Pub Date : 2024-08-29DOI: 10.1080/10495398.2024.2396414
Xueying Wang, Cai Zhang, Rishun Li, Yan Qiu, Yanbo Ma, Shuai Wang, Yuanxiao Li, Shuai Guo, Chenxu Li
In this study, we conducted a thorough investigation into the mechanisms by which miR-29 influences lipid metabolism. Thirty-two cows were selected and categorized into distinct groups based on their liver triglyceride (TG) content: healthy, mild fatty liver, and moderate fatty liver groups. Dairy cows with moderate fatty liver showed higher levels of hepatic lipid accumulation, MDA content and serum AST, ALT and ALP contents and lower hepatic catalase CAT and SOD activities. Subsequently, hepatocytes isolated from healthy calves were exposed to sodium oleate (SO) in the presence or absence of pre-incubation with miR-29 inhibitor or inhibitor NC. Pre-transfection with miR-29 inhibitor resulted in reduced hepatocyte lipid accumulation and MDA levels, as well as decreased levels of AST, ALT, and ALP in the supernatant. In the miR-29 inhibitor + SO group, there was an increase in the expression of SREBP-1, FAS, SCD1, and Sirt1. Meanwhile, the expression of PPARα, CPT1, CPT2, PGC-1α, NRF-1, UCP2, and miR-29 were observed to be decreased. In comparison to the miR-29 inhibitor + SO group, some of the measured indicators showed partial reversal in the miR-29 inhibitor + siSirt1 + SO group. Collectively, these findings provide evidence that miR-29 may play a crucial role in the pathogenesis of fatty liver in dairy cows.
在这项研究中,我们对 miR-29 影响脂质代谢的机制进行了深入研究。我们选择了 32 头奶牛,并根据其肝脏甘油三酯(TG)含量将其分为不同的组别:健康组、轻度脂肪肝组和中度脂肪肝组。中度脂肪肝奶牛的肝脏脂质积累、MDA 含量、血清 AST、ALT 和 ALP 含量较高,肝脏过氧化氢酶 CAT 和 SOD 活性较低。随后,在有或没有预先孵育 miR-29 抑制剂或抑制剂 NC 的情况下,将从健康小牛分离的肝细胞暴露于油酸钠(SO)。预先转染 miR-29 抑制剂可减少肝细胞脂质积累和 MDA 水平,并降低上清液中的 AST、ALT 和 ALP 水平。在 miR-29 抑制剂 + SO 组,SREBP-1、FAS、SCD1 和 Sirt1 的表达增加。同时,观察到 PPARα、CPT1、CPT2、PGC-1α、NRF-1、UCP2 和 miR-29 的表达下降。与 miR-29 抑制剂 + SO 组相比,miR-29 抑制剂 + siSirt1 + SO 组的部分测量指标出现了部分逆转。总之,这些研究结果证明,miR-29 在奶牛脂肪肝的发病机制中可能起着至关重要的作用。
{"title":"Down-regulation of miR-29 improves lipid metabolism in fatty liver of dairy cows.","authors":"Xueying Wang, Cai Zhang, Rishun Li, Yan Qiu, Yanbo Ma, Shuai Wang, Yuanxiao Li, Shuai Guo, Chenxu Li","doi":"10.1080/10495398.2024.2396414","DOIUrl":"https://doi.org/10.1080/10495398.2024.2396414","url":null,"abstract":"<p><p>In this study, we conducted a thorough investigation into the mechanisms by which miR-29 influences lipid metabolism. Thirty-two cows were selected and categorized into distinct groups based on their liver triglyceride (TG) content: healthy, mild fatty liver, and moderate fatty liver groups. Dairy cows with moderate fatty liver showed higher levels of hepatic lipid accumulation, MDA content and serum AST, ALT and ALP contents and lower hepatic catalase CAT and SOD activities. Subsequently, hepatocytes isolated from healthy calves were exposed to sodium oleate (SO) in the presence or absence of pre-incubation with miR-29 inhibitor or inhibitor NC. Pre-transfection with miR-29 inhibitor resulted in reduced hepatocyte lipid accumulation and MDA levels, as well as decreased levels of AST, ALT, and ALP in the supernatant. In the miR-29 inhibitor + SO group, there was an increase in the expression of <i>SREBP-1</i>, <i>FAS</i>, <i>SCD1</i>, and <i>Sirt1</i>. Meanwhile, the expression of <i>PPARα</i>, <i>CPT1</i>, <i>CPT2</i>, <i>PGC-1α</i>, <i>NRF-1</i>, <i>UCP2</i>, and miR-29 were observed to be decreased. In comparison to the miR-29 inhibitor + SO group, some of the measured indicators showed partial reversal in the miR-29 inhibitor + siSirt1 + SO group. Collectively, these findings provide evidence that miR-29 may play a crucial role in the pathogenesis of fatty liver in dairy cows.</p>","PeriodicalId":7836,"journal":{"name":"Animal Biotechnology","volume":" ","pages":"2396414"},"PeriodicalIF":1.7,"publicationDate":"2024-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142103685","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-15DOI: 10.1080/10495398.2024.2387015
Shengbo Meng, Shanshan Xing, Huifen Xu, Jing Li, Yixuan Jiang, Hui He, Hanfang Cai, Ming Li
Intestinal microbial community plays an important part in maintaining health and skeletal muscle development in livestock. This study is the first of its kind in the world. In order to better understand the relationship between gut microbiota and gene expression in skeletal muscle of rabbits, caecum contents and longissimus dorsi tissues of rabbits at 0 d (S1), 35 d (S2) and 70d (S3) were collected and subjected for 16S rRNA sequencing and transcriptome sequencing. Our results showed that, among three groups of rabbits, Firmicutes and Bacteroidetes were the dominant phyla at the phylum level, while Akmansia, Bacteroides and Ruminobacter were the dominant genera at the genus level, and the relative abundance of Akmansia and Bacteroides increased firstly and then decreased from 0 d to 70 d. By analyzing the transcriptome sequencing data, we identified 2866, 2446 and 4541 differentially expressed genes (DEGs) in S1 vs S2, S2 vs S3 and S1 vs S3 groups, respectively. Finally, we performed correlation analysis between gut microbiota and the expression levels of muscle development-related genes of rabbits at 0 d and 70 d. Compared with 0 day old rabbits, in 70 day old rabbits Acinetobacter and Cronbacter with decreased abundance, and Ruminococcaceae_UCG-014 and Ruminococcus_1 with increase abundance is beneficial to caecum health in rabbits. These results will lay a foundation for further re-searches about the relationship between caecum microflora and muscle development in rabbits.
{"title":"Integrated analysis of intestinal microbial community and muscle transcriptome profile in rabbits.","authors":"Shengbo Meng, Shanshan Xing, Huifen Xu, Jing Li, Yixuan Jiang, Hui He, Hanfang Cai, Ming Li","doi":"10.1080/10495398.2024.2387015","DOIUrl":"https://doi.org/10.1080/10495398.2024.2387015","url":null,"abstract":"<p><p>Intestinal microbial community plays an important part in maintaining health and skeletal muscle development in livestock. This study is the first of its kind in the world. In order to better understand the relationship between gut microbiota and gene expression in skeletal muscle of rabbits, caecum contents and longissimus dorsi tissues of rabbits at 0 d (S1), 35 d (S2) and 70d (S3) were collected and subjected for 16S rRNA sequencing and transcriptome sequencing. Our results showed that, among three groups of rabbits, Firmicutes and Bacteroidetes were the dominant phyla at the phylum level, while Akmansia, Bacteroides and Ruminobacter were the dominant genera at the genus level, and the relative abundance of Akmansia and Bacteroides increased firstly and then decreased from 0 d to 70 d. By analyzing the transcriptome sequencing data, we identified 2866, 2446 and 4541 differentially expressed genes (DEGs) in S1 vs S2, S2 vs S3 and S1 vs S3 groups, respectively. Finally, we performed correlation analysis between gut microbiota and the expression levels of muscle development-related genes of rabbits at 0 d and 70 d. Compared with 0 day old rabbits, in 70 day old rabbits Acinetobacter and Cronbacter with decreased abundance, and <i>Ruminococcaceae_UCG-014</i> and <i>Ruminococcus_1</i> with increase abundance is beneficial to caecum health in rabbits. These results will lay a foundation for further re-searches about the relationship between caecum microflora and muscle development in rabbits.</p>","PeriodicalId":7836,"journal":{"name":"Animal Biotechnology","volume":" ","pages":"2387015"},"PeriodicalIF":1.7,"publicationDate":"2024-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141981535","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-09Epub Date: 2024-08-13DOI: 10.1080/10495398.2024.2390935
Binod Kumar, Nilima N Brahmbhatt, Bhupendrakumar Thakre, Biswa Ranjan Maharana, Vijay L Parmar, Manoj Kumar
Haemoparasitic diseases constitute a significant constraint to economic livestock farming. Diagnostic techniques that are inexpensive, rapid, reliable, and precise are crucial for the management of diseases. In this context, PCR assays are very valuable yet expensive since the samples must be processed before being included in the PCR reaction. Accordingly, the goal of the current study was to lower the PCR costs without jeopardizing the assay's sensitivity and specificity. For that purpose, the alkaline solution was optimized for low cost and quick DNA extraction (blood lysate), and PCR reagents were modified for optimum reaction. In comparison to purified whole blood genomic DNA, the currently developed and optimized blood lysate method was found to be 95.5% less expensive, as well as being equally sensitive and specific for the molecular detection (PCR) of haemoparasites like Babesia, Theileria, Trypanosoma and rickettsiales in cattle, buffaloes, horses, and dogs. The assay was also demonstrated to be quick, less likely to cross-contaminate, and appropriate for use in laboratories with limited resources. Therefore, the currently developed and optimized blood lysate method could serve as a viable alternative to purified whole blood genomic DNA for molecular detection (PCR) of haemoparasites in animals particularly in resource-limited settings.
血寄生虫病是制约经济畜牧业发展的一个重要因素。廉价、快速、可靠和精确的诊断技术对疾病管理至关重要。在这种情况下,PCR 检测非常有价值,但也非常昂贵,因为在将样本纳入 PCR 反应之前必须对其进行处理。因此,本研究的目标是在不影响检测灵敏度和特异性的前提下降低 PCR 成本。为此,对碱性溶液进行了优化,以实现低成本、快速的 DNA 提取(血液裂解液),并对 PCR 试剂进行了改良,以实现最佳反应。与纯化的全血基因组 DNA 相比,目前开发和优化的血液裂解液方法成本降低了 95.5%,而且在对牛、水牛、马和狗中的巴贝斯虫、丝虫、锥虫和立克次体等血液寄生虫进行分子检测(PCR)时具有同样的灵敏度和特异性。该检测方法还被证明快速、不易交叉感染,适合资源有限的实验室使用。因此,目前开发和优化的血液裂解液方法可作为纯化全血基因组 DNA 的可行替代方法,用于动物血液寄生虫的分子检测(PCR),尤其是在资源有限的环境中。
{"title":"Molecular identification of haemoparasites in animals using blood lysate PCR: a quick and inexpensive alternative to purified whole genomic DNA.","authors":"Binod Kumar, Nilima N Brahmbhatt, Bhupendrakumar Thakre, Biswa Ranjan Maharana, Vijay L Parmar, Manoj Kumar","doi":"10.1080/10495398.2024.2390935","DOIUrl":"https://doi.org/10.1080/10495398.2024.2390935","url":null,"abstract":"<p><p>Haemoparasitic diseases constitute a significant constraint to economic livestock farming. Diagnostic techniques that are inexpensive, rapid, reliable, and precise are crucial for the management of diseases. In this context, PCR assays are very valuable yet expensive since the samples must be processed before being included in the PCR reaction. Accordingly, the goal of the current study was to lower the PCR costs without jeopardizing the assay's sensitivity and specificity. For that purpose, the alkaline solution was optimized for low cost and quick DNA extraction (blood lysate), and PCR reagents were modified for optimum reaction. In comparison to purified whole blood genomic DNA, the currently developed and optimized blood lysate method was found to be 95.5% less expensive, as well as being equally sensitive and specific for the molecular detection (PCR) of haemoparasites like <i>Babesia, Theileria</i>, <i>Trypanosoma</i> and rickettsiales in cattle, buffaloes, horses, and dogs. The assay was also demonstrated to be quick, less likely to cross-contaminate, and appropriate for use in laboratories with limited resources. Therefore, the currently developed and optimized blood lysate method could serve as a viable alternative to purified whole blood genomic DNA for molecular detection (PCR) of haemoparasites in animals particularly in resource-limited settings.</p>","PeriodicalId":7836,"journal":{"name":"Animal Biotechnology","volume":"35 1","pages":"2390935"},"PeriodicalIF":1.7,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141970492","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-25DOI: 10.1080/10495398.2024.2379883
Sunirmal Sheet, Sun Sik Jang, Jin-A Lim, Woncheoul Park, Dahye Kim
This study investigates the transcriptome-level alterations that influence production traits and early fattening stage myogenesis in Hanwoo cattle, specifically focusing on the highly prized Longissimus dorsi (LD) and Psoas major (PM) skeletal muscles, which hold significant commercial value. We conducted RNA sequencing analysis on LD and PM muscles from 14 Hanwoo steers (n = 7, each group) at the age of 10 months, all fed the same diet. Our results unveiled a total of 374 and 206 up-regulated differentially expressed genes (DEGs) in LD and PM muscles, respectively, with statistical significance (p < 0.05) and a log2fold change ≥ 1. Genes governing muscle development processes, such as PAX3, MYL3, COL11A1, and MYL6B, were found to be expressed at higher levels in both tissues. Conversely, genes regulating lipid metabolism, including FABP3, FABP4, LEP, ADIPOQ, and PLIN1, exhibited higher expression in the PM muscle. Functional enrichment analysis revealed a tissue-specific response, as PM muscle showed increased lipid metabolism allied pathways, including the PPAR signaling pathway and regulation of lipolysis in adipocytes, while LD was characterized by growth and proliferative processes. Our findings validate the presence of a muscle-dependent transcription and co-expression pattern that elucidates the transcriptional landscape of bovine skeletal muscle.
{"title":"Molecular signatures diversity unveiled through a comparative transcriptome analysis of longissimus dorsi and psoas major muscles in Hanwoo cattle.","authors":"Sunirmal Sheet, Sun Sik Jang, Jin-A Lim, Woncheoul Park, Dahye Kim","doi":"10.1080/10495398.2024.2379883","DOIUrl":"https://doi.org/10.1080/10495398.2024.2379883","url":null,"abstract":"<p><p>This study investigates the transcriptome-level alterations that influence production traits and early fattening stage myogenesis in Hanwoo cattle, specifically focusing on the highly prized Longissimus dorsi (LD) and Psoas major (PM) skeletal muscles, which hold significant commercial value. We conducted RNA sequencing analysis on LD and PM muscles from 14 Hanwoo steers (<i>n</i> = 7, each group) at the age of 10 months, all fed the same diet. Our results unveiled a total of 374 and 206 up-regulated differentially expressed genes (DEGs) in LD and PM muscles, respectively, with statistical significance (<i>p</i> < 0.05) and a log<sub>2</sub>fold change ≥ 1. Genes governing muscle development processes, such as <i>PAX3</i>, <i>MYL3</i>, <i>COL11A1</i>, and <i>MYL6B</i>, were found to be expressed at higher levels in both tissues. Conversely, genes regulating lipid metabolism, including <i>FABP3</i>, <i>FABP4</i>, <i>LEP</i>, <i>ADIPOQ</i>, and <i>PLIN1</i>, exhibited higher expression in the PM muscle. Functional enrichment analysis revealed a tissue-specific response, as PM muscle showed increased lipid metabolism allied pathways, including the PPAR signaling pathway and regulation of lipolysis in adipocytes, while LD was characterized by growth and proliferative processes. Our findings validate the presence of a muscle-dependent transcription and co-expression pattern that elucidates the transcriptional landscape of bovine skeletal muscle.</p>","PeriodicalId":7836,"journal":{"name":"Animal Biotechnology","volume":" ","pages":"2379883"},"PeriodicalIF":1.7,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141756686","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The aim of this study was to analyze the effects of non-genetic factors on the estimation of genetic parameters of early growth traits in hybrid mutton sheep using ASReml software, in order to provide theoretical basis for screening the optimal hybriding combinations and accelerating the breeding process of new breeds of specialized housed-feeding mutton sheep. We selected the wellgrown hybrid Southhu (Southdown × Hu sheep) and Dorhu (Dorset × Hu sheep) sheep as the research objects, constructed weight correction formulae for SH and DH sheep at 60 and 180 days; and used ASReml software to investigate the effects of non-genetic factors on the estimation of genetic parameters of early growth traits in hybrid sheep. The results showed that the birth month and birth type were found significant for all traits (p < 0.001); the heritability of maternal effects ranged from 0.0709 to 0.1859. It was found that both SH and DH sheep emerged the potential for rapid early growth and development, early growth traits are significantly affected by maternal genetic effects, thereby the maternal effect should be taken into consideration for the purpose of improving accuracy in parameter estimations and therefore increasing the success of breeding programs.
本研究旨在利用ASReml软件分析非遗传因素对杂交羊早期生长性状遗传参数估计的影响,为筛选最佳杂交组合、加快舍饲专用羊新品种选育进程提供理论依据。我们选取生长良好的杂交种南湖羊(Southdown × Hu sheep)和多尔湖羊(Dorset × Hu sheep)作为研究对象,构建了SH和DH羊60日龄和180日龄体重校正公式,并利用ASReml软件研究了非遗传因素对杂交羊早期生长性状遗传参数估计的影响。结果表明,出生月份和出生类型对所有性状均有显著影响(p
{"title":"ASReml-based estimation of early genetic parameters in hybrid mutton sheep populations.","authors":"Haifeng Wang, Shanning Jin, Zhenfei Xu, Jinxia Zhang, Xuejiao An, Rui Zhang, Yanyan Hao, Lina Zhu, Yinchun Wang, Junni Jin, Zhiguang Geng, Chenglan Li, Jianye Li, Yaojing Yue","doi":"10.1080/10495398.2024.2383261","DOIUrl":"https://doi.org/10.1080/10495398.2024.2383261","url":null,"abstract":"<p><p>The aim of this study was to analyze the effects of non-genetic factors on the estimation of genetic parameters of early growth traits in hybrid mutton sheep using ASReml software, in order to provide theoretical basis for screening the optimal hybriding combinations and accelerating the breeding process of new breeds of specialized housed-feeding mutton sheep. We selected the wellgrown hybrid Southhu (Southdown × Hu sheep) and Dorhu (Dorset × Hu sheep) sheep as the research objects, constructed weight correction formulae for SH and DH sheep at 60 and 180 days; and used ASReml software to investigate the effects of non-genetic factors on the estimation of genetic parameters of early growth traits in hybrid sheep. The results showed that the birth month and birth type were found significant for all traits (<i>p</i> < 0.001); the heritability of maternal effects ranged from 0.0709 to 0.1859. It was found that both SH and DH sheep emerged the potential for rapid early growth and development, early growth traits are significantly affected by maternal genetic effects, thereby the maternal effect should be taken into consideration for the purpose of improving accuracy in parameter estimations and therefore increasing the success of breeding programs.</p>","PeriodicalId":7836,"journal":{"name":"Animal Biotechnology","volume":"35 1","pages":"2383261"},"PeriodicalIF":1.7,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141874007","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-28DOI: 10.1080/10495398.2024.2370810
Chunfeng Zhang, Yi Sun, Li Kang, Yunliang Jiang
As a protein structurally similar to insulin, relaxin3 (RLN3) plays a role in promoting arousal, suppressing depressive or anxious behaviors. Two studies revealed the increase of RLN3 expression during chicken follicle selection. In this study, by real-time quantitative PCR and luciferase assay, mRNA expression and single nucleotide polymorphisms (SNPs) of chicken RLN3 were investigated. The mRNA expression of chicken RLN3 was higher in the granulosa cell of hierarchal follicles (Post-GCs) than that of pre-hierarchal follicles (Pre-GCs). In Pre-GCs, the mRNA expression of chicken RLN3 was stimulated by FSH and progesterone; in Post-GCs, it was stimulated by higher concentration of estrogen and FSH, however, was inhibited by progesterone. Four SNPs including g.-655G > C, g-592G > A, g.-372T > A and g.-282G > C were identified in the critical promoter region from -1291 bp to -207 bp of chicken RLN3, among which g.-655G > C, and g-592G > A were associated with age at first laying and clutch size, respectively, in Zaozhuang Sunzhi chickens. At g.-655G > C and g-592G > A, allele C and allele A had higher transcriptional activity, respectively. These data suggest that RLN3 plays an important role in chicken follicle development and SNPs in its promoter region are potential DNA markers for improving egg production traits.
弛缓素3(RLN3)是一种结构类似于胰岛素的蛋白质,在促进唤醒、抑制抑郁或焦虑行为方面发挥作用。两项研究发现,在鸡卵泡选择过程中,RLN3的表达量有所增加。本研究通过实时定量PCR和荧光素酶检测,研究了鸡RLN3的mRNA表达和单核苷酸多态性(SNPs)。在分层卵泡(Post-GCs)的颗粒细胞中,鸡RLN3的mRNA表达量高于分层前卵泡(Pre-GCs)。在Pre-GCs中,鸡RLN3的mRNA表达受到FSH和孕酮的刺激;在Post-GCs中,鸡RLN3的mRNA表达受到较高浓度雌激素和FSH的刺激,但受到孕酮的抑制。在RLN3-1291 bp至-207 bp的关键启动子区域发现了4个SNPs,包括g.-655G > C、g-592G > A、g.-372T > A和g.-282G > C,其中g.-655G > C和g-592G > A分别与枣庄孙氏鸡的初产蛋鸡龄和窝产蛋量有关。在 g.-655G > C 和 g-592G > A 时,等位基因 C 和等位基因 A 分别具有更高的转录活性。这些数据表明,RLN3在鸡卵泡发育中起着重要作用,其启动子区的SNPs是改善产蛋性状的潜在DNA标记。
{"title":"Characterization of chicken <i>Relaxin3</i> gene: mRNA expression and response to reproductive hormone treatment in ovarian granulosa cells, and single nucleotide polymorphisms associated with egg laying traits in hens.","authors":"Chunfeng Zhang, Yi Sun, Li Kang, Yunliang Jiang","doi":"10.1080/10495398.2024.2370810","DOIUrl":"https://doi.org/10.1080/10495398.2024.2370810","url":null,"abstract":"<p><p>As a protein structurally similar to insulin, relaxin3 (RLN3) plays a role in promoting arousal, suppressing depressive or anxious behaviors. Two studies revealed the increase of RLN3 expression during chicken follicle selection. In this study, by real-time quantitative PCR and luciferase assay, mRNA expression and single nucleotide polymorphisms (SNPs) of chicken <i>RLN3</i> were investigated. The mRNA expression of chicken <i>RLN3</i> was higher in the granulosa cell of hierarchal follicles (Post-GCs) than that of pre-hierarchal follicles (Pre-GCs). In Pre-GCs, the mRNA expression of chicken <i>RLN3</i> was stimulated by FSH and progesterone; in Post-GCs, it was stimulated by higher concentration of estrogen and FSH, however, was inhibited by progesterone. Four SNPs including g.-655G > C, g-592G > A, g.-372T > A and g.-282G > C were identified in the critical promoter region from -1291 bp to -207 bp of chicken <i>RLN3</i>, among which g.-655G > C, and g-592G > A were associated with age at first laying and clutch size, respectively, in Zaozhuang Sunzhi chickens. At g.-655G > C and g-592G > A, allele <i>C</i> and allele <i>A</i> had higher transcriptional activity, respectively. These data suggest that RLN3 plays an important role in chicken follicle development and SNPs in its promoter region are potential DNA markers for improving egg production traits.</p>","PeriodicalId":7836,"journal":{"name":"Animal Biotechnology","volume":" ","pages":"2370810"},"PeriodicalIF":1.7,"publicationDate":"2024-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141465632","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-28Epub Date: 2024-07-14DOI: 10.1080/10495398.2024.2374328
María Alonso-García, Beatriz Gutiérrez-Gil, Rocío Pelayo, Pablo A S Fonseca, Héctor Marina, Juan José Arranz, Aroa Suárez-Vega
Long non-coding RNAs (lncRNAs) are being studied in farm animals due to their association with traits of economic interest, such as fat deposition. Based on the analysis of perirenal fat transcriptomes, this research explored the relevance of these regulatory elements to fat deposition in suckling lambs. To that end, meta-analysis techniques have been implemented to efficiently characterize and detect differentially expressed transcripts from two different RNA-seq datasets, one including samples of two sheep breeds that differ in fat deposition features, Churra and Assaf (n = 14), and one generated from Assaf suckling lambs with different fat deposition levels (n = 8). The joint analysis of the 22 perirenal fat RNA-seq samples with the FEELnc software allowed the detection of 3953 novel lncRNAs. After the meta-analysis, 251 differentially expressed genes were identified, 21 of which were novel lncRNAs. Additionally, a co-expression analysis revealed that, in suckling lambs, lncRNAs may play a role in controlling angiogenesis and thermogenesis, processes highlighted in relation to high and low fat deposition levels, respectively. Overall, while providing information that could be applied for the improvement of suckling lamb carcass traits, this study offers insights into the biology of perirenal fat deposition regulation in mammals.
{"title":"A meta-analysis approach for annotation and identification of lncRNAs controlling perirenal fat deposition in suckling lambs.","authors":"María Alonso-García, Beatriz Gutiérrez-Gil, Rocío Pelayo, Pablo A S Fonseca, Héctor Marina, Juan José Arranz, Aroa Suárez-Vega","doi":"10.1080/10495398.2024.2374328","DOIUrl":"10.1080/10495398.2024.2374328","url":null,"abstract":"<p><p>Long non-coding RNAs (lncRNAs) are being studied in farm animals due to their association with traits of economic interest, such as fat deposition. Based on the analysis of perirenal fat transcriptomes, this research explored the relevance of these regulatory elements to fat deposition in suckling lambs. To that end, meta-analysis techniques have been implemented to efficiently characterize and detect differentially expressed transcripts from two different RNA-seq datasets, one including samples of two sheep breeds that differ in fat deposition features, Churra and Assaf (<i>n</i> = 14), and one generated from Assaf suckling lambs with different fat deposition levels (<i>n</i> = 8). The joint analysis of the 22 perirenal fat RNA-seq samples with the <i>FEELnc</i> software allowed the detection of 3953 novel lncRNAs. After the meta-analysis, 251 differentially expressed genes were identified, 21 of which were novel lncRNAs. Additionally, a co-expression analysis revealed that, in suckling lambs, lncRNAs may play a role in controlling angiogenesis and thermogenesis, processes highlighted in relation to high and low fat deposition levels, respectively. Overall, while providing information that could be applied for the improvement of suckling lamb carcass traits, this study offers insights into the biology of perirenal fat deposition regulation in mammals.</p>","PeriodicalId":7836,"journal":{"name":"Animal Biotechnology","volume":"35 1","pages":"2374328"},"PeriodicalIF":1.7,"publicationDate":"2024-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141603191","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-08Epub Date: 2024-05-16DOI: 10.1080/10495398.2024.2351973
Changying Wang, Ruige Liu, Wenzhe Luo, Pengxiang Zhao, Heng Wang
Vitamin A is an essential nutrient in animals, playing important roles in animal health. In the pig industry, proper supplementation of vitamin A in the feed can improve pork production performance, while deficiency or excessive intake can lead to growth retardation or disease. However, the specific molecular mechanisms through which vitamin A operates on pig skeletal muscle growth as well as muscle stem cell function remain unexplored. Therefore, in this study, we isolated the pig primary skeletal muscle stem cells (pMuSCs) and treated with retinoic acid (RA), the natural metabolite of vitamin A, and then examined the myogenic capacity of pMuSCs via immunostaining, real-time PCR, CCK8 and western-blot analysis. Unexpectedly, the RA caused a significant decrease in the proliferation and differentiation of pMuSCs. Mechanistically, the RA addition induced the activation of retinoic acid receptor gamma (RARγ), which inhibited the myogenesis through the blockage of protein translation of the master myogenic regulator myogenic differentiation 1 gene (MYOD). Specifically, RARγ inactivate AKT kinase (AKT) signalling and lead to dephosphorylation of eukaryotic translation initiation factor 4E binding protein 1 (eIF4EBP1), which in turn repress the eukaryotic translation initiation factor 4E (eIF4E) complex and block mRNA translation of MYOD. Inhibition of AKT could rescue the myogenic defects of RA-treated pMuSCs. Our findings revealed that retinoid acid signalling inhibits the skeletal muscle stem cell proliferation and differentiation in pigs. Therefore, the vitamin A supplement in the feedstuff should be cautiously optimized to avoid the potential adverse consequences on muscle development associated with the excessive levels of retinoic acid.
维生素 A 是动物必需的营养素,对动物健康起着重要作用。在养猪业中,饲料中适当补充维生素 A 可以提高猪肉的生产性能,而缺乏或摄入过量则会导致生长迟缓或疾病。然而,维生素 A 对猪骨骼肌生长和肌肉干细胞功能的具体分子机制仍有待探索。因此,在本研究中,我们分离了猪原代骨骼肌干细胞(pMuSCs),并用维生素A的天然代谢产物维甲酸(RA)处理,然后通过免疫染色、实时PCR、CCK8和Western-blot分析检测pMuSCs的肌生成能力。出乎意料的是,RA会导致pMuSCs的增殖和分化能力显著下降。从机理上讲,RA的添加诱导了视黄酸受体γ(RARγ)的活化,而视黄酸受体γ通过阻断肌生成调节因子肌生成分化1基因(MYOD)的蛋白翻译抑制了肌生成。具体来说,RARγ使AKT激酶(AKT)信号失活,导致真核翻译起始因子4E结合蛋白1(eIF4EBP1)去磷酸化,进而抑制真核翻译起始因子4E(eIF4E)复合物,阻断MYOD的mRNA翻译。抑制AKT可以挽救经RA处理的pMuSCs的成肌缺陷。我们的研究结果表明,视黄酸信号抑制了猪骨骼肌干细胞的增殖和分化。因此,应谨慎优化饲料中维生素 A 的补充量,以避免过量的视黄酸可能对肌肉发育造成的不良后果。
{"title":"Retinoic acid signalling inhibits myogenesis by blocking MYOD translation in pig skeletal muscle cells.","authors":"Changying Wang, Ruige Liu, Wenzhe Luo, Pengxiang Zhao, Heng Wang","doi":"10.1080/10495398.2024.2351973","DOIUrl":"10.1080/10495398.2024.2351973","url":null,"abstract":"<p><p>Vitamin A is an essential nutrient in animals, playing important roles in animal health. In the pig industry, proper supplementation of vitamin A in the feed can improve pork production performance, while deficiency or excessive intake can lead to growth retardation or disease. However, the specific molecular mechanisms through which vitamin A operates on pig skeletal muscle growth as well as muscle stem cell function remain unexplored. Therefore, in this study, we isolated the pig primary skeletal muscle stem cells (pMuSCs) and treated with retinoic acid (RA), the natural metabolite of vitamin A, and then examined the myogenic capacity of pMuSCs via immunostaining, real-time PCR, CCK8 and western-blot analysis. Unexpectedly, the RA caused a significant decrease in the proliferation and differentiation of pMuSCs. Mechanistically, the RA addition induced the activation of retinoic acid receptor gamma (RARγ), which inhibited the myogenesis through the blockage of protein translation of the master myogenic regulator myogenic differentiation 1 gene (MYOD). Specifically, RARγ inactivate AKT kinase (AKT) signalling and lead to dephosphorylation of eukaryotic translation initiation factor 4E binding protein 1 (eIF4EBP1), which in turn repress the eukaryotic translation initiation factor 4E (eIF4E) complex and block mRNA translation of MYOD. Inhibition of AKT could rescue the myogenic defects of RA-treated pMuSCs. Our findings revealed that retinoid acid signalling inhibits the skeletal muscle stem cell proliferation and differentiation in pigs. Therefore, the vitamin A supplement in the feedstuff should be cautiously optimized to avoid the potential adverse consequences on muscle development associated with the excessive levels of retinoic acid.</p>","PeriodicalId":7836,"journal":{"name":"Animal Biotechnology","volume":"35 1","pages":"2351973"},"PeriodicalIF":3.7,"publicationDate":"2024-05-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140955719","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-06Epub Date: 2024-05-16DOI: 10.1080/10495398.2024.2352771
Waleed A Abd Al-Jabar, Tahreer M Al-Thuwaini
Arylalkylamine-N-acetyl-transferase (AA-NAT) is one of several genes that influence sheep reproduction. Thus, the objective of this study was to investigate whether genetic variability within the AA-NAT gene influenced the reproductive performance of Awassi and Hamdani ewes. A total of 99 twin and 101 single-progeny ewes were analyzed for genomic DNA. Polymerase chain reaction (PCR) was used to produce amplicons of 300, 313, and 287 bp from exons 1, 2, and 3 of the AA-NAT gene. A 300-bp amplicon was genotyped, resulting in two genotypes: GG and GA. Through sequence analysis, a mutation 203 G > A was identified in the GA genotype. The statistical analysis revealed a strong correlation between the single nucleotide polymorphism (SNP) 203 G > A and reproductive performance. Ewes carrying this mutation showed significantly increased litter sizes, twinning rates, lambing rates, and fewer days to lambing compared to those carrying GG. These findings demonstrate that the presence of the 203 G > A SNP variant has a significant positive impact on litter sizes and enhances the fertility of Awassi and Hamdani sheep.
芳基烷基胺-N-乙酰转移酶(AA-NAT)是影响绵羊繁殖的几个基因之一。因此,本研究旨在探讨 AA-NAT 基因的遗传变异是否会影响阿瓦西和哈姆丹尼母羊的繁殖性能。本研究共分析了 99 只双胎母羊和 101 只单胎母羊的基因组 DNA。聚合酶链反应(PCR)产生了来自 AA-NAT 基因 1、2 和 3 外显子的 300、313 和 287 bp 的扩增子。对 300 bp 的扩增子进行基因分型,得出两种基因型:GG 和 GA:GG和GA。通过序列分析,在 GA 基因型中发现了一个 203 G > A 的突变。统计分析显示,单核苷酸多态性(SNP)203 G > A 与繁殖性能有很大的相关性。与携带 GG 基因的母羊相比,携带该突变的母羊在产仔数、孪生率、产羔率和产羔天数上都明显增加。这些研究结果表明,203 G > A SNP 变异对阿瓦西羊和哈姆达尼羊的产仔数和繁殖力有显著的积极影响。
{"title":"Variation in the <i>AA-NAT</i> gene G203A is associated with Awassi and Hamdani sheep fertility.","authors":"Waleed A Abd Al-Jabar, Tahreer M Al-Thuwaini","doi":"10.1080/10495398.2024.2352771","DOIUrl":"10.1080/10495398.2024.2352771","url":null,"abstract":"<p><p>Arylalkylamine-N-acetyl-transferase (<i>AA-NAT</i>) is one of several genes that influence sheep reproduction. Thus, the objective of this study was to investigate whether genetic variability within the <i>AA-NAT</i> gene influenced the reproductive performance of Awassi and Hamdani ewes. A total of 99 twin and 101 single-progeny ewes were analyzed for genomic DNA. Polymerase chain reaction (PCR) was used to produce amplicons of 300, 313, and 287 bp from exons 1, 2, and 3 of the <i>AA-NAT</i> gene. A 300-bp amplicon was genotyped, resulting in two genotypes: GG and GA. Through sequence analysis, a mutation 203 G > A was identified in the GA genotype. The statistical analysis revealed a strong correlation between the single nucleotide polymorphism (SNP) 203 G > A and reproductive performance. Ewes carrying this mutation showed significantly increased litter sizes, twinning rates, lambing rates, and fewer days to lambing compared to those carrying GG. These findings demonstrate that the presence of the 203 G > A SNP variant has a significant positive impact on litter sizes and enhances the fertility of Awassi and Hamdani sheep.</p>","PeriodicalId":7836,"journal":{"name":"Animal Biotechnology","volume":"35 1","pages":"2352771"},"PeriodicalIF":3.7,"publicationDate":"2024-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140955735","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-04-26DOI: 10.1080/10495398.2024.2344213
Yongfu La, Zhongbang Li, Xiaoming Ma, Pengjia Bao, Min Chu, Xian Guo, Chunnian Liang, Ping Yan
Lysozyme like 4 (LYZL4), lysozyme like 6 (LYZL6) and proliferating cell nuclear antigen (PCNA) are implicated in the regulation of testicular function, but there was no research reported available ...
{"title":"Age-dependent changes in the expression and localization of LYZL4, LYZL6 and PCNA during testicular development in the Ashidan yak","authors":"Yongfu La, Zhongbang Li, Xiaoming Ma, Pengjia Bao, Min Chu, Xian Guo, Chunnian Liang, Ping Yan","doi":"10.1080/10495398.2024.2344213","DOIUrl":"https://doi.org/10.1080/10495398.2024.2344213","url":null,"abstract":"Lysozyme like 4 (LYZL4), lysozyme like 6 (LYZL6) and proliferating cell nuclear antigen (PCNA) are implicated in the regulation of testicular function, but there was no research reported available ...","PeriodicalId":7836,"journal":{"name":"Animal Biotechnology","volume":"12 1","pages":""},"PeriodicalIF":3.7,"publicationDate":"2024-04-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140838366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}