025-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2026/em/d5em00516g?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145562065","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}