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Cross-platform detection of epigenetic modifications from extracted chromatin in leucocytes from blood 血液白细胞中提取染色质的表观遗传修饰的跨平台检测
Pub Date : 2015-06-01 DOI: 10.1016/J.ANCR.2015.04.002
Zhongwu Zhou, Ii Hood Cho, Zhi Shan, J. Irudayaraj
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引用次数: 5
Cross-platform detection of epigenetic modifications from extracted chromatin in leucocytes from blood 血液白细胞中提取染色质的表观遗传修饰的跨平台检测
Pub Date : 2015-06-01 DOI: 10.1016/j.ancr.2015.04.002
Zhongwu Zhou , II-Hood Cho , Zhi Shan , Joseph Irudayaraj

Chromatin contains valuable epigenetic information comprising of both DNA and post translational histone modifications. Traditionally, detection of epigenetic modifications on DNA and histone proteins requires different and elaborate preparation steps. In this study we report on a facile and unique approach for the simultaneous detection and quantification of epigenetic modifications on DNA and histone proteins in one sample preparation step. Our novel one-pot technique consists of a chromatin extraction step from whole blood using bi-functional carboxyl-functionalized magnetic nanoparticles as solid-phase absorbents. Leucocytes enrichment from blood and chromatin extracted from the leucocytes by lysis was achieved with the same carboxyl-functionalized magnetic nanoparticles. The isolated chromatin was then eluted from the magnetic nanoparticles with PBS 1×. Using the eluted chromatin as substrate, we developed a quantitative method for simultaneous detection of epigenetic modifications on DNA and histone proteins by a biotin–streptavidin mediated enzyme-based immunosorbent assay (two-step EIA) on a 96-well plate. The simultaneous detection of epigenetic modifications on DNA and histone was validated by DNA-based EIA and histone-based Western blotting analysis performed separately with conventional protocols. By coupling cell separation and chromatin purification with a simple detection module, the global epigenetic information could be evaluated in less than 8 h in leucocytes from blood. Our simplified cross-platform approach can be used by most laboratories for multiplex detection, uses non-hazardous materials and could be integrated with microfabrication methods for onchip analysis.

染色质包含有价值的表观遗传信息,包括DNA和翻译后组蛋白修饰。传统上,检测DNA和组蛋白上的表观遗传修饰需要不同的和复杂的准备步骤。在这项研究中,我们报告了一种简单而独特的方法,用于在一个样品制备步骤中同时检测和定量DNA和组蛋白的表观遗传修饰。我们的新一锅技术包括从全血中提取染色质的步骤,使用双功能羧基功能化磁性纳米颗粒作为固相吸收剂。利用相同的羧基功能化磁性纳米颗粒,从血液中富集白细胞,并通过裂解从白细胞中提取染色质。然后用1x的PBS从磁性纳米颗粒中洗脱分离的染色质。使用洗脱的染色质作为底物,我们开发了一种定量方法,通过生物素-链亲和素介导的酶免疫吸附法(两步EIA)在96孔板上同时检测DNA和组蛋白的表观遗传修饰。同时检测DNA和组蛋白上的表观遗传修饰,采用基于DNA的EIA和基于组蛋白的Western blotting分析,分别采用常规方案进行验证。通过将细胞分离和染色质纯化与一个简单的检测模块相结合,可以在不到8小时的时间内评估血液白细胞的整体表观遗传信息。我们简化的跨平台方法可被大多数实验室用于多重检测,使用无害材料,并可与芯片上分析的微加工方法集成。
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引用次数: 5
Towards broadening thermospray flame furnace atomic absorption spectrometry: Influence of organic solvents on the analytical signal of magnesium 扩宽热喷涂火焰炉原子吸收光谱法:有机溶剂对镁分析信号的影响
Pub Date : 2015-06-01 DOI: 10.1016/J.ANCR.2015.02.002
E. Morzan, J. Stripeikis, M. Tudino
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引用次数: 2
Gas sensing properties of indium–gallium–zinc–oxide gas sensors in different light intensity 不同光强下铟镓锌氧化物气体传感器的气敏性能
Pub Date : 2015-06-01 DOI: 10.1016/j.ancr.2015.03.001
Kuen-Lin Chen , Guo-Jhen Jiang , Kai-Wei Chang , Jan-Han Chen , Chiu-Hsien Wu

We have successfully observed the change in indium–gallium–zinc–oxide (IGZO) gas sensor sensitivity by controlling the light emitting diode (LED) power under the same gas concentrations. The light intensity dependence of sensor properties is discussed. Different LED intensities obviously affected the gas sensor sensitivity, which decays with increasing LED intensity. High LED intensity decreases not only gas sensor sensitivity but also the response time (T90), response time constant (τres) and the absorption rate per second. Low intensity irradiated to sensor causes high sensitivity, but it needs larger response time. Similar results were also observed in other kinds of materials such as TiO2. According to the results, the sensing properties of gas sensors can be modulated by controlling the light intensity.

在相同的气体浓度下,通过控制发光二极管(LED)的功率,我们成功地观察到了铟镓锌氧化物(IGZO)气体传感器灵敏度的变化。讨论了传感器性能与光强的关系。不同LED强度对气体传感器的灵敏度有明显影响,随LED强度的增加而衰减。高LED强度不仅降低了气体传感器的灵敏度,而且降低了响应时间(T90)、响应时间常数(τres)和每秒吸收率。低强度辐射可提高传感器的灵敏度,但需要较长的响应时间。类似的结果也被观察到在其他种类的材料,如TiO2。根据研究结果,可以通过控制光强来调节气体传感器的传感性能。
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引用次数: 27
A submicron mesoporous silica for the determination of organosulphur in sea water 亚微米介孔二氧化硅测定海水中有机硫
Pub Date : 2015-06-01 DOI: 10.1016/j.ancr.2015.04.001
Awad Aqeel Al-rashdi

Organosulphur compounds were determined in seawater samples by gas chromatography using a pulse flame detection method. The analytical method involved the use of octyl-diol mesoporous silica as a replacement for organic solvents in the extraction and pre-concentration of organosulphur compounds from seawater samples based on the solid phase dispersion extraction technique. The detection limits were in the range 0.6–2 ng S/L, while the repeatability and reproducibility were 7–12% and 13–16% respectively. Relative standard deviations (%) for recovery of n-ethanthiol (n-EtSH), di-n-ethyl sulphide (n-Et2S) and di-n-ethyl disulphide (n-Et2S2) in spiked water samples were in the range 2.2–6.6% (at 0.5 μg/L level). Under the experimental conditions used, quantitative extraction of n-EtSH, n-Et2S and n-Et2S2 was achieved with recoveries ranging from 93% to 99%. The procedure has been successfully applied to organosulphur determination in seawater samples collected from Jeddah beach (West of Saudi Arabia).

采用气相色谱脉冲火焰检测法测定了海水样品中的有机硫化合物。该分析方法基于固相分散萃取技术,采用辛二醇介孔二氧化硅代替有机溶剂对海水样品中的有机硫化合物进行萃取和预富集。检出限为0.6 ~ 2 ng S/L,重复性和重现性分别为7 ~ 12%和13 ~ 16%。在0.5 μg/L水平下,加标水样中正乙醇(n-EtSH)、硫化物二乙酯(n-Et2S)和二硫化物二乙酯(n-Et2S2)的回收率的相对标准偏差(%)在2.2 ~ 6.6%之间。在实验条件下,n-EtSH、n-Et2S和n-Et2S2的萃取回收率在93% ~ 99%之间。该方法已成功应用于从吉达海滩(沙特阿拉伯西部)采集的海水样品中有机硫的测定。
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引用次数: 2
Development and applications of spectrophotometric methods for quantitative determination of caroverine in pharmaceutical pure and tablet formulations 分光光度法定量测定药物纯制剂和片剂中胡萝卜碱的研究与应用
Pub Date : 2015-06-01 DOI: 10.1016/J.ANCR.2015.03.004
A. Raza, T. Ansari
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引用次数: 3
Gas sensing properties of indium–gallium–zinc–oxide gas sensors in different light intensity 不同光强下铟镓锌氧化物气体传感器的气敏性能
Pub Date : 2015-06-01 DOI: 10.1016/J.ANCR.2015.03.001
Kuen-Lin Chen, Guo-Jhen Jiang, Kai‐Wei Chang, Jan-Han Chen, Chiu-Hsien Wu
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引用次数: 27
Development and applications of spectrophotometric methods for quantitative determination of caroverine in pharmaceutical pure and tablet formulations 分光光度法定量测定药物纯制剂和片剂中胡萝卜碱的研究与应用
Pub Date : 2015-06-01 DOI: 10.1016/j.ancr.2015.03.004
Asad Raza, Tariq Mahmood Ansari

This paper describes two simple and novel analytical methods by using spectrophotometric technique for the determination of caroverine a spasmolytic drug in pharmaceutical formulations. The first (A) is a direct method in which analysis of the pure drug was carried out at its λmax 304 nm in ethanol solvent. The method was linear from 0.5 to 18 μg/ml with correlation coefficient of 0.999 and molar absorptivity of 5.55 × 104 L mole−1 cm−1. Limit of detection and limit of quantification were 0.44 and 1.47 μg/ml. While the second method (B) is based on the charge transfer reaction between caroverine as n-electron donor and 7,7,8,8-tetracyanoquinodimethane (TCNQ) as pi-acceptor resulting in highly colored stable complex, which showed maximum absorption band at wavelength of 525 nm. The thermodynamic parameters were calculated as association constant KCT of 7.53 × 104 mol−1 and Gibbs free energy ΔG° of −6.72 kJ mol−1. Different variables affecting the charge transfer reaction were carefully studied and optimized. At the optimum reaction conditions, Beer’s law was obeyed in a concentration range of 1–35 μg ml−1 with molar absorptivity of 1.17 × 104 L mole−1 cm−1 and correlation coefficient of 0.9999. The proposed methods were validated according to ICH guidelines.

本文介绍了两种简便、新颖的分光光度法测定制剂中解痉药卡罗弗碱的方法。第一种(A)是直接法,纯药物在乙醇溶剂中在λmax 304 nm处进行分析。该方法在0.5 ~ 18 μg/ml范围内呈线性关系,相关系数为0.999,摩尔吸光度为5.55 × 104 L mol−1 cm−1。检测限和定量限分别为0.44和1.47 μg/ml。而第二种方法(B)是基于胡萝卜碱作为n电子供体与7,7,8,8-四氰喹诺二甲烷(TCNQ)作为pi受体之间的电荷转移反应,得到高度着色的稳定配合物,该配合物在波长525 nm处显示出最大吸收带。热力学参数计算为缔合常数KCT为7.53 × 104 mol−1,吉布斯自由能ΔG°为- 6.72 kJ mol−1。对影响电荷转移反应的各种因素进行了仔细的研究和优化。在最佳反应条件下,溶液浓度在1 ~ 35 μ ml−1范围内符合比尔定律,摩尔吸光度为1.17 × 104 L mol−1 cm−1,相关系数为0.9999。根据ICH指南对建议的方法进行了验证。
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引用次数: 3
Development and validation of a high performance liquid chromatography method for oligodeoxynucleotides determination in a novel coagel-based formulation 高效液相色谱法在新型混凝制剂中测定寡脱氧核苷酸的建立与验证
Pub Date : 2015-06-01 DOI: 10.1016/j.ancr.2015.03.003
Gabriela V. Ullio-Gamboa , Juan M. Llabot , María F. Sanchez-Vallecillo , Belkys A. Maletto , Santiago D. Palma , Daniel A. Allemandi

The therapeutic benefit of phosphorothioate oligodeoxynucleotides (PS-ODN) containing immune stimulatory sequences has been demonstrated in animal models of cancer and infection. Several tools are available for the determination of these oligonucleotides in biological samples and pharmaceutical preparations, including UV spectroscopy, dye binding, isotopic tracing, capillary gel electrophoresis (CGE), hybridization-based enzyme-linked immunosorbent assay (ELISA), and chromatography techniques.

However, due to inter-assay variability and accuracy problems associated with the afore mentioned methods, we have developed and validated an isocratic high performance liquid chromatographic (HPLC) for analytical determination of PS-ODN containing unmethylated CpG motifs (CpG-ODN). Validation under Food and Drug Administration (FDA) guidelines of the analytical parameters include: linearity (r2 0.9996), LOD (0.86 μg/ml) and LOQ (6.25 μg/ml), intra (0.19–3.37%) and inter-day precision (0.63–3.75%) expressed as relative standard deviation (RSD), and robustness parameters (less than 2.80%). Using this method, recoveries ranging from 89.9% to 99.9% were obtained. Thus, this method provides a simple, sensitive, precise and reproducible examination which can be readily adapted for the assessment of CpG-ODN in different pharmaceutical preparations.

含有免疫刺激序列的硫代寡脱氧核苷酸(PS-ODN)的治疗效益已在癌症和感染的动物模型中得到证实。有几种工具可用于测定生物样品和药物制剂中的这些寡核苷酸,包括紫外光谱、染料结合、同位素示踪、毛细管凝胶电泳(CGE)、基于杂交的酶联免疫吸附测定(ELISA)和色谱技术。然而,由于与上述方法相关的分析间变异性和准确性问题,我们开发并验证了一种等密度高效液相色谱(HPLC)用于分析测定含有未甲基化CpG基序的PS-ODN (CpG- odn)。在美国食品药品监督管理局(FDA)的指导下,分析参数的验证包括:线性度(r2 0.9996), LOD (0.86 μg/ml)和LOQ (6.25 μg/ml),内(0.19-3.37%)和日间精密度(0.63-3.75%),以相对标准偏差(RSD)表示,稳健性参数(小于2.80%)。加样回收率为89.9% ~ 99.9%。该方法简便、灵敏、准确、重复性好,可用于不同药物制剂中CpG-ODN的检测。
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引用次数: 0
Towards broadening thermospray flame furnace atomic absorption spectrometry: Influence of organic solvents on the analytical signal of magnesium 扩宽热喷涂火焰炉原子吸收光谱法:有机溶剂对镁分析信号的影响
Pub Date : 2015-06-01 DOI: 10.1016/j.ancr.2015.02.002
Ezequiel Morzan , Jorge Stripeikis , Mabel Tudino

This study demonstrates the influence of the solvent when thermospray flame furnace atomic absorption spectrometry (TS-FF-AAS) is employed for the determination of elements of low volatility, taking magnesium (Mg) as leading case. Several organic solvents/water solutions of different characteristics (density, surface tension, viscosity, etc.) and proportions were employed for the TS-FF-AAS analytical determination. To this end, solutions containing methanol, ethanol and isopropanol in water were assayed. Measurements were performed at different acetylene/air ratios of the combustion flame and then, the corresponding response surfaces were obtained. Methanol/water 75% v/v as carrier and a fuel rich flame were found as the most sensitive alternative.

In the light of these findings and in order to explain the changes on the analytical signal, the influence of the solvent characteristics, the sample droplet size and the redox environment was studied. An estimation of the temperature of different zones of the heated flame furnace based on a modified signal ratio pyrometry method was analyzed for comparative purposes. A full discussion is provided throughout the paper.

Once obtained the best conditions for analysis, Mg was determined in samples of effervescent vitamin tablets comparing two different solvents. The tablets were dissolved in methanol/water 75% v/v and ethanol/water 75% v/v and then, directly introduced in the TS device. The methanol/water 75% v/v dissolution yielded a slightly higher sensitivity when compared to ethanol/water and thus, the latter was selected due to its lower toxicity. The obtained figures of merit are: LOD (3σb): 0.021 mg L−1; LOQ (10σb): 0.068 mg L−1, sensitivity: 0.086 L mg−1; RSD%: 3.55, dynamic linear range 0.068–5 mg L−1. Comparison of the results was performed by flame atomic absorption spectrometry (FAAS), showing a good agreement (95% confidence level, n = 5). Whilst the FAAS approach needed sample mineralization as no complete solubility was attained with both alcohol/water solvents, TS allowed direct introduction of the sample with an excellent recovery of the analyte after spiking. The whole TS procedure was more economic (lower amount of reagents and wastings, lower time of operation) and faster (60 h−1 sampling throughput) than FAAS.

Nonetheless, the main objective of this work is to show that an analytical signal different from zero can be obtained for Mg via TS by simply choosing the adequate operational variables that allow an optimization of the mass transfer of the analyte into the atomizer and a favorable dynamics of desolvation/atomization.

This approach could broad TS analytical capabilities to other elements of lower volatility as it is shown here for the case of Mg.

以镁(Mg)为例,研究了热喷涂火焰炉原子吸收光谱法(TS-FF-AAS)测定低挥发性元素时溶剂的影响。采用几种不同特性(密度、表面张力、粘度等)和比例的有机溶剂/水溶液进行TS-FF-AAS分析测定。为此,对水中含有甲醇、乙醇和异丙醇的溶液进行了测定。在不同的乙炔/空气燃烧火焰比下进行了测量,得到了相应的响应面。以75% v/v的甲醇/水为载体和富燃料火焰为最敏感的替代品。根据这些发现,为了解释分析信号的变化,研究了溶剂特性、样品液滴大小和氧化还原环境对分析信号的影响。分析了一种基于改进信号比热法的火焰炉不同区域温度估计方法,并进行了比较。全文进行了全面的讨论。在获得最佳分析条件后,比较两种不同的溶剂,测定了泡腾式维生素片样品中的Mg。将片剂分别溶于75% v/v的甲醇/水和75% v/v的乙醇/水中,直接导入TS装置。与乙醇/水相比,75% v/v的甲醇/水溶解产生的灵敏度略高,因此,选择后者是因为其毒性较低。所得的优值为:LOD (3σb): 0.021 mg L−1;LOQ (10σb): 0.068 mg L−1,灵敏度:0.086 L mg−1;RSD%: 3.55,动态线性范围0.068 ~ 5mg L−1。火焰原子吸收光谱法(FAAS)对结果进行了比较,显示出良好的一致性(95%置信水平,n = 5)。虽然FAAS方法需要矿化样品,因为酒精/水溶剂都不能完全溶解,但TS允许直接引入样品,并在峰化后获得极好的分析物回收率。整个TS过程比原子吸收法更经济(试剂用量和浪费更少,操作时间更短),速度更快(60 h−1采样吞吐量)。尽管如此,这项工作的主要目标是表明,通过简单地选择适当的操作变量,可以优化分析物进入雾化器的传质和有利的脱溶/雾化动力学,可以通过TS获得不同于零的分析信号。这种方法可以将TS分析能力扩展到其他波动性较低的元素,如图所示为Mg的情况。
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引用次数: 2
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Analytical Chemistry Research
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