Pub Date : 2025-03-13DOI: 10.1007/s11224-025-02483-w
Luca Sironi, Giovanni Macetti, Margherita Vacchini, Leonardo Lo Presti
Average crystallographic structures may disguise more complex packing modes, such as commensurate modulations that originate from coherent librational distortions of the lattice. These can be easily overlooked, with striking implications on the understanding of intermolecular interactions, provided that the crystal is described in terms of colorless symmetries. As shown in the 1970s by Kołakowski, lattice modulations with strong librational components can be understood in terms of colored group operations applied to pseudovector quantities, like rotation momenta. Here, we employ Kołakowski’s concepts of dynamic symmetry to computationally predict modulated distortions in crystalline acrylic acid. We show that periodic lattice distortions may indeed originate from a low-frequency phonon instability at the (Gamma) point of the first Brillouin zone. The packing of the corresponding molecular libration momenta is analogue to an antiferromagnetic ordering in the Icbam Shubnikov group, which can be also described as a commensurate modulation emerging from (3 + 1)D Imcb(00γ)0s0 superspace structure with γ = 1. In the reciprocal lattice, the distortions produce exceptions to the systematic extinction rules, due to the scattering at commensurate Bragg points that derive from the reduced colorless symmetry. This evidence offers an easy strategy to look for such phenomena in X-ray experiments, also taking advantage of the sensitivity of modern area detectors. Implications on the onset of phase transitions in organic crystals are also discussed.
{"title":"First-principles study of dynamic symmetry in acrylic acid","authors":"Luca Sironi, Giovanni Macetti, Margherita Vacchini, Leonardo Lo Presti","doi":"10.1007/s11224-025-02483-w","DOIUrl":"10.1007/s11224-025-02483-w","url":null,"abstract":"<div><p>Average crystallographic structures may disguise more complex packing modes, such as commensurate modulations that originate from coherent librational distortions of the lattice. These can be easily overlooked, with striking implications on the understanding of intermolecular interactions, provided that the crystal is described in terms of colorless symmetries. As shown in the 1970s by Kołakowski, lattice modulations with strong librational components can be understood in terms of colored group operations applied to pseudovector quantities, like rotation momenta. Here, we employ Kołakowski’s concepts of dynamic symmetry to computationally predict modulated distortions in crystalline acrylic acid. We show that periodic lattice distortions may indeed originate from a low-frequency phonon instability at the <span>(Gamma)</span> point of the first Brillouin zone. The packing of the corresponding molecular libration momenta is analogue to an antiferromagnetic ordering in the <i>I</i><sub><i>c</i></sub><i>bam</i> Shubnikov group, which can be also described as a commensurate modulation emerging from (3 + 1)D <i>Imcb</i>(00γ)0<i>s</i>0 superspace structure with <i>γ</i> = 1. In the reciprocal lattice, the distortions produce exceptions to the systematic extinction rules, due to the scattering at commensurate Bragg points that derive from the reduced colorless symmetry. This evidence offers an easy strategy to look for such phenomena in X-ray experiments, also taking advantage of the sensitivity of modern area detectors. Implications on the onset of phase transitions in organic crystals are also discussed.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 5","pages":"1791 - 1800"},"PeriodicalIF":2.2,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s11224-025-02483-w.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145121909","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-13DOI: 10.1007/s11224-025-02481-y
Istvan Hargittai
In a 1999 article of Structural Chemistry, the recently deceased J. Fraser Stoddart and two associates surveyed the interplay between the synthesis of functioning supramolecular systems and their X-ray crystallographic investigation. Furthermore, they charted the anticipated development and necessary work for creating “intelligent” materials with predetermined functions. This was part of Stoddart’s discoveries in creating molecular machines that brought him a share of the chemistry Nobel Prize in 2016.
{"title":"J. Fraser Stoddart (1942–2024) Nobel laureate for molecular machines—author in Structural Chemistry","authors":"Istvan Hargittai","doi":"10.1007/s11224-025-02481-y","DOIUrl":"10.1007/s11224-025-02481-y","url":null,"abstract":"<div><p>In a 1999 article of <i>Structural Chemistry</i>, the recently deceased J. Fraser Stoddart and two associates surveyed the interplay between the synthesis of functioning supramolecular systems and their X-ray crystallographic investigation. Furthermore, they charted the anticipated development and necessary work for creating “intelligent” materials with predetermined functions. This was part of Stoddart’s discoveries in creating molecular machines that brought him a share of the chemistry Nobel Prize in 2016.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 3","pages":"1135 - 1137"},"PeriodicalIF":2.1,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143904846","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
<div><p>The detection and elimination of dangerous pollutants from the atmosphere are imminent due to environmental and human health hazards. The adsorption behaviors, selectivity, sensitivity, and conductivity of the pristine and decorated fullerene-like X<sub>12</sub>Y<sub>12</sub> (C<sub>24</sub>, B<sub>12</sub>N<sub>12</sub>, Al<sub>12</sub>N<sub>12</sub>, B<sub>12</sub>P<sub>12</sub>, and Al<sub>12</sub>P<sub>12</sub>) nanocages with Ni atom in sensing the hazardous CO and NO gases have been investigated through the density functional theory (DFT) and time-dependent density functional theory (TD-DFT) computations. Our results demonstrated that the Ni-doped fullerene-like X<sub>12</sub>Y<sub>12</sub> exhibited a higher selectivity to CO and NO adsorption compared to pristine X<sub>12</sub>Y<sub>12</sub> nanocages. The CO and NO are chemisorbed on Ni@C<sub>24</sub>, Ni@B<sub>12</sub>N<sub>12</sub>, Ni@B<sub>12</sub>P<sub>12</sub>, and Ni@Al<sub>12</sub>N<sub>12</sub> nanocages with high adsorption energies up to − 3.658 and − 3.823 eV, respectively. These nanocages are expected to be explored and developed for CO and NO elimination, capture, and sequestration. The reliability of the results was verified at both B3LYP/6-311G(d,p) and wB97XD/6-311G(d,p) functionals. Nevertheless, the CO and NO gases are only weakly chemisorbed on the Ni@Al<sub>12</sub>P<sub>12</sub> with adsorption energies of − 0.838 eV and − 0.674 eV, respectively. The reduction in the energy gap of NO@Ni@Al<sub>12</sub>P<sub>12</sub> is found to be − 35.300%, proving high sensitivity of the Ni@Al<sub>12</sub>P<sub>12</sub> toward the NO gas molecule. High sensitivity and rapid recovery time (97.136 s and 0.178 s) affirmed the potency of Ni@Al<sub>12</sub>P<sub>12</sub> nanocage as a promising sensing material for CO and NO gas molecules. The desorption of CO and NO gas molecules from Ni@B<sub>12</sub>P<sub>12</sub> takes place within a reasonable time of 2.403 s and 1.750 s at a temperature of 800 K, respectively. As a result, the Ni@B<sub>12</sub>P<sub>12</sub> nanocage may achieve potential applications for sensing CO and NO gases from vehicle exhaust and factory emissions. Thermodynamic parameters demonstrated the spontaneous exothermic nature of Ni@X<sub>12</sub>Y<sub>12</sub> nanocages before and after the adsorption of CO and NO gases. New energy states were visualized through the spin-polarized partial density of states (PDOS) analysis, indicating the effect of adsorbing CO and NO molecules on the electronic characteristics of the Ni@X<sub>12</sub>Y<sub>12</sub> nanocages. More precisely, the CO and NO adsorption behavior at Ni@X<sub>12</sub>Y<sub>12</sub> is well correlated with the molecular electrostatic potential (MESP), recovery times, quantum theory of atoms in molecules (QTAIM), and non-covalent interaction index (NCI). The presence of further peaks in the infrared spectra demonstrated the apparent impact of the adsorption process on the characteristics of the N
{"title":"Adsorption and gas sensing performances of pristine and Ni-decorated fullerene/inorganic fullerene-like nanocages X12Y12 (X = Al, B and Y = N, P) nanocages toward CO and NO gases: DFT investigations","authors":"Azizah Abdelaziz Algreiby, Safaa Abdel Aal Abdelrazik","doi":"10.1007/s11224-025-02472-z","DOIUrl":"10.1007/s11224-025-02472-z","url":null,"abstract":"<div><p>The detection and elimination of dangerous pollutants from the atmosphere are imminent due to environmental and human health hazards. The adsorption behaviors, selectivity, sensitivity, and conductivity of the pristine and decorated fullerene-like X<sub>12</sub>Y<sub>12</sub> (C<sub>24</sub>, B<sub>12</sub>N<sub>12</sub>, Al<sub>12</sub>N<sub>12</sub>, B<sub>12</sub>P<sub>12</sub>, and Al<sub>12</sub>P<sub>12</sub>) nanocages with Ni atom in sensing the hazardous CO and NO gases have been investigated through the density functional theory (DFT) and time-dependent density functional theory (TD-DFT) computations. Our results demonstrated that the Ni-doped fullerene-like X<sub>12</sub>Y<sub>12</sub> exhibited a higher selectivity to CO and NO adsorption compared to pristine X<sub>12</sub>Y<sub>12</sub> nanocages. The CO and NO are chemisorbed on Ni@C<sub>24</sub>, Ni@B<sub>12</sub>N<sub>12</sub>, Ni@B<sub>12</sub>P<sub>12</sub>, and Ni@Al<sub>12</sub>N<sub>12</sub> nanocages with high adsorption energies up to − 3.658 and − 3.823 eV, respectively. These nanocages are expected to be explored and developed for CO and NO elimination, capture, and sequestration. The reliability of the results was verified at both B3LYP/6-311G(d,p) and wB97XD/6-311G(d,p) functionals. Nevertheless, the CO and NO gases are only weakly chemisorbed on the Ni@Al<sub>12</sub>P<sub>12</sub> with adsorption energies of − 0.838 eV and − 0.674 eV, respectively. The reduction in the energy gap of NO@Ni@Al<sub>12</sub>P<sub>12</sub> is found to be − 35.300%, proving high sensitivity of the Ni@Al<sub>12</sub>P<sub>12</sub> toward the NO gas molecule. High sensitivity and rapid recovery time (97.136 s and 0.178 s) affirmed the potency of Ni@Al<sub>12</sub>P<sub>12</sub> nanocage as a promising sensing material for CO and NO gas molecules. The desorption of CO and NO gas molecules from Ni@B<sub>12</sub>P<sub>12</sub> takes place within a reasonable time of 2.403 s and 1.750 s at a temperature of 800 K, respectively. As a result, the Ni@B<sub>12</sub>P<sub>12</sub> nanocage may achieve potential applications for sensing CO and NO gases from vehicle exhaust and factory emissions. Thermodynamic parameters demonstrated the spontaneous exothermic nature of Ni@X<sub>12</sub>Y<sub>12</sub> nanocages before and after the adsorption of CO and NO gases. New energy states were visualized through the spin-polarized partial density of states (PDOS) analysis, indicating the effect of adsorbing CO and NO molecules on the electronic characteristics of the Ni@X<sub>12</sub>Y<sub>12</sub> nanocages. More precisely, the CO and NO adsorption behavior at Ni@X<sub>12</sub>Y<sub>12</sub> is well correlated with the molecular electrostatic potential (MESP), recovery times, quantum theory of atoms in molecules (QTAIM), and non-covalent interaction index (NCI). The presence of further peaks in the infrared spectra demonstrated the apparent impact of the adsorption process on the characteristics of the N","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 5","pages":"1801 - 1827"},"PeriodicalIF":2.2,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145121908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-13DOI: 10.1007/s11224-025-02477-8
Dmitri O. Charkin, Vasili Yu. Grishaev, Oleg I. Siidra, Alexander M. Banaru, Sergey M. Aksenov
Three new nickel-based representatives of the so-called “layered hydroselenite” family have been characterized by single-crystal X-ray diffraction. In addition to the (enH2)[Ni(HSeO3)2Br2], the last missing member of the ethylenediammonium – transition metal hydroselenite-halide family, we were able to characterize the first members of a new family of compounds based on the N,N′-dimethylethylenediammonium cations, (dmedaH2)[Ni(HSeO3)2X2], X = Cl and Br. We compare the structural peculiarities of layered hydroselenites “stuffed” by the (enH2)2+ and (dmedaH2)2+ cations and predict existence of new series in this peculiar layered family.
所谓的“层状亚硒酸盐”家族的三个新的镍基代表已经被单晶x射线衍射表征。除了(enH2)[Ni(HSeO3)2Br2](乙烯二铵-过渡金属氢亚硒酸卤化物家族的最后一个缺失成员)外,我们能够表征基于N,N ' -二甲基乙烯二铵阳离子的新化合物家族的第一个成员,(dmedaH2)[Ni(HSeO3)2X2], X = Cl和Br。我们比较了被(enH2)2+和(dmedaH2)2+阳离子“填充”的层状亚硒酸盐的结构特点,并预测在这个特殊的层状家族中存在新的系列。
{"title":"Synthesis and structural characterization of new layered hydroselenites (enH2)[Ni(HSeO3)2Br2] and (dmedaH2)[Ni(HSeO3)2X2], X = Cl, Br","authors":"Dmitri O. Charkin, Vasili Yu. Grishaev, Oleg I. Siidra, Alexander M. Banaru, Sergey M. Aksenov","doi":"10.1007/s11224-025-02477-8","DOIUrl":"10.1007/s11224-025-02477-8","url":null,"abstract":"<div><p>Three new nickel-based representatives of the so-called “layered hydroselenite” family have been characterized by single-crystal X-ray diffraction. In addition to the (enH<sub>2</sub>)[Ni(HSeO<sub>3</sub>)<sub>2</sub>Br<sub>2</sub>], the last missing member of the ethylenediammonium – transition metal hydroselenite-halide family, we were able to characterize the first members of a new family of compounds based on the N,N′-dimethylethylenediammonium cations, (dmedaH<sub>2</sub>)[Ni(HSeO<sub>3</sub>)<sub>2</sub><i>X</i><sub>2</sub>], <i>X</i> = Cl and Br. We compare the structural peculiarities of layered hydroselenites “stuffed” by the (enH<sub>2</sub>)<sup>2+</sup> and (dmedaH<sub>2</sub>)<sup>2+</sup> cations and predict existence of new series in this peculiar layered family.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 5","pages":"1779 - 1790"},"PeriodicalIF":2.2,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145121880","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-12DOI: 10.1007/s11224-025-02475-w
Ahsan Farid, Jawaria Fatima, Eman Aldosari, Iqra Shahid, Asmat Ullah
The current global energy demands and environmental concerns have highlighted the potential of hydrogen as a crucial component of a sustainable energy strategy for the twenty-first century. This research employed first-principles computations to investigate the perovskite-type hydrides NaXH3 (X = Ni, Cu, Zn). The structural optimizations revealed negative formation energies, indicating their thermodynamic stability and synthesizability. The mechanical stability was studied using elastic constants, while the electronic properties were examined through band structures and partial densities of states, confirming their metallic nature. Bader partial charge analysis shed light on the charge transfer characteristics, and phonon dispersion curves demonstrated their dynamic stability. Importantly, these hydrides exhibit promising hydrogen storage capacities of 3.57, 3.38, and 3.31 wt% for NaXH3 (X = Ni, Cu, and Zn), respectively. This study represents a novel exploration of these perovskite hydrides, potentially paving the way for further advancements in hydrogen storage technologies.
{"title":"Exploring the physical properties of the perovskite-type hydrides NaXH3 (X = Ni, Cu, Zn) for hydrogen storage applications: A DFT study","authors":"Ahsan Farid, Jawaria Fatima, Eman Aldosari, Iqra Shahid, Asmat Ullah","doi":"10.1007/s11224-025-02475-w","DOIUrl":"10.1007/s11224-025-02475-w","url":null,"abstract":"<div><p>The current global energy demands and environmental concerns have highlighted the potential of hydrogen as a crucial component of a sustainable energy strategy for the twenty-first century. This research employed first-principles computations to investigate the perovskite-type hydrides NaXH<sub>3</sub> (X = Ni, Cu, Zn). The structural optimizations revealed negative formation energies, indicating their thermodynamic stability and synthesizability. The mechanical stability was studied using elastic constants, while the electronic properties were examined through band structures and partial densities of states, confirming their metallic nature. Bader partial charge analysis shed light on the charge transfer characteristics, and phonon dispersion curves demonstrated their dynamic stability. Importantly, these hydrides exhibit promising hydrogen storage capacities of 3.57, 3.38, and 3.31 wt% for NaXH<sub>3</sub> (X = Ni, Cu, and Zn), respectively. This study represents a novel exploration of these perovskite hydrides, potentially paving the way for further advancements in hydrogen storage technologies.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 5","pages":"1765 - 1777"},"PeriodicalIF":2.2,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145121888","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-08DOI: 10.1007/s11224-025-02468-9
Khayit Kh. Turaev, Yusufjon E. Nazarov, Abdukadir Kh. Tashkulov, Sherzod A. Kasimov, Bekmurod Kh. Alimnazarov, Jamshid M. Ashurov, Aziz B. Ibragimov, Takashiro Akitsu, Changkun Xia, Abul Monsur Showkot Hossain
Two novel complexes, [Ni(dipic)2](mea)2(1) and [(dipic)(Cl)(μ-Cl)Cu2(μ-Cl)(Cl)(dipic)](H2O) (2), were prepared from mixed ligand in which pyridine-2,6-dicarboxylic acid (PDC or dipicolinic acid, dipic) has reacted with monoethanolamine (MEA) and also hydrochloric acid, respectively. In the complex-1, the dipic ligand containing ONO' donating atoms acted as a monodentate and for complex-2, it was recognized as a neutral state, and both complexes were crystallized in the triclinic space group P ī. The structure of the two complexes was assigned based on elemental and spectroscopic analysis, and also X-ray crystallographic techniques, and finally, the Ni(II) complex confirmed distorted octahedral, and each of the binuclear Cu(II) complexes was also recognized as having the same structure. Hirshfeld surface analysis (HSA) was studied for both complexes as well. According to the analysis report, it expressed the significant intermolecular interactions in packing, with O••H/H••O interactions being the largest (50.9%) for complex-1 and Cl••H/H••Cl interactions (30.1%) followed by H••O/O •••H Interactions (29.8%) of complex-2.
{"title":"Synthesis of mononuclear Ni(II) and binuclear Cu(II) complexes from pyridine-2, crystal structure and Hirschfeld surface analysis, 6-dicarboxylic acid with monothenolamine and hydrochloric acid solution","authors":"Khayit Kh. Turaev, Yusufjon E. Nazarov, Abdukadir Kh. Tashkulov, Sherzod A. Kasimov, Bekmurod Kh. Alimnazarov, Jamshid M. Ashurov, Aziz B. Ibragimov, Takashiro Akitsu, Changkun Xia, Abul Monsur Showkot Hossain","doi":"10.1007/s11224-025-02468-9","DOIUrl":"10.1007/s11224-025-02468-9","url":null,"abstract":"<div><p>Two novel complexes, [Ni(dipic)<sub>2</sub>](mea)<sub>2</sub>(<b>1</b>) and [(dipic)(Cl)(μ-Cl)Cu<sub>2</sub>(μ-Cl)(Cl)(dipic)](H<sub>2</sub>O) (<b>2</b>), were prepared from mixed ligand in which pyridine-2,6-dicarboxylic acid (PDC or dipicolinic acid, dipic) has reacted with monoethanolamine (MEA) and also hydrochloric acid, respectively. In the complex-1, the dipic ligand containing ONO' donating atoms acted as a monodentate and for complex-2, it was recognized as a neutral state, and both complexes were crystallized in the triclinic space group <i>P</i> ī. The structure of the two complexes was assigned based on elemental and spectroscopic analysis, and also X-ray crystallographic techniques, and finally, the Ni(II) complex confirmed distorted octahedral, and each of the binuclear Cu(II) complexes was also recognized as having the same structure. Hirshfeld surface analysis (HSA) was studied for both complexes as well. According to the analysis report, it expressed the significant intermolecular interactions in packing, with O••H/H••O interactions being the largest (50.9%) for complex-1 and Cl••H/H••Cl interactions (30.1%) followed by H••O/O •••H Interactions (29.8%) of complex-2.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 5","pages":"1751 - 1763"},"PeriodicalIF":2.2,"publicationDate":"2025-03-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145121696","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-08DOI: 10.1007/s11224-025-02474-x
Ali Ghalibafi, Parvaneh Pakravan
Monomethyl fumarate (MMF) is a harmful substance which could be toxic for healthy cells. Hence, it is a useful drug for treatment of multiple sclerosis (MS). Considering these, its safe transportation to the targeted tissues (applying a suitable carrier) is needed. Thus, in this work, the possibility of using cavitand container-shaped capsule as well as a number of nanosheets (derived from B4C5N3 structure) for delivery and adsorption of MMF have been studied. The results have indicated that (except cavitand) the biggest values for Eads and for recovery time (τ) belong to MMF + AlB4C5N3 (− 18.04 eV, 17.68 s) and MMF + GaB4C5N3 (− 17.59 eV, 8.22 s), respectively. Therefore, in opposition to the other considered derivatives, both of those two nanosheets (AlB4C5N3 and GaB4C5N3) could be used as sorbents and also as carriers for delivery of the MMF drug. In addition, the results showed that the cavitand structure could be applied as a good capsule for trapping MMF, while it would not be able to sense the existence of this drug.
{"title":"Comparison of cavitand and B4C5N3 nanosheets for MMF delivery and detection","authors":"Ali Ghalibafi, Parvaneh Pakravan","doi":"10.1007/s11224-025-02474-x","DOIUrl":"10.1007/s11224-025-02474-x","url":null,"abstract":"<div><p>Monomethyl fumarate (MMF) is a harmful substance which could be toxic for healthy cells. Hence, it is a useful drug for treatment of multiple sclerosis (MS). Considering these, its safe transportation to the targeted tissues (applying a suitable carrier) is needed. Thus, in this work, the possibility of using cavitand container-shaped capsule as well as a number of nanosheets (derived from B<sub>4</sub>C<sub>5</sub>N<sub>3</sub> structure) for delivery and adsorption of MMF have been studied. The results have indicated that (except cavitand) the biggest values for <i>E</i><sub>ads</sub> and for recovery time (<i>τ</i>) belong to MMF + AlB<sub>4</sub>C<sub>5</sub>N<sub>3</sub> (− 18.04 eV, 17.68 s) and MMF + GaB<sub>4</sub>C<sub>5</sub>N<sub>3</sub> (− 17.59 eV, 8.22 s), respectively. Therefore, in opposition to the other considered derivatives, both of those two nanosheets (AlB<sub>4</sub>C<sub>5</sub>N<sub>3</sub> and GaB<sub>4</sub>C<sub>5</sub>N<sub>3</sub>) could be used as sorbents and also as carriers for delivery of the MMF drug. In addition, the results showed that the cavitand structure could be applied as a good capsule for trapping MMF, while it would not be able to sense the existence of this drug.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 4","pages":"1501 - 1512"},"PeriodicalIF":2.2,"publicationDate":"2025-03-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145163251","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-04DOI: 10.1007/s11224-025-02476-9
Istvan Hargittai
A 1973 paper described a stable C60 molecule of truncated icosahedral shape from Elena G. Galpern’s computations. It remained in the shadow until after the discovery of buckminsterfullerene in 1985. Ivan V. Stankevich contributed substantially to the computational study but his name did not figure among its authors. He was a pioneer in researching new allotropes of carbon.
1973年的一篇论文从Elena G. Galpern的计算中描述了一个稳定的截断二十面体形状的C60分子。直到1985年巴克敏斯特富勒烯被发现后,它才被隐藏起来。Ivan V. Stankevich对计算机研究做出了重大贡献,但他的名字并没有出现在作者之列。他是研究碳的新同素异形体的先驱。
{"title":"In the shadow’s shadow: Ivan V. Stankevich and C60","authors":"Istvan Hargittai","doi":"10.1007/s11224-025-02476-9","DOIUrl":"10.1007/s11224-025-02476-9","url":null,"abstract":"<div><p>A 1973 paper described a stable C<sub>60</sub> molecule of truncated icosahedral shape from Elena G. Galpern’s computations. It remained in the shadow until after the discovery of buckminsterfullerene in 1985. Ivan V. Stankevich contributed substantially to the computational study but his name did not figure among its authors. He was a pioneer in researching new allotropes of carbon.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 4","pages":"1531 - 1533"},"PeriodicalIF":2.2,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145162125","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-22DOI: 10.1007/s11224-025-02469-8
Faezeh Moniriyan, Seyyed Javad Sabounchei, Asieh Sedghi, Robert W. Gable
A new series of palladium(II) complexes with α-keto-stabilized phosphonium ylide ligands having a general formula [Pd(μ-X)(PPh3CHC(O)C6H4R)]2 [X = Br, R = m-OCH3 (C1), p-NO2 (C2), p-F (C3), X = Cl, R = m-OCH3 (C4)] was prepared. Also, a single-crystal X-ray diffraction study was performed for the compounds C1 and C4, which revealed a dimeric square-planar geometry around Pd(II) ions for these complexes. The spectroscopic and crystallographic results indicate that the phosphonium ylides coordinate to palladium(II) centers through the coordinatively active ylidic carbon atom and ortho-carbon atom of PPh3 phenyl ring (ortho-palladation). Using theoretical methods, density function theory (DFT) calculations at the BP86/def2-SVP level of theory, the structures of dimeric palladium(II) [Pd(μ-Br)(PPh3CHC(O)C6H4R)]2 [R = p-OCH3 (a), R = p-NO2 (b), p-F (c)] complexes were investigated. The strength and nature of donor − acceptor bonds between the phosphonium ylide (L) and Pd fragments were analyzed using natural bond orbital analysis (NBO).
制备了一系列新的α-酮稳定的磷酰化配体钯配合物,其通式为[Pd(μ-X)(PPh3CHC(O)C6H4R)]2 [X = Br, R = m-OCH3 (C1), p-NO2 (C2), p-F (C3), X = Cl, R = m-OCH3 (C4)]。此外,对化合物C1和C4进行了单晶x射线衍射研究,揭示了这些配合物在Pd(II)离子周围的二聚体方形平面几何结构。光谱学和晶体学结果表明,磷基化合物是通过PPh3苯基环的配位活性基碳原子和邻位碳原子与钯(II)中心配位的。采用理论方法,在BP86/def2-SVP水平上进行密度泛函理论(DFT)计算,研究了二聚体钯(II) [Pd(μ-Br)(PPh3CHC(O)C6H4R)]2 [R = p-OCH3 (a), R = p-NO2 (b), p-F (c)]配合物的结构。利用自然键轨道分析(NBO)分析了磷酰化(L)和钯片段之间供体-受体键的强度和性质。
{"title":"A comprehensive study on the synthesis, X-ray characterization, and theoretical investigation of new dimeric palladium(II) complexes of phosphonium ylides","authors":"Faezeh Moniriyan, Seyyed Javad Sabounchei, Asieh Sedghi, Robert W. Gable","doi":"10.1007/s11224-025-02469-8","DOIUrl":"10.1007/s11224-025-02469-8","url":null,"abstract":"<div><p>A new series of palladium(II) complexes with α-keto-stabilized phosphonium ylide ligands having a general formula [Pd(μ-X)(PPh<sub>3</sub>CHC(O)C<sub>6</sub>H<sub>4</sub>R)]<sub>2</sub> [X = Br, <i>R</i> = <i>m</i>-OCH<sub>3</sub> (<b>C1</b>),<i> p</i>-NO<sub>2</sub> (<b>C2</b>),<i> p</i>-F (<b>C3</b>), X = Cl, <i>R</i> = <i>m</i>-OCH<sub>3</sub> (<b>C4</b>)] was prepared. Also, a single-crystal X-ray diffraction study was performed for the compounds <b>C1</b> and <b>C4</b>, which revealed a dimeric square-planar geometry around Pd(II) ions for these complexes. The spectroscopic and crystallographic results indicate that the phosphonium ylides coordinate to palladium(II) centers through the coordinatively active ylidic carbon atom and ortho-carbon atom of PPh<sub>3</sub> phenyl ring (ortho-palladation). Using theoretical methods, density function theory (DFT) calculations at the BP86/def2-SVP level of theory, the structures of dimeric palladium(II) [Pd(μ-Br)(PPh<sub>3</sub>CHC(O)C<sub>6</sub>H<sub>4</sub>R)]<sub>2</sub> [<i>R</i> = <i>p</i>-OCH<sub>3</sub> (<b>a</b>), <i>R</i> = <i>p</i>-NO<sub>2</sub> (<b>b</b>), <i>p</i>-F (<b>c</b>)] complexes were investigated. The strength and nature of donor − acceptor bonds between the phosphonium ylide (L) and Pd fragments were analyzed using natural bond orbital analysis (NBO).</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 5","pages":"1739 - 1749"},"PeriodicalIF":2.2,"publicationDate":"2025-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145122270","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-21DOI: 10.1007/s11224-025-02473-y
Chao Huang, Tao Jiang, Ji-Hong Lu
The Schiff base condensation reaction between precursor diamine N,N'-bis(2-aminophenyl)-pyridine-2,6-dicarboxamide and 1,8-naphthyridine-2-carbaldehyde yielded a racemic compound (LP/LM), which was characterized by 1H/13C NMR, infrared spectroscopy, elemental analysis, and single crystal X-ray diffraction. Three complexes, [Hg2LI4] (1), [Hg2LBr4] (2), and [Hg2L2Cl4]‧2H2O (3) with different coordination configurations were obtained from the reaction of this compound with HgX2 (X = I−, Br−, and Cl−), respectively, and their crystal structures and coordination geometries were determined via single crystal X-ray diffraction techniques. Both 1 and 2 exist as dinuclear complexes with a 1:2 molar ratio of L and Hg(II), while 3 exists as a 44-membered metallamacrocycle with a 1:1 molar ratio of L and Hg(II). The structural diversity of these three complexes indicates that the counter anions have significant effects on the structural topology. In addition, the solid-state luminescence and the gas adsorption of these complexes towards methanol vapor at room temperature were investigated.
{"title":"Synthesis, structural diversity, and methanol vapor adsorption properties of three Hg(II) halide complexes derived from a helical Schiff base","authors":"Chao Huang, Tao Jiang, Ji-Hong Lu","doi":"10.1007/s11224-025-02473-y","DOIUrl":"10.1007/s11224-025-02473-y","url":null,"abstract":"<p>The Schiff base condensation reaction between precursor diamine <i>N</i>,<i>N'</i>-bis(2-aminophenyl)-pyridine-2,6-dicarboxamide and 1,8-naphthyridine-2-carbaldehyde yielded a racemic compound (<b>L</b><sup><b><i>P</i></b></sup>/<b>L</b><sup><b><i>M</i></b></sup>), which was characterized by <sup>1</sup>H/<sup>13</sup>C NMR, infrared spectroscopy, elemental analysis, and single crystal X-ray diffraction. Three complexes, [Hg<sub>2</sub><b>L</b>I<sub>4</sub>] (<b>1</b>), [Hg<sub>2</sub><b>L</b>Br<sub>4</sub>] (<b>2</b>), and [Hg<sub>2</sub><b>L</b><sub>2</sub>Cl<sub>4</sub>]‧2H<sub>2</sub>O (<b>3</b>) with different coordination configurations were obtained from the reaction of this compound with HgX<sub>2</sub> (X = I<sup>−</sup>, Br<sup>−</sup>, and Cl<sup>−</sup>), respectively, and their crystal structures and coordination geometries were determined via single crystal X-ray diffraction techniques. Both <b>1</b> and <b>2</b> exist as dinuclear complexes with a 1:2 molar ratio of <b>L</b> and Hg(II), while <b>3</b> exists as a 44-membered metallamacrocycle with a 1:1 molar ratio of <b>L</b> and Hg(II). The structural diversity of these three complexes indicates that the counter anions have significant effects on the structural topology. In addition, the solid-state luminescence and the gas adsorption of these complexes towards methanol vapor at room temperature were investigated.</p>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 5","pages":"1729 - 1737"},"PeriodicalIF":2.2,"publicationDate":"2025-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145122162","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}