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Classical and Entangled Two-Photon Absorption of Microbial Rhodopsin KR2 and Its Red-Shifted Mutant 微生物紫红质KR2及其红移突变体的经典和纠缠双光子吸收
IF 0.8 4区 化学 Q4 CHEMISTRY, PHYSICAL Pub Date : 2025-10-16 DOI: 10.1134/S0036024425702073
P. A. Kusochek, V. V. Belov, V. R. Aslopovsky, S. A. Kazantsev, A. V. Bochenkova

Microbial rhodopsin KR2 is a transmembrane photoactive protein that transports sodium ions across the membrane using light energy. KR2 is a promising tool for optogenetics, enabling optical control of neuronal activity. Here we explore the possibility of two-photon S0S1 excitation of KR2 and its red-shifted double mutant KR2 P219T/S254A with entangled and classical photon pairs. By using molecular dynamics simulations, a high-level XMCQDPT2-based QM/MM approach, and the sum-over-states formalism for calculating two-photon absorption (TPA) strengths, we show that the microbial rhodopsins intrinsically exhibit large classical TPA cross-sections due to a pronounced electron density redistribution upon the S0S1 transition. The nonclassical contribution turns out to be considerably larger than the classical counterpart in both KR2 and its double mutant, and the quantum entanglement of photon pairs further increases their transition strengths by one order of magnitude. Our calculations reproduce the experimental red shift in the absorption of the double mutant of KR2 and, while revealing only a slight increase in the classical TPA cross-section in KR2 P219T/S254A, show that its entangled TPA strength decreases. These variations, induced by alterations in the local electric field of the protein caused by the two amino acid replacements, can be attributed to changes in the permanent dipole moments between the ground and excited states. Our results demonstrate high tunability of the nonlinear photophysical properties of microbial rhodopsins, which can be used for the rational design of more efficient optogenetic tools upon two-photon excitation.

微生物紫红质KR2是一种跨膜光活性蛋白,利用光能在细胞膜上运输钠离子。KR2是一个很有前途的光遗传学工具,使神经元活动的光学控制。本文探讨了KR2及其红移双突变体KR2 P219T/S254A在纠缠光子对和经典光子对下双光子S0→S1激发的可能性。通过分子动力学模拟、基于高水平xmcqdpt2的QM/MM方法和用于计算双光子吸收(TPA)强度的态和形式,我们发现微生物紫红质本质上表现出大的经典TPA横截面,这是由于在S0→S1跃迁时明显的电子密度重新分布。在KR2及其双突变体中,非经典的贡献比经典的大得多,并且光子对的量子纠缠进一步提高了它们的跃迁强度一个数量级。我们的计算再现了KR2双突变体吸收中的实验红移,虽然KR2 P219T/S254A中经典TPA截面仅略有增加,但其纠缠TPA强度下降。这些变化是由两种氨基酸替换引起的蛋白质局部电场的变化引起的,可以归因于基态和激发态之间永久偶极矩的变化。我们的研究结果表明微生物紫红质的非线性光物理性质具有高度的可调性,这可以用于合理设计更有效的双光子激发光遗传工具。
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引用次数: 0
Amounts of Reduced Metal on the Surfaces of Catalysts for the Liquid-Phase Hydrogenation of Unsaturated Hydrocarbons 不饱和烃液相加氢催化剂表面金属的还原量
IF 0.8 4区 化学 Q4 CHEMISTRY, PHYSICAL Pub Date : 2025-10-16 DOI: 10.1134/S0036024425701766
A. V. Afineevskii, D. A. Prozorov, T. Yu. Osadchaya, K. A. Nikitin, D. V. Smirnov

Catalysts based on nickel, cobalt, and platinum deposited on coal and silica gel are synthesized and investigated. Energy dispersive X-ray analysis (EDX) is performed to determine the distribution of metals in the bulk phase. The atomic ratio in subsurface layers is measured via X-ray photoelectron spectroscopy (XPS). It is shown that the concentration of metal on a surface can differ significantly from its content in the bulk phase. Profiles of the distribution of metal from the surface to the depth of a catalyst granule are constructed. Textural characteristics of the studied catalysts are obtained. A way of determining the number of active sites on a catalyst’s surface is proposed based on EDX, XPS, and the textural characteristics of a sample. The calculated numbers of metal atoms are compared to the amount of reactive hydrogen adsorbed on active centers. Results allow determination of the effect synthesis has on the content of active sites on the surface of a catalyst.

研究了煤和硅胶上沉积镍、钴和铂的催化剂。利用能量色散x射线分析(EDX)来确定金属在体相中的分布。利用x射线光电子能谱(XPS)测量了亚表层的原子比。结果表明,表面上金属的浓度与其在体相中的含量有很大的不同。构造了金属从表面到催化剂颗粒深度的分布曲线。得到了所研究催化剂的结构特征。提出了一种基于EDX, XPS和样品的结构特征来确定催化剂表面活性位点数量的方法。计算出的金属原子数与吸附在活性中心上的活性氢的量进行了比较。结果可以确定合成对催化剂表面活性位点含量的影响。
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引用次数: 0
Using Microwave Radiation to Intensify Crystallization in the Synthesis of ZSM-5 Type Zeolite 微波强化结晶合成ZSM-5型沸石
IF 0.8 4区 化学 Q4 CHEMISTRY, PHYSICAL Pub Date : 2025-10-16 DOI: 10.1134/S0036024425701857
E. S. Severgina, D. A. Kravchuk, T. A. Kamanova, R. N. Rumyantsev, N. E. Gordina

The possibility of using UHF energy in the synthesis of ZSM-5 type zeolite with a reduced content of Na+ ions intended for the catalytic pyrolysis of biomass is investigated to find solutions for enhancing energy efficiency (shortening the period of crystallization) while preserving the morphological features of specimens, along with their textural and catalytic characteristics. The research subject was ZSM-5 type high-silica zeolite with a modulus of 50.0. The objects of study are the physico-chemical patterns that occur while microwaving a mixture of initial components and their subsequent hydrothermal crystallization. X-ray phase analysis and IR spectroscopy are used to determine the optimum time of exposure to microwaves for a mixture of initial ingredients and their subsequent crystallization, while keeping the content of the crystalline phase at a level of 80% or more. The results in this work are of interest from a fundamental viewpoint and can be used in optimizing existing industrial technologies.

研究了利用超高频能量合成用于催化热解生物质的Na+离子含量降低的ZSM-5型沸石的可能性,以寻找提高能量效率(缩短结晶周期)的解决方案,同时保留样品的形态特征,以及它们的结构和催化特性。研究对象为模数为50.0的ZSM-5型高硅沸石。研究的对象是在微波处理初始组分的混合物及其随后的水热结晶时发生的物理化学模式。x射线相分析和红外光谱用于确定初始成分混合物及其后续结晶的最佳微波暴露时间,同时保持结晶相的含量在80%或以上。这项工作的结果从基本观点来看是有趣的,可以用于优化现有的工业技术。
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引用次数: 0
An Approach to Description of Isotropic Hyperfine Interaction Constants in the Fluorinated Nitrobenzene and Nitrophenol Radical Anions: DFT Calculations vs. Experiment 描述氟化硝基苯和硝基酚自由基阴离子中各向同性超精细相互作用常数的方法:DFT计算与实验
IF 0.8 4区 化学 Q4 CHEMISTRY, PHYSICAL Pub Date : 2025-10-16 DOI: 10.1134/S0036024425702000
Fatih Ucun, Yasin Emir Işık, Özgecan Tiryaki

In this study, electron paramagnetic resonance (EPR) hyperfine coupling constants (hfccs) of fluorinated nitrobenzene and nitrophenol radical anions were calculated using Density Functional Theory (DFT) with B3LYP functional at 6-31+G(d), 6-31++G(d,p), LanL2DZ, LanL2MB, EPR-II, and EPR-III basis sets. The obtained results were evaluated based on their agreement with the experimental data. The LanL2DZ was identified as the optimal basis set. Using this set, the EPR and Natural Bond Orbital (NBO) analysis of all the radical anions were performed. The simulated EPR spectra, generated using the calculated hfccs, were found to be in good agreement with the experimental spectra. A theoretical equation for the hfcc of fluorine atom was proposed and validated against multiple experimental datasets with high accuracy.

本研究利用密度泛函理论(DFT)计算了B3LYP在6-31+G(d)、6-31++G(d,p)、LanL2DZ、LanL2MB、EPR- ii和EPR- iii基集上的电子顺磁共振(EPR)超精细耦合常数(hfccs)。根据所得结果与实验数据的一致性,对所得结果进行了评价。确定LanL2DZ为最优基集。利用该集对所有自由基阴离子进行了EPR和自然键轨道(NBO)分析。利用计算的氢氟化碳生成的模拟EPR光谱与实验光谱吻合较好。提出了氟原子hfcc的理论方程,并通过多组实验数据进行了高精度验证。
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引用次数: 0
Synthesis and Efficacy Study of Graphene Oxide for Removal of Radioactive Iodine I-131 In Vitro and In Vivo 氧化石墨烯体外和体内去除放射性碘I-131的合成及效果研究
IF 0.8 4区 化学 Q4 CHEMISTRY, PHYSICAL Pub Date : 2025-10-16 DOI: 10.1134/S003602442570205X
Aws Z. Abdulmajeed, AlaUlddin M. Mahdi, Lubna W. Mohammed, Liqaa Hussain, Luma D. Ibrahim, Ali M. Salih

Iodine-131 is frequently used in nuclear medicine for both diagnosis and treatment of thyroid conditions. Given that it’s radioactive and potentially linked to thyroid cancer, patients usually undergo monitoring for a week to avoid harm from the radioactive iodine. Graphene oxide’s electrical and mechanical traits have led to its widespread study in biomedicine. Its adsorption process utilizes its large surface area, porous structure, and functional groups that enable attractants to bind. This research employed the modified Hammer method to synthesize and characterize graphene oxide, utilizing it to remove iodine both in the laboratory and in living subjects. Results showed the produced graphene oxide structures were nanoscale, thus increasing the surface available for adsorption. The lab tests on adsorption showed they followed the Langmuir model, with optimal adsorption at 50 mg graphene oxide, pH 7.4, 37°C, and a 35-min contact time. Moreover, the results revealed graphene oxide did not negatively affect the rabbits’ liver or kidney functions, and the clearance rate observed in the living subjects was 71.95%.

碘-131在核医学中经常用于甲状腺疾病的诊断和治疗。考虑到它是放射性的,可能与甲状腺癌有关,患者通常要接受一周的监测,以避免放射性碘的伤害。氧化石墨烯的电学和力学特性使其在生物医学领域得到了广泛的研究。它的吸附过程利用了它的大表面积、多孔结构和使引诱剂结合的官能团。本研究采用改进的Hammer方法合成并表征氧化石墨烯,利用其在实验室和活体中去除碘。结果表明,制备的氧化石墨烯具有纳米级结构,从而增加了吸附表面的可用性。实验室吸附测试表明,它们遵循Langmuir模型,在50 mg氧化石墨烯、pH值7.4、37°C和35分钟接触时间下具有最佳吸附。此外,结果显示氧化石墨烯对家兔的肝肾功能没有负面影响,在活体中观察到的清除率为71.95%。
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引用次数: 0
Xerogels and Nanopowders Al2O3–ZrO2 and Al2O3–[ZrYb]O2 for Sorption of Anions Al2O3 - zro2和Al2O3 - [ZrYb]O2吸附阴离子的干凝胶和纳米粉体
IF 0.8 4区 化学 Q4 CHEMISTRY, PHYSICAL Pub Date : 2025-10-16 DOI: 10.1134/S0036024425701894
N. E. Vakhrushev, I. I. Mikhalenko, A. A. Il’icheva, A. A. Konovalov

The results of our study of the sorption of the anionic dye methylene orange (MO) and hexavalent chromium oxy ions from aqueous solutions using mono-, bi-, and three-component systems Al2O3 (A), ZrO2 (Z), xAl2O3−ZrO2 (xAZ), and xAl2O3−[ZrYb]O2 (xAZYb) with different heat treatments after sol-gel synthesis are presented. The influence of the sorbent composition and heat treatment temperature of 180, 500, and 800°C on the extraction of sorbate anions was determined based on the parameters of sorption isotherms and adsorption kinetics at 25°C. The Henry constants of sorption of the methyl orange dye (L/m2) on the samples calcinated at 500°C decrease linearly with the increasing content of A. The xAZYb samples showed better dye and dichromate ion sorption characteristics than xAZ. The studied systems, which are precursors of alumina–zirconia ceramics, can be used in the adsorption removal of pollutant anions from the aquatic environment.

本文介绍了溶胶-凝胶合成后,采用单组分、双组分和三组分体系Al2O3 (A)、ZrO2 (Z)、xAl2O3−ZrO2 (xAZ)和xAl2O3−[ZrYb]O2 (xAZYb)等不同热处理方法对阴离子染料亚甲基橙(MO)和六价铬氧离子的吸附研究结果。根据吸附等温线和25℃吸附动力学参数,确定了吸附剂组成和热处理温度180、500、800℃对山梨酸阴离子提取的影响。500℃煅烧样品对甲基橙染料的吸附Henry常数(L/m2)随a含量的增加而线性减小,xAZYb样品对染料和重铬酸盐离子的吸附性能优于xAZ。所研究的体系是氧化铝-氧化锆陶瓷的前驱体,可用于吸附去除水生环境中的污染物阴离子。
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引用次数: 0
Synergize Electron Localization-Interface Engineering to Precisely Assemble Ag Nanoparticles/Graphene/Cu with Surface-Enhanced Raman Scattering 协同电子定位-界面工程与表面增强拉曼散射精确组装银纳米颗粒/石墨烯/铜
IF 0.8 4区 化学 Q4 CHEMISTRY, PHYSICAL Pub Date : 2025-10-16 DOI: 10.1134/S0036024425702024
Deyi Kong, Yuehong Lv, Yan Jin, Baoshan Hu, Qian Yang

Silver nanoparticles (AgNPs) are most often used as surface-enhanced Raman scattering (SERS) substrates thanks to their surface plasmon resonance, but conventional chemical reduction methods suffer from particle aggregation, poor controllability, and pollution. In this work, we have employed graphene/Cu as a platform for the precision assembly of AgNPs to create AgNPs/graphene/Cu (AgNPs/Gr/Cu), leveraging electron localization and interfacial engineering to promote the controlled reduction of Ag+ and subsequent Ag deposition. The formation kinetics of AgNPs were systematically investigated and modulated via adjusting solvent polarity, precursor concentration, reaction time and temperature, to establish the correlation between AgNPs morphology and synthesis parameters. Specifically, the hexagonal lattice of graphene facilitated the epitaxial growth of Ag (111), thereby favoring the formation of hexagonal AgNPs. Additionally, the electron transfer between Ag and graphene altered the charge distribution on Ag surface, affecting the deposition/arrangement of Ag atoms and effectively preventing the oxidation/aggregation of AgNPs. The fabricated AgNPs/Gr/Cu manifested superior performance in SERS.

银纳米粒子(AgNPs)由于其表面等离子体共振而最常被用作表面增强拉曼散射(SERS)衬底,但传统的化学还原方法存在粒子聚集、可控性差和污染等问题。在这项工作中,我们利用石墨烯/Cu作为AgNPs精密组装的平台来创建AgNPs/石墨烯/Cu (AgNPs/Gr/Cu),利用电子定位和界面工程来促进Ag+的可控还原和随后的Ag沉积。通过调节溶剂极性、前驱体浓度、反应时间和温度,系统地研究了AgNPs的形成动力学,建立了AgNPs形态与合成参数之间的关系。具体来说,石墨烯的六边形晶格促进了Ag(111)的外延生长,从而有利于六边形AgNPs的形成。此外,Ag和石墨烯之间的电子转移改变了Ag表面的电荷分布,影响了Ag原子的沉积/排列,有效地阻止了AgNPs的氧化/聚集。制备的AgNPs/Gr/Cu在SERS中表现出优异的性能。
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引用次数: 0
Facile Synthesis of CuO–Mn2CuO4 Composite Materials and Catalysis for Hydrogen Evolution from Water Electrolysis CuO-Mn2CuO4复合材料的简易合成及电解析氢催化
IF 0.8 4区 化学 Q4 CHEMISTRY, PHYSICAL Pub Date : 2025-10-16 DOI: 10.1134/S0036024425701985
Y. Z. Song, X. W. Zhang, S. H. Yuan, C. Y. Zhang, J. J. Zhu

CuO–Mn2CuO4 composite materials for tailored hydrogen evolution were successfully synthesized using a simple method. The synthesis process used Cu(NO3)2⋅3H2O and MnCO3 as precursors. The resulting composites were comprehensively characterized using a suite of analytical techniques, including scanning electron microscopy, transmission electron microscopy, X-ray photoelectron spectroscopy, and X‑ray diffraction. The electrochemical performance of the CuO–Mn2CuO4 composites was systematically evaluated through cyclic voltammetry and linear sweep voltammetry, while electrochemical impedance spectroscopy was used to investigate the hydrogen evolution reaction at the electrode interface. The composite demonstrated a 0.31 V reduction in overpotential compared to the bare glassy carbon electrode, with a hydrogen evolution rate of approximately 0.76 mL min–1 cm–2, with a current density of 100 mA cm–2, which was approximately three times that of the GCE.

用一种简单的方法成功合成了CuO-Mn2CuO4定制析氢复合材料。以Cu(NO3)2⋅3H2O和MnCO3为前驱体进行合成。利用扫描电子显微镜、透射电子显微镜、X射线光电子能谱和X射线衍射等一系列分析技术对所得复合材料进行了全面表征。采用循环伏安法和线性扫描伏安法对CuO-Mn2CuO4复合材料的电化学性能进行了系统评价,并采用电化学阻抗谱法对电极界面处的析氢反应进行了研究。与裸露的玻碳电极相比,该复合材料的过电位降低了0.31 V,析氢速率约为0.76 mL min-1 cm-2,电流密度为100 mA cm-2,约为GCE的三倍。
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引用次数: 0
Cyclophosphamide Adsorption on the Surface of Polyethylene Glycol: A Computational Study 聚乙二醇表面吸附环磷酰胺的计算研究
IF 0.8 4区 化学 Q4 CHEMISTRY, PHYSICAL Pub Date : 2025-10-16 DOI: 10.1134/S0036024425701936
M. Qomi

In this research, the performance of polyethylene glycol (PEG) as a nanocarrier for the targeted drug delivery of cyclophosphamide (CLP) was investigated by density functional theory, infra-red, frontier molecular orbital and natural bonding orbital computations. The achieved results showed the interaction of CLP with PEG is experimentally feasible. The calculated thermodynamic parameters showed CLP adsorption process is spontaneous, exothermic and two sided. The impact of temperature and solvent on the interactions was also checked out and the results showed the presence of water as the solvent does not affect the interactions. Besides, by increasing of temperature CLP interactions with adsorbent become weaker indicating PEG can be employed as a temperature sensitive drug carrier. The increasing of dipole moment and also the decline of chemical hardness and bandgap showed when CLP adsorbs on the surface of PEG its chemical reactivity and bioavailibity improves substantially. The natural bonding orbital results demonstrated CLP interaction with PEG has a physisorption nature.

本研究通过密度泛函理论、红外光谱、前沿分子轨道和自然键轨道计算研究了聚乙二醇(PEG)作为靶向递送环磷酰胺(CLP)药物的纳米载体的性能。实验结果表明CLP与PEG的相互作用在实验上是可行的。计算的热力学参数表明,CLP吸附过程是自发的、放热的、双面的。研究了温度和溶剂对相互作用的影响,结果表明水作为溶剂的存在不影响相互作用。此外,随着温度的升高,CLP与吸附剂的相互作用减弱,表明PEG可以作为温度敏感的药物载体。偶极矩增大,化学硬度和带隙减小,表明CLP吸附在PEG表面后,其化学反应性和生物利用度明显提高。自然成键轨道结果表明CLP与PEG的相互作用具有物理吸附性质。
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引用次数: 0
Exploration of the Dioxouranium Complex LUO2: 3D Supramolecular Architecture, Hirshfeld Surface Analysis, and Electrochemical Properties 二氧铕配合物LUO2的探索:三维超分子结构、Hirshfeld表面分析和电化学性质
IF 0.8 4区 化学 Q4 CHEMISTRY, PHYSICAL Pub Date : 2025-10-16 DOI: 10.1134/S0036024425701900
Sabrina Bendia, Kamel Ouari, Moufida Merzougui, Souad Dekar, Riadh Bourzami

Abstract—In continuation of previous published works on the synthesis and crystallographic characterization of dioxouranium complexes with symmetrical NNOO tetradentate Schiff bases, we report herein deep investigations of the supramolecular features, and electrochemical properties of the studied crystal. This includes 3D molecular Hirshfeld surface analysis and visualization of the resulting three-dimensional supramolecular network. The analysis identifies H⋅⋅⋅C/C⋅⋅⋅H contacts as the main contributors to crystal packing, accounting for 34.7%. The 3D supramolecular network of LUO2 is formed through the overlap of chains, resulting in a porous structure along the (Oa) direction. The pores are uniform, non-circular, and approximately 9 Å in size along the shorter diagonal. In addition, the electrochemical properties of the uranyl complex, studied via cyclic voltammetry, revealed a quasi-reversible U(VI)/U(V) redox process with a half-wave potential (E1/2) of –1126 mV vs. SCE in DMF. Measurements using a glassy carbon electrode indicated diffusion-controlled redox behavior. Thermal studies indicate that the complex is non-volatile and a high thermal stability.

摘要:继前人关于对称NNOO四齿席夫碱二氧铕配合物的合成和晶体学表征的研究工作之后,我们对所研究晶体的超分子特征和电化学性质进行了深入的研究。这包括三维分子赫希菲尔德表面分析和由此产生的三维超分子网络可视化。分析发现,H⋅⋅C/C⋅⋅H触点是导致晶体堆积的主要因素,占34.7%。通过链的重叠形成LUO2的三维超分子网络,形成沿(Oa)方向的多孔结构。孔隙均匀,非圆形,沿较短的对角线大小约为9 Å。此外,通过循环伏安法研究了铀酰配合物的电化学性质,发现在DMF中与SCE发生了准可逆的U(VI)/U(V)氧化还原过程,半波电位(E1/2)为-1126 mV。测量使用玻碳电极表明扩散控制氧化还原行为。热研究表明,该配合物不易挥发,具有较高的热稳定性。
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引用次数: 0
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Russian Journal of Physical Chemistry A
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