Animals最新文献

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The genetic basis for Tibetan sheep adaptation to different high-altitude environments remains unknown. This study conducted whole-genome resequencing on 80 Tibetan sheep individuals from four major distribution areas on the Qinghai-Tibet Plateau. Based on the high-quality single-nucleotide polymorphisms (SNPs) obtained, an analysis of population-level genomic selection signals was performed. Population genomic analysis revealed that Tibetan sheep distributed across China originated in northern China but showed evidence of gene flow from South Asian sheep. Between populations from extremely high-altitude and mid-altitude regions, selection analyses identified five strongly positive selected genes (HIF1AN [Hypoxia Inducible Factor 1 Alpha Subunit Inhibitor], HBE1 [Hemoglobin Subunit Epsilon 1], HBE2 [Hemoglobin Subunit Epsilon 2], TNFAIP3 [TNF Alpha Induced Protein 3], RAD50 [RAD50 Double Strand Break Repair Protein]). These genes are associated with adaptation to hypoxia and intense UV radiation in high-altitude environments. Selection analyses between populations from extremely high-altitude and mid-altitude regions identified five strongly selected genes (HIF1AN [Hypoxia Inducible Factor 1 Alpha Subunit Inhibitor], HBE1 [Hemoglobin Subunit Epsilon 1], HBE2 [Hemoglobin Subunit Epsilon 2], TNFAIP3 [TNF Alpha Induced Protein 3], RAD50 [RAD50 Double Strand Break Repair Protein]) associated with hypoxia and intense UV radiation in high-altitude environments. Comparative genomic analyses of populations in cold and arid environments identified several candidate genes related to energy and water homeostasis, as well as hair development (TP53 [Tumor Protein P53], ATG101 [Autophagy Related 101], ATP12A [ATPase H+/K+ Transporting Non-Gastric Alpha2 Subunit], KRT80 [Keratin 80], KRT7 [Keratin 7]). Additionally, Tibetan sheep in the high-altitude arid deserts exhibit stronger adaptive selection for energy homeostasis and water utilization; meanwhile, the HIF-1 [Hypoxia Inducible Factor 1] signaling pathway helps counteract oxidative stress induced by extreme water scarcity in the plateau environment. Our study supports the hypothesis that Tibetan sheep originated in northern China and identifies distinct adaptive features in the Tibetan sheep genome corresponding to their habitats.

Laboratory mice are the most widely used model organisms in biomedical and behavioral research, yet growing concerns regarding reproducibility and translational validity have highlighted the substantial influence of housing and husbandry conditions on experimental outcomes. Although domestication is often assumed to have rendered laboratory mice fully adapted to artificial environments, evidence from ethology indicates that many core behavioral and physiological needs remain conserved. As a result, standard laboratory housing may generate chronic stress, alter behavior, and introduce systematic bias into experimental data. This narrative review critically examines how ethological constraints persisting after domestication interact with key environmental factors, social housing, environmental enrichment, ambient temperature, and lighting regimes to shape welfare and experimental validity in laboratory mice. Rather than providing an exhaustive overview of mouse behavior, the review adopts a problem-oriented and solution-focused approach, highlighting specific welfare-related mechanisms that can distort behavioral and physiological readouts. Particular attention is given to social isolation and aggression in male mice, the role of nesting material in mitigating thermal stress, and the effects of circadian disruption under standard and reversed light-dark cycles. By integrating ethological theory with laboratory animal welfare research, this review argues that housing conditions should be regarded as integral components of experimental design rather than secondary technical variables. Addressing welfare-related bias through evidence-based refinement strategies is essential for improving reproducibility, enhancing data interpretability, and strengthening the scientific validity of mouse-based research.

Lipopolysaccharide (LPS) is widely used to model immune stress in weaned piglets, but it does not fully replicate the pathophysiological alterations induced by live bacterial infection. This study therefore established an oral Salmonella enterica (SE) challenge model and systematically compared its effects with those of LPS to evaluate its potential as a complementary immune stress paradigm. Forty piglets were assigned to five groups: control (saline), LPS (intraperitoneal, 100 μg/kg BW), and three SE groups receiving low-, middle-, or high-dose oral SE (1 × 10⁸ CFU/mL, 2 × 10⁸ CFU/mL, or 3 × 10⁸ CFU/mL in a 10 mL saline volume, respectively). Both LPS and SE significantly reduced average daily gain, while only SE challenge decreased colon length. A transient rectal temperature elevation occurred at 8 h in all challenged groups, persisting at 12 h in the LPS and high-dose SE groups. Serum cytokine analysis revealed that LPS induced early but transient interleukin-12 and tumor necrosis factor-α elevation at 8 h, followed by sustained suppression of interferon-γ, interleukin-6, and interleukin-8. In contrast, the middle-dose SE triggered robust increases in multiple pro-inflammatory cytokines at 24 h. Both challenges significantly reduced the CD4⁺/CD8⁺ T cell ratios in blood and lymphoid organs and decreased intestinal interleukin-10 levels. SE infection produced more severe intestinal pathology, including dose-dependent villus perforations, microvillus disorganization, and mitochondrial cristae vacuolization, beyond the villus shortening and goblet cell reduction observed in both groups. While both LPS and SE induced immune stress and intestinal injury, SE infection caused more severe and comprehensive pathophysiological alterations. Oral administration of 2 × 10⁹ CFU SE for 24 h established a physiologically relevant immune stress model that effectively mimics natural Salmonella infection in weaned piglets, providing a valuable tool for studying enteric diseases and evaluating interventions.

Weaning stress frequently compromises intestinal integrity and nutrient absorption in piglets and induces structural perturbations in the gut microbiota. This study investigated the effects of dietary Paramylon, a linear β-1,3-glucan from Euglena gracilis, on growth and intestinal function. A total of 32 healthy, 21-day-old weaned piglets (male, castrated, Duroc × Landrace × Yorkshire) were randomly allocated to four groups: control, 0.025%, 0.05%, and 0.1% Paramylon (8 pigs/group). The results showed that 0.05% dietary Paramylon quadratically increased average daily gain and feed intake (p < 0.05). Serum TC content significantly increased, while the serum urea level significantly decreased (p < 0.05). This optimal dose was used for mechanistic exploration. Dietary 0.05% Paramylon notably enhanced ileal morphology, increasing the villus height to crypt depth ratio (p < 0.01) and significantly improving apparent nutrient digestibility and ileal β-amylase activity (p < 0.05). The expression levels of SLC7A1 and GLUT2 in ileum tissues were significantly upregulated (p < 0.05). The expression level of SLC7A7 in the liver was also increased (p < 0.05). This nutrient transport-promoting effect was further confirmed in IPEC-J2 cells, which manifested because 10 ng/mL of pure Paramylon significantly upregulated the gene expressions of SLC38A2, EAAT3, PEPT1, and GLUT2 (p < 0.05). KEGG enrichment analysis on the ileum indicated that differentially abundant metabolites were enriched in amino acid-related metabolic pathways. Furthermore, the 16s sequencing results revealed that Romboutsia was significantly enriched in the Paramylon group. In conclusion, Paramylon, as an effective dietary supplement, helps promote nutrient digestion and absorption in weaned piglets and contributes to maintaining intestinal health.

Although many long-distance migratory birds choose stable wintering sites and staging posts, irruptive migrants may exhibit considerable interannual variability in their migratory patterns, often depending on food availability. The Franklin's gull (Leucophaeus pipixcan) is a common long-distance migrant along Chile's coast during the austral summer. Using census data from three estuaries in central Chile (2006-2023), we analyzed variation in summer populations in relation to chlorophyll-a (chl-a) concentration along the migration route, used as a proxy for food availability. The best model predicting the number of gulls reaching Chile included a negative effect of chl-a concentration on the Peruvian coast (0-10° S) during winter (June-July). Considering the time lag associated with the transformation of phytoplankton into seagull food, this result suggests that primary productivity along the route may influence how far south these birds migrate in search of food. We also found a negative correlation between the summer abundance of Franklin's gulls in Chile and an eBird index for the species in Peru during the same period, suggesting redistribution of individuals between the two countries in response to resource availability. Models such as ours provide a useful tool for understanding and managing populations of migratory waterbirds.

Over the last century, anthropogenic activities have contributed to habitat degradation and fragmentation but have also affected the individual health of animals. In this study, we investigated the effect of environmental differences on the gut microbiome of Herring Gulls (Larus argentatus) by collecting fresh faecal samples from ten geographically different populations in the UK, including captive and wild birds, and comparing the resulting gut microbiome diversity and composition. A significantly higher alpha diversity was identified in captive gulls than in urban and suburban gulls for the 46 sequenced samples. When comparing gut microbiome composition, urban inhabitants exhibited a higher abundance of Ligilactobacillus and a lower abundance of Streptococcus than suburban gulls. Such differences could suggest a highly polluted environment for urban-dwelling gulls, while suburban populations could have a wider foraging range and a more diverse diet. In addition, samples from Bristol, West Kirby, Gloucester and Liverpool were all characterised by a significantly higher abundance of one or more of the other bacterial taxa. The high proportion of Mycoplasma could indicate avian mycoplasmosis in the Liverpool population. This study sheds light on the understudied subject of the wild avian gut microbiome and its possible application to wildlife health and disease management.

Coastal pond-to-mangrove restoration has become a prominent Nature-based Solution, yet its short-term ecological effects on waterbird communities remain unclear. We assessed taxonomic, functional, and compositional responses of waterbirds to large-scale restoration in Bamen Bay, Hainan Island, using BACI-style comparisons between restored and unrestored aquaculture ponds in 2021 and 2023. Restored areas exhibited higher taxonomic α diversity and functional richness (p < 0.001), coinciding with rapid habitat diversification following hydrological reconnection. Species richness (p < 0.001), Shannon diversity (p < 0.01), and functional richness (p < 0.01) were consistently higher in restored areas than in aquaculture ponds. In contrast, β diversity patterns diverged between habitats: restored areas remained relatively stable, whereas aquaculture ponds showed greater between-year compositional change (p < 0.05). Guild-specific responses revealed contrasting patterns: herons showed higher diversity in restored habitats (p < 0.05), whereas shorebirds exhibited no significant changes (p > 0.05), consistent with their dependence on open mudflats that were only partially retained. Although no significant declines were detected, functional richness tended to be lower in 2023 (p > 0.05), and ongoing mudflat loss suggests potential long-term risks for mudflat specialists, warranting extended monitoring. Taken together, our findings suggest that effective pond-to-mangrove restoration in Bamen Bay should balance mangrove expansion with the retention of tidal flats and managed shallow-water habitats to support diverse waterbird assemblages.

Treponeme-associated hoof disease (TAHD) is an emerging disease of free-ranging elk (Cervus canadensis) in the northwestern United States. Affected elk develop chronic foot lesions, lameness, debilitation, and an apparent increase in mortality, but the onset of lameness and associated changes in activity are not fully understood. We evaluated the accuracy of a newly developed leg-mounted tri-axial accelerometer monitor (Advanced Telemetry Systems) on captive elk and collected monitor-derived data to assess activity before and during an experimental TAHD challenge. Monitors provided reliable data with 85% overall accuracy of the continuous onboard classification of activity as standing, moving, or bedded against direct visual observation using seven healthy elk. Further, following TAHD challenge, monitor-derived data were able to detect that treatment elk exhibiting abnormal locomotion spent more time bedded and less time moving or standing. During the challenge period, treatment elk spent roughly 10% more of the day bedded than control elk. These findings suggest that leg-mounted activity monitors can detect changes in elk activity and may serve as a useful tool for future wildlife disease monitoring efforts.

Sea turtles are a vital part of the marine ecosystem in the Maldives. While five species have been recorded in-water in the country, only two have been historically known to nest here: hawksbills and greens. In this study, we present cumulative data from targeted nest monitoring in combination with ad hoc reports from citizen scientists and marine biologists from 2018 to 2024, with the aim of providing the first comprehensive multi-year dataset on sea turtle nesting activity in the Maldives. Sea turtle nests were recorded from nearly all atolls. The majority were laid by green turtles (n = 1086), in addition to a small number of hawksbill (n = 47), olive ridley (n = 14) and unknown species (n = 65) nests. Nesting occurs year-round, with a peak during the southwest monsoon season from June to September. Median hatching success rate was 90.91% (SD = 15.87) and incubation lasted a median of 59 days (SD = 4.79). Nest inundation and illegal take were identified as the main threats to sea turtle nests, while incidences of egg predation were an exception. The findings of this study will help to clarify conservation priorities and management strategies for sea turtles in the Maldives.