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Effects of supplementation with mature coconut water on oxidative stress, semen quality, reproductive hormone levels, and sexual behavior in Boer bucks 补充成熟椰子汁对布尔公鹿氧化应激、精液质量、生殖激素水平和性行为的影响
IF 1.7 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-11-17 DOI: 10.1111/asj.70005
Nur Faizah Nadia Mohd-Zainurian, Haizal Danial Esah, Nuradilla Mohamad-Fauzi, Noor Hashida Hashim, Mohd Shahmi Hakimi Mazlishah, Shamsul Azlin Ahmad Shamsuddin, Yusmin Mohd-Yusuf, Nor Azlina Abd Aziz

Mature coconut water (MCW) has been demonstrated to contain bioactive compounds with antioxidant properties. In vivo research showed that MCW supplementation increased semen quality in rats, suggesting that it may boost reproductive performance. This study investigated the impact of MCW on the reproduction of Boer bucks. Two groups of 12 sexually mature bucks were given either plain water (control) or MCW at 5 mL/kg of body weight daily for 60 days. Sexual behaviors were studied using the focal observation technique, whereas semen was collected for quality assessment. Oxidative stress markers, namely, malondialdehyde (MDA) and glutathione (GSH), along with reproductive hormones, specifically luteinizing hormone (LH), follicle-stimulating hormone (FSH), and testosterone, were quantified in blood serum samples via enzyme-linked immunosorbent assay (ELISA). The oxidative stress analysis showed elevated GSH and reduced MDA levels, accompanied by enhanced sperm quality, including superior motility, concentration, viability, and fewer morphological abnormalities (p < 0.05), in the group receiving MCW. Moreover, there was a rise in LH, FSH, and testosterone levels with improved sexual behaviors (p < 0.05), including a reduced latency to the first mount, increased mount attempts, higher libido, and prolonged kicking and sniffing durations. In conclusion, MCW may improve reproductive health and fertility in Boer bucks.

成熟椰子汁(MCW)已被证明含有具有抗氧化特性的生物活性化合物。体内研究表明,补充 MCW 可提高大鼠的精液质量,这表明 MCW 可提高繁殖性能。本研究调查了 MCW 对布尔公鹿繁殖的影响。研究人员给两组共 12 头性成熟的公鹿喂食白水(对照组)或 MCW(每天每公斤体重 5 毫升),连续喂食 60 天。采用焦点观察法研究雄鹿的性行为,并收集精液进行质量评估。通过酶联免疫吸附试验(ELISA)对血清样本中的氧化应激标记物(即丙二醛(MDA)和谷胱甘肽(GSH))以及生殖激素(特别是黄体生成素(LH)、卵泡刺激素(FSH)和睾酮)进行了定量分析。氧化应激分析表明,GSH 水平升高,MDA 水平降低,同时精子质量提高,包括活力、浓度和存活率提高,形态异常减少(P<0.05)。
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引用次数: 0
An estimation of lysine requirements of fattening pigs maintained and raised in Japan 对日本饲养的育肥猪赖氨酸需求量的估算。
IF 1.7 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-11-17 DOI: 10.1111/asj.70011
Naoya Tsuchino, Katsuaki Takahashi, Takashi Ueno, Teruo Ozeki, Masaya Katsumata

This study aimed to update the first-liming amino acid (lysine) requirements of fattening pigs maintained and raised in Japan using 146 fattening pigs with an average weight of 62 kg. Five diets were prepared with total lysine concentrations of 0.45%, 0.65%, 0.85%, 0.95%, and 1.05%. Six replicates were used for each lysine concentration. The feeding trial lasted for 4 weeks until the average weight of the pigs reached 92 kg. The total lysine concentration of the diets affected feed efficiency throughout the 4 weeks and was lowest in pigs fed diets with a total lysine concentration of 0.45% and highest in pigs fed 0.85%. The total lysine requirement was estimated using feed efficiency as the response index. The linear and quadratic models estimated 0.68% and 0.75% of the requirement for the first 2 weeks and 0.66% and 0.72% for the 4-week period, respectively. These estimates were equivalent to the total lysine requirement of 0.72% for the 50–70 kg body weight (expected gain of 850 g/d) in the Japanese Feeding Standard for Swine 2013 and higher than the 0.59% for the 70–115 kg body weight (expected gain of 1000 g/d).

这项研究旨在更新在日本饲养的育肥猪对初生氨基酸(赖氨酸)的需求量,研究对象是 146 头平均体重为 62 千克的育肥猪。研究人员配制了总赖氨酸浓度分别为 0.45%、0.65%、0.85%、0.95% 和 1.05% 的五种日粮。每种赖氨酸浓度使用六个重复。饲喂试验持续了 4 周,直到猪的平均体重达到 92 千克。日粮的总赖氨酸浓度在整个 4 周内都会影响饲料效率,饲喂总赖氨酸浓度为 0.45% 的日粮的猪的饲料效率最低,饲喂总赖氨酸浓度为 0.85% 的日粮的猪的饲料效率最高。以饲料效率作为反应指数,估算了赖氨酸的总需要量。线性模型和二次模型分别估算出前 2 周的需要量为 0.68% 和 0.75%,4 周的需要量为 0.66% 和 0.72%。这些估计值相当于《2013 年日本猪饲养标准》中 50-70 千克体重(预期增重 850 克/天)赖氨酸总需要量的 0.72%,高于 70-115 千克体重(预期增重 1000 克/天)赖氨酸总需要量的 0.59%。
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引用次数: 0
Dietary water fly (Notonecta sp.) meal as an alternative protein source for sheep: Effects on performance, nutrient intake, nitrogen balance, and fermentation parameters 将水蝇(Notonecta sp.)粉作为绵羊的替代蛋白质来源:对生产性能、营养摄入、氮平衡和发酵参数的影响。
IF 1.7 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-11-17 DOI: 10.1111/asj.70006
Lizbeth E. Robles Jimenez, Navid Ghavipanje, Manuela Renna, Octavio Alonso Castelán Ortega, Einar Vargas-Bello-Pérez, Manuel Gonzalez-Ronquillo

In this study, the inclusion of water fly (Notonecta sp., NT) meal was compared with conventional protein sources such as soybean meal (SBM) and fish meal (FM) in diets destined for sheep, with specific reference to growth performance, nutrient intake, nitrogen balance, and in vitro rumen fermentation parameters. For 21 days, 18 male Suffolk lambs were randomly assigned to three experimental diets fed: (1) SBM at 130 g/kg dry matter (DM), as a plant-based protein diet; (2) FM at 50 g/kg DM, as an animal-based protein diet; and (3) NT at 60 g/kg DM, as an insect-based protein diet, for ad libitum feed intake. DM intake was similar among the treatments. The digestibility of DM (p = 0.006) and organic matter (p = 0.002) in the NT group was lower than that of SBM. In vitro rumen fermentation data showed that there were no differences between the treatments for DM degradation and the production of microbial crude protein. No differences were observed among the treatments in terms of enteric methane production. The NT diet produced the lowest NH3-N at hours 12 and 24 (p = 0.032 and 0.021, respectively). Overall, the dietary inclusion of NT for fattening lambs could be an alternative feeding strategy without deleterious effects on animal performance.

本研究比较了在绵羊日粮中添加水蝇(Notonecta sp.,NT)粉与传统蛋白质来源(如豆粕(SBM)和鱼粉(FM))的效果,特别关注了生长性能、营养摄入量、氮平衡和体外瘤胃发酵参数。将 18 只雄性萨福克羔羊随机分配到三种试验日粮中饲喂 21 天:(1) 130 克/千克干物质 (DM) 的 SBM,作为植物性蛋白质日粮;(2) 50 克/千克 DM 的 FM,作为动物性蛋白质日粮;(3) 60 克/千克 DM 的 NT,作为昆虫性蛋白质日粮,自由采食。各处理的DM摄入量相似。NT组的DM消化率(p = 0.006)和有机物消化率(p = 0.002)低于SBM组。体外瘤胃发酵数据显示,各处理之间的 DM 降解和微生物粗蛋白产量没有差异。在肠道甲烷产量方面,各处理之间也未观察到差异。在第 12 小时和第 24 小时,NT 日粮产生的 NH3-N 最低(p = 0.032 和 0.021)。总之,在育肥羔羊日粮中添加 NT 可作为一种替代饲喂策略,且不会对动物的生产性能产生有害影响。
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引用次数: 0
Effects of quercetagetin on the growth performance, nutrient digestibility, slaughter performance, meat quality, and antioxidant capacity of broiler chickens 槲皮素对肉鸡生长性能、营养消化率、屠宰性能、肉质和抗氧化能力的影响
IF 1.7 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-11-17 DOI: 10.1111/asj.70008
Hui-qing Liang, Dong-feng Fan, Wen-yue Hu, Feng-yang Wu, Kai Tan, Peng-yu Zhao, Shuai-juan Han, Bao-jiang Chen

This study investigated the effects of quercetagetin (QG) on growth performance, nutrient digestibility, meat quality, and antioxidant capacity of broilers. Four hundred 1-day-old Cobb broilers were randomly divided into five diets, each with eight replicates and 10 birds per replicate. The diets included a basal diet, and four diets with 25, 50, 100, and 200 mg/kg QG supplemented in basal diet. Body weight on d 21, average daily gain, and average daily feed intake on days 1–21 were quadratically (p < 0.05) increased with increasing QG supplementation. The apparent digestibility of crude protein, ether extract, and total phosphorus increased linearly (p < 0.05) from day 1 to 21, and increased quadratically (p < 0.05) from day 22 to 42. The L* values of leg muscles were lower (p < 0.05) in QG groups than control group. QG supplementation quadratically (p < 0.05) elevated glutathione peroxidase (GSH-Px) activity and reduced malondialdehyde (MDA) levels in serum. The L* value was negatively correlated with GSH-Px. These results suggested that QG supplementation (50–100 mg/kg) enhanced early growth, nutrient digestibility, and antioxidant status in broilers, highlighting its functional properties and potential as an additive to improve broiler productivity.

本研究探讨了槲皮素(QG)对肉鸡生长性能、营养物质消化率、肉质和抗氧化能力的影响。将 400 只 1 日龄科布肉鸡随机分为 5 种日粮,每种日粮有 8 个重复,每个重复 10 只鸡。日粮包括基础日粮和在基础日粮中添加 25、50、100 和 200 mg/kg QG 的四种日粮。第 21 天的体重、平均日增重和第 1-21 天的平均日采食量呈二次曲线(p
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引用次数: 0
Estimation of genetic and non-genetic effects on productive life of Iranian Holstein dairy cows 估计遗传和非遗传对伊朗荷斯坦奶牛生产寿命的影响。
IF 1.7 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-11-13 DOI: 10.1111/asj.70010
Reza Reisi-Vanani, Saeid Ansari-Mahyari, Abbas Pakdel, Roger I. Cue

Understanding the factors that influence the lifespan of dairy cows is crucial for enhancing their productive life (PL). This study aimed to investigate the impact of genetic and environmental effects on the PL of Holstein cows. Data included 82,505 cows from 1952 sires that calved for the first time between 2001 and 2016. PL was defined from first calving to culling. Proportional hazard models, assuming a piecewise Weibull distribution of the baseline hazard function, were utilized to account for time-dependent effects, such as herd size variations, year-season, milk yield, fat and protein contents, and the time-independent fixed effect of age at first calving. Herd-year and sire effects were considered as random effects. All effects showed significant associations with PL (p < 0.001). The relative risk of culling was higher in heifers that calved at an older age and cows that calved during the cold season. Moreover, cows with lower production had a significantly shorter PL compared with high-producing cows. The effective heritability in the absence of censored data was estimated at 0.15. These findings suggest that greater attention should be paid to regular and accurate breeding programs, which are essential for enhancing profitability and the PL of Iranian dairy cows.

了解影响奶牛寿命的因素对于提高奶牛的生产寿命(PL)至关重要。本研究旨在调查遗传和环境影响对荷斯坦奶牛生产寿命的影响。数据包括在2001年至2016年期间首次产犊的1952头母牛的82505头奶牛。PL的定义是从首次产犊到淘汰。比例危险模型假定基线危险函数为片断Weibull分布,用于考虑与时间相关的影响,如牛群规模变化、年份-季节、产奶量、脂肪和蛋白质含量,以及与时间无关的初产年龄固定影响。牛群年份和父系影响被视为随机效应。所有效应都与 PL 有明显的相关性(p
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引用次数: 0
Impact of the mare colostral immunoglobulins on the expression of TLR3, TLR4, and TLR7 in foals 母马初乳免疫球蛋白对马驹体内 TLR3、TLR4 和 TLR7 表达的影响。
IF 1.7 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-11-10 DOI: 10.1111/asj.70007
Anna Migdał, Łukasz Migdał, Maria Oczkowicz, Barbara Tombarkiewicz, Adam Okólski

Colostrum contains substances such as hormones, enzymes, polyamides, nucleic acid derivatives, and amino acid derivatives and also includes immunomodulating substances, proline-rich polypeptides, immunoglobulins (Ig) as well as bacteriostatic compounds. The aim of the study was to evaluate the impact of colostral Ig on the level of expression of selected Toll-like receptor genes (TLR3, TLR4, and TLR7). The experiments were conducted on 25 Polish Pony foals. Blood samples were collected according to the following scheme: before first suckling, at the 1st, 3rd, 5th, 10th, 20th, and 30th, day of age. Colostrum was obtained before the first suckling, 24 hr, and 3 days after the delivery. Gene expression analyses were performed on Illumina Eco using a commercial kit TaqMan®MGB probes. The quality of colostrum was assessed via refractometer and BRIX value. The total Ig level was calculated from the spectrophotometric method. IgG levels were measured using ELISA assay. The quality of colostrum significantly correlated with TLR4 and TLR7 expression. Foals that ingested colostrum with low Ig content displayed a higher level of TLR4 gene expression, while in the case of TLR7 the opposite trend was shown. This result indicates that colostrum may play an important role in shaping the mechanisms of building the immune system's response to bacterial pathogens.

初乳含有激素、酶、多酰胺、核酸衍生物和氨基酸衍生物等物质,还包括免疫调节物质、富含脯氨酸的多肽、免疫球蛋白(Ig)以及抑菌化合物。研究的目的是评估初乳 Ig 对某些 Toll 样受体基因(TLR3、TLR4 和 TLR7)表达水平的影响。实验对象是 25 匹波兰矮种马。按照以下方案采集血液样本:初乳前、1、3、5、10、20 和 30 日龄时。初乳在第一次哺乳前、分娩后 24 小时和 3 天采集。使用商业试剂盒 TaqMan®MGB 探针在 Illumina Eco 上进行基因表达分析。初乳质量通过折射仪和 BRIX 值进行评估。总 Ig 水平通过分光光度法计算。IgG水平通过ELISA检测法进行测量。初乳的质量与 TLR4 和 TLR7 的表达明显相关。摄入 Ig 含量低的初乳的小马驹的 TLR4 基因表达水平较高,而 TLR7 的表达水平则呈相反趋势。这一结果表明,初乳可能在形成免疫系统对细菌病原体的反应机制方面发挥着重要作用。
{"title":"Impact of the mare colostral immunoglobulins on the expression of TLR3, TLR4, and TLR7 in foals","authors":"Anna Migdał,&nbsp;Łukasz Migdał,&nbsp;Maria Oczkowicz,&nbsp;Barbara Tombarkiewicz,&nbsp;Adam Okólski","doi":"10.1111/asj.70007","DOIUrl":"10.1111/asj.70007","url":null,"abstract":"<p>Colostrum contains substances such as hormones, enzymes, polyamides, nucleic acid derivatives, and amino acid derivatives and also includes immunomodulating substances, proline-rich polypeptides, immunoglobulins (Ig) as well as bacteriostatic compounds. The aim of the study was to evaluate the impact of colostral Ig on the level of expression of selected Toll-like receptor genes (<i>TLR3</i>, <i>TLR4</i>, and <i>TLR7</i>). The experiments were conducted on 25 Polish Pony foals. Blood samples were collected according to the following scheme: before first suckling, at the 1st, 3rd, 5th, 10th, 20th, and 30th, day of age. Colostrum was obtained before the first suckling, 24 hr, and 3 days after the delivery. Gene expression analyses were performed on Illumina Eco using a commercial kit TaqMan®MGB probes. The quality of colostrum was assessed via refractometer and BRIX value. The total Ig level was calculated from the spectrophotometric method. IgG levels were measured using ELISA assay. The quality of colostrum significantly correlated with <i>TLR4</i> and <i>TLR7</i> expression. Foals that ingested colostrum with low Ig content displayed a higher level of <i>TLR4</i> gene expression, while in the case of <i>TLR7</i> the opposite trend was shown. This result indicates that colostrum may play an important role in shaping the mechanisms of building the immune system's response to bacterial pathogens.</p>","PeriodicalId":7890,"journal":{"name":"Animal Science Journal","volume":"95 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142612462","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Modeling impact of improved forage cultivation on milk productivity and feed sufficiency in semiarid tropics of central India: A doubly robust analysis. 印度中部半干旱热带地区改良饲草种植对牛奶生产率和饲料充足性的影响建模:双重稳健分析
IF 1.7 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2024-01-01 DOI: 10.1111/asj.70009
Bishwa Bhaskar Choudhary, Purushottam Sharma, Priyanka Singh, Deepak Upadhyay, Sunil Kumar, Gaurendra Gupta, Sita Ram Kantwa, Vinod Kumar Wasnik, Mahendra Prasad

The study using cross-sectional data collected from 300 dairy farmers has analyzed the factors affecting adoption of improved forage technologies and its impact on milk yield and feed sufficiency in central region. We used inverse-propensity-weighting regression adjustment (IPWRA) method as main technique for impact evaluation and checked the robustness of the results using matching methods. Our findings suggest that education status, adult cattle unit, animal breed type, off-farm income activities, farm size, and access to training and market significantly influence adoption of improved forage technologies and practices. Further, the adoption led to a significant increase in daily milk yield (1.07 to 1.34 L), total dry matter availability by over 27%, and green fodder availability by around 80%. Ration balancing has been identified as a significant concern in the study region. Consequently, the study suggests that adopting a comprehensive approach is necessary to address the issue of proper ration balancing and fully harness the production potential of dairy animals.

本研究利用从 300 名奶牛场主收集的横截面数据,分析了中部地区采用改良饲草技术的影响因素及其对牛奶产量和饲料充足率的影响。我们使用反倾向加权回归调整法(IPWRA)作为影响评估的主要技术,并使用匹配方法检验了结果的稳健性。我们的研究结果表明,教育状况、成年牛单位、动物品种类型、非农业收入活动、农场规模以及获得培训和进入市场的机会对改良饲草料技术和实践的采用有显著影响。此外,采用这些技术后,日产奶量显著提高(从 1.07 升提高到 1.34 升),干物质总供应量提高了 27% 以上,青饲料供应量提高了约 80%。在研究地区,口粮平衡是一个重要问题。因此,研究表明,有必要采取综合方法来解决适当的日粮平衡问题,并充分发挥奶牛的生产潜力。
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引用次数: 0
Causative alleles for chondrodysplastic dwarfism, factor XI deficiency, and factor XIII deficiency in the Kumamoto sub-breed of Japanese Brown cattle
IF 2 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-11-01 DOI: 10.1111/asj.13882
Hirokazu Matsumoto, Satoshi Kimura, Ryo Saito, Makoto Takeichi, Atsushi Kashimura, Toshiaki Inenaga

Japanese Brown cattle are the second most popular Wagyu breed, and the Kumamoto sub-breed shows better daily gain and carcass weight. One of the breeding objectives for this sub-breed is to reduce genetic defects. Chondrodysplastic dwarfism and factor VIII deficiency have been identified as genetic diseases in the Kumamoto sub-breed. Previously, we detected individuals in the Kumamoto sub-breed with causative alleles of genetic diseases identified in Japanese Black cattle. In the current study, 11 mutations responsible for genetic diseases in the Wagyu breeds were analyzed to evaluate the risk of genetic diseases in the Kumamoto sub-breed. Genotyping revealed the causative mutations of chondrodysplastic dwarfism, factor XI deficiency, and factor XIII deficiency and suggested the appearance of affected animals in this sub-breed. DNA testing for these diseases is needed to prevent economic loses in beef production using the Kumamoto sub-breed.

日本棕色牛是第二受欢迎的和牛品种,熊本亚种表现出更好的日增重和胴体重。这个亚种的育种目标之一是减少遗传缺陷。软骨发育不良侏儒症和因子VIII缺乏症已被确定为熊本亚种的遗传疾病。以前,我们在熊本亚种中发现了日本黑牛遗传疾病的致病等位基因。本研究分析了和牛品种中导致遗传疾病的11个突变,以评估熊本亚种遗传疾病的风险。需要对这些疾病进行DNA检测,以防止使用熊本亚种的牛肉生产的经济损失。
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引用次数: 0
Application of linear and machine learning models to genomic prediction of fatty acid composition in Japanese Black cattle 线性和机器学习模型在日本黑牛脂肪酸组成基因组预测中的应用
IF 2 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-11-01 DOI: 10.1111/asj.13883
Motohide Nishio, Keiichi Inoue, Aisaku Arakawa, Kasumi Ichinoseki, Eiji Kobayashi, Toshihiro Okamura, Yo Fukuzawa, Shinichiro Ogawa, Masaaki Taniguchi, Mika Oe, Masayuki Takeda, Takehiro Kamata, Masaru Konno, Michihiro Takagi, Mario Sekiya, Tamotsu Matsuzawa, Yoshinobu Inoue, Akihiro Watanabe, Hiroshi Kobayashi, Eri Shibata, Akihumi Ohtani, Ryu Yazaki, Ryotaro Nakashima, Kazuo Ishii

We collected 3180 records of oleic acid (C18:1) and monounsaturated fatty acid (MUFA) measured using gas chromatography (GC) and 6960 records of C18:1 and MUFA measured using near-infrared spectroscopy (NIRS) in intermuscular fat samples of Japanese Black cattle. We compared genomic prediction performance for four linear models (genomic best linear unbiased prediction [GBLUP], kinship-adjusted multiple loci [KAML], BayesC, and BayesLASSO) and five machine learning models (Gaussian kernel [GK], deep kernel [DK], random forest [RF], extreme gradient boost [XGB], and convolutional neural network [CNN]). For GC-based C18:1 and MUFA, KAML showed the highest accuracies, followed by BayesC, XGB, DK, GK, and BayesLASSO, with more than 6% gain of accuracy by KAML over GBLUP. Meanwhile, DK had the highest prediction accuracy for NIRS-based C18:1 and MUFA, but the difference in accuracies between DK and KAML was slight. For all traits, accuracies of RF and CNN were lower than those of GBLUP. The KAML extends GBLUP methods, of which marker effects are weighted, and involves only additive genetic effects; whereas machine learning methods capture non-additive genetic effects. Thus, KAML is the most suitable method for breeding of fatty acid composition in Japanese Black cattle.

采用气相色谱法测定了日本黑牛肌间脂肪样品中的油酸(C18:1)和单不饱和脂肪酸(MUFA)含量3180条,近红外光谱法测定了C18:1和MUFA含量6960条。我们比较了四种线性模型(基因组最佳线性无偏预测[GBLUP]、亲缘关系调整多位点[KAML]、BayesC和BayesLASSO)和五种机器学习模型(高斯核[GK]、深度核[DK]、随机森林[RF]、极端梯度增强[XGB]和卷积神经网络[CNN])的基因组预测性能。对于基于gc的C18:1和MUFA, KAML的准确率最高,其次是BayesC、XGB、DK、GK和BayesLASSO, KAML的准确率比GBLUP提高6%以上。同时,DK对NIRS-based C18:1和MUFA的预测精度最高,但DK与KAML的预测精度差异不大。对于所有性状,RF和CNN的准确率均低于GBLUP。KAML扩展了GBLUP方法,其中标记效应是加权的,并且只涉及加性遗传效应;而机器学习方法捕捉非加性遗传效应。因此,KAML是最适合日本黑牛脂肪酸组成的育种方法。
{"title":"Application of linear and machine learning models to genomic prediction of fatty acid composition in Japanese Black cattle","authors":"Motohide Nishio,&nbsp;Keiichi Inoue,&nbsp;Aisaku Arakawa,&nbsp;Kasumi Ichinoseki,&nbsp;Eiji Kobayashi,&nbsp;Toshihiro Okamura,&nbsp;Yo Fukuzawa,&nbsp;Shinichiro Ogawa,&nbsp;Masaaki Taniguchi,&nbsp;Mika Oe,&nbsp;Masayuki Takeda,&nbsp;Takehiro Kamata,&nbsp;Masaru Konno,&nbsp;Michihiro Takagi,&nbsp;Mario Sekiya,&nbsp;Tamotsu Matsuzawa,&nbsp;Yoshinobu Inoue,&nbsp;Akihiro Watanabe,&nbsp;Hiroshi Kobayashi,&nbsp;Eri Shibata,&nbsp;Akihumi Ohtani,&nbsp;Ryu Yazaki,&nbsp;Ryotaro Nakashima,&nbsp;Kazuo Ishii","doi":"10.1111/asj.13883","DOIUrl":"10.1111/asj.13883","url":null,"abstract":"<p>We collected 3180 records of oleic acid (C18:1) and monounsaturated fatty acid (MUFA) measured using gas chromatography (GC) and 6960 records of C18:1 and MUFA measured using near-infrared spectroscopy (NIRS) in intermuscular fat samples of Japanese Black cattle. We compared genomic prediction performance for four linear models (genomic best linear unbiased prediction [GBLUP], kinship-adjusted multiple loci [KAML], BayesC, and BayesLASSO) and five machine learning models (Gaussian kernel [GK], deep kernel [DK], random forest [RF], extreme gradient boost [XGB], and convolutional neural network [CNN]). For GC-based C18:1 and MUFA, KAML showed the highest accuracies, followed by BayesC, XGB, DK, GK, and BayesLASSO, with more than 6% gain of accuracy by KAML over GBLUP. Meanwhile, DK had the highest prediction accuracy for NIRS-based C18:1 and MUFA, but the difference in accuracies between DK and KAML was slight. For all traits, accuracies of RF and CNN were lower than those of GBLUP. The KAML extends GBLUP methods, of which marker effects are weighted, and involves only additive genetic effects; whereas machine learning methods capture non-additive genetic effects. Thus, KAML is the most suitable method for breeding of fatty acid composition in Japanese Black cattle.</p>","PeriodicalId":7890,"journal":{"name":"Animal Science Journal","volume":"94 1","pages":""},"PeriodicalIF":2.0,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"71419927","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sunflower cake versus soybean meal and alfalfa for nitrogen utilization when crude protein and non-fiber carbohydrate levels are equivalent 在粗蛋白质和非纤维碳水化合物水平相当的情况下,葵花籽饼与豆粕和苜蓿的氮利用率比较
IF 2 3区 农林科学 Q2 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2023-10-27 DOI: 10.1111/asj.13881
Chunyan Liu, Sanae Asano, Nae Ishii, Takuma Kashimura, Keita Niimi, Takuya Nomizo, Youichi Numata, Kei Takahashi, Hiroshi Kajikawa

The reported efficiency of N usage by sunflower cake (SFC) was inferior to that of soybean meal (SBM) in a study in which the non-fiber carbohydrate (NFC) content was lower in the SFC diet. Here, we adjusted crude protein (CP) and NFC levels to near-equivalence among three diets containing SFC or SBM for four non-lactating Holstein cows. Alfalfa hay was also added to the comparison. The results demonstrated that the total digestible nutrient contents were not significantly different among the diets. Intake N, fecal N, absorbed N, urinary N, and retained N did not differ significantly among the diets. The efficiency of N usage in the body (retained N/absorbed N) did not differ significantly among the diets. No between-diet difference was observed in the protein- and energy-related ruminal and blood properties, including the estimated microbial protein synthesis in the rumen. These results suggest that regardless of the quality and balance of amino acids in a feed, the efficiency of N usage can be improved by a supply of digestible carbohydrates, which leads to an increase in ruminal microbial protein.

在非纤维碳水化合物(NFC)含量较低的向日葵饼饲粮中,向日葵饼(SFC)对氮的利用效率低于豆粕(SBM)。本研究将4头非泌乳荷斯坦奶牛的粗蛋白质(CP)和NFC水平调整至接近相等的水平。苜蓿干草也被添加到比较中。结果表明,饲粮中总可消化养分含量差异不显著。饲粮中摄入氮、粪氮、吸收氮、尿氮和保留氮无显著差异。不同饲粮对体内氮的利用效率(保留氮/吸收氮)无显著差异。在与蛋白质和能量相关的瘤胃和血液特性(包括瘤胃中微生物蛋白质的估计合成)方面,两种饲粮之间没有观察到差异。综上所述,无论饲料中氨基酸的质量和平衡如何,可通过提供可消化碳水化合物来提高氮的利用效率,从而提高瘤胃微生物蛋白的含量。
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引用次数: 0
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