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PROBING PLANT METABOLISM WITH NMR. 利用核磁共振探测植物代谢。
Pub Date : 2003-11-28 DOI: 10.1146/ANNUREV.ARPLANT.52.1.499
R. Ratcliffe, Y. Shachar-Hill
Analytical methods for probing plant metabolism are taking on new significance in the era of functional genomics and metabolic engineering. Among the available methods, nuclear magnetic resonance (NMR) spectroscopy is a technique that can provide insights into the integration and regulation of plant metabolism through a combination of in vivo and in vitro measurements. Thus NMR can be used to identify, quantify, and localize metabolites, to define the intracellular environment, and to explore pathways and their operation. We review these applications and their significance from a metabolic perspective. Topics of current interest include applications of NMR to metabolic flux analysis, metabolite profiling, and metabolite imaging. These and other areas are discussed in relation to NMR investigations of intermediary carbon and nitrogen metabolism. We conclude that metabolic NMR has a continuing role to play in the development of a quantitative understanding of plant metabolism and in the characterization of metabolic phenotypes.
在功能基因组学和代谢工程的时代,研究植物代谢的分析方法具有新的意义。在现有的方法中,核磁共振(NMR)光谱是一种通过体内和体外测量相结合,可以深入了解植物代谢的整合和调节的技术。因此,核磁共振可用于鉴定、量化和定位代谢物,定义细胞内环境,并探索途径及其运作。我们从代谢的角度综述了这些应用及其意义。当前感兴趣的主题包括核磁共振在代谢通量分析、代谢物谱分析和代谢物成像中的应用。这些和其他领域的讨论与中间碳和氮代谢的核磁共振研究有关。我们得出的结论是,代谢核磁共振在植物代谢的定量理解和代谢表型表征的发展中发挥着持续的作用。
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引用次数: 172
CHLAMYDOMONAS AS A MODEL ORGANISM. 衣藻是一种模式生物。
Pub Date : 2003-11-28 DOI: 10.1146/ANNUREV.ARPLANT.52.1.363
E. H. Harris
The unicellular green alga Chlamydomonas offers a simple life cycle, easy isolation of mutants, and a growing array of tools and techniques for molecular genetic studies. Among the principal areas of current investigation using this model system are flagellar structure and function, genetics of basal bodies (centrioles), chloroplast biogenesis, photosynthesis, light perception, cell-cell recognition, and cell cycle control. A genome project has begun with compilation of expressed sequence tag data and gene expression studies and will lead to a complete genome sequence. Resources available to the research community include wild-type and mutant strains, plasmid constructs for transformation studies, and a comprehensive on-line database.
单细胞绿藻衣藻的生命周期简单,易于分离突变体,为分子遗传学研究提供了越来越多的工具和技术。目前使用该模型系统的主要研究领域包括鞭毛结构和功能、基体(中心粒)遗传学、叶绿体生物发生、光合作用、光感知、细胞-细胞识别和细胞周期控制。一个基因组计划已经开始与表达序列标签数据的汇编和基因表达研究,并将导致一个完整的基因组序列。可供研究团体使用的资源包括野生型和突变株、用于转化研究的质粒构建以及一个全面的在线数据库。
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引用次数: 678
ISOPRENE EMISSION FROM PLANTS. 植物释放异戊二烯。
Pub Date : 2003-11-28 DOI: 10.1146/ANNUREV.ARPLANT.52.1.407
T. Sharkey, Sansun Yeh
Very large amounts of isoprene are emitted from vegetation, especially from mosses, ferns, and trees. This hydrocarbon flux to the atmosphere, roughly equal to the flux of methane, has a large effect on the oxidizing potential of the atmosphere. Isoprene emission results from de novo synthesis by the deoxyxylulose phosphate/methyl erythritol 4-phosphate pathway in plastids. Dimethylallyl pyrophosphate made by this pathway is converted to isoprene by isoprene synthase. Isoprene synthase activity in plants has a high pH optimum and requirement for Mg2+ that is consistent with its location inside chloroplasts. Isoprene emission costs the plant significant amounts of carbon, ATP, and reducing power. Researchers hypothesize that plants benefit from isoprene emission because it helps photosynthesis recover from short high-temperature episodes. The evolution of isoprene emission may have been important in allowing plants to survive the rapid temperature changes that can occur in air because of the very low heat capacity of isoprene relative to water.
大量的异戊二烯从植物,尤其是苔藓、蕨类植物和树木中释放出来。这种进入大气的碳氢化合物流量,大致相当于甲烷的流量,对大气的氧化电位有很大的影响。异戊二烯的释放是在质体中通过磷酸脱氧纤维素糖/甲基赤藓糖醇4-磷酸途径重新合成的。经此途径产生的焦磷酸二甲基烯丙基经异戊二烯合成酶转化为异戊二烯。异戊二烯合成酶在植物体内具有较高的pH最适值和对Mg2+的需要量,这与异戊二烯合成酶在叶绿体内的位置一致。异戊二烯的排放消耗了大量的碳、ATP和还原功率。研究人员假设植物从异戊二烯释放中受益,因为它有助于光合作用从短暂的高温事件中恢复。由于异戊二烯的热容量相对于水来说非常低,因此异戊二烯排放的演变可能对植物在空气中可能发生的快速温度变化中存活下来很重要。
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引用次数: 593
MOLECULAR ENGINEERING OF C4 PHOTOSYNTHESIS. c4光合作用的分子工程。
Pub Date : 2003-11-28 DOI: 10.1146/ANNUREV.ARPLANT.52.1.297
M. Matsuoka, R. Furbank, H. Fukayama, M. Miyao
The majority of terrestrial plants, including many important crops such as rice, wheat, soybean, and potato, are classified as C3 plants that assimilate atmospheric CO2 directly through the C3 photosynthetic pathway. C4 plants such as maize and sugarcane evolved from C3 plants, acquiring the C4 photosynthetic pathway to achieve high photosynthetic performance and high water- and nitrogen-use efficiencies. The recent application of recombinant DNA technology has made considerable progress in the molecular engineering of C4 photosynthesis over the past several years. It has deepened our understanding of the mechanism of C4 photosynthesis and provided valuable information as to the evolution of the C4 photosynthetic genes. It also has enabled us to express enzymes involved in the C4 pathway at high levels and in desired locations in the leaves of C3 plants for engineering of primary carbon metabolism.
大多数陆生植物,包括许多重要的作物,如水稻、小麦、大豆和马铃薯,都被归类为C3植物,它们通过C3光合作用途径直接吸收大气中的二氧化碳。C4植物如玉米和甘蔗由C3植物进化而来,通过C4光合途径获得高光合性能和高水氮利用效率。近年来,重组DNA技术在C4光合作用分子工程中的应用取得了长足的进展。它加深了我们对C4光合作用机理的认识,为C4光合作用基因的进化提供了有价值的信息。它还使我们能够在C3植物叶片的所需位置高水平表达参与C4途径的酶,以进行初级碳代谢工程。
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引用次数: 223
GUARD CELL SIGNAL TRANSDUCTION. 保护细胞信号转导。
Pub Date : 2003-11-28 DOI: 10.1146/ANNUREV.ARPLANT.52.1.627
J. Schroeder, G. J. Allen, V. Hugouvieux, J. Kwak, D. Waner
Guard cells surround stomatal pores in the epidermis of plant leaves and stems. Stomatal pore opening is essential for CO2 influx into leaves for photosynthetic carbon fixation. In exchange, plants lose over 95% of their water via transpiration to the atmosphere. Signal transduction mechanisms in guard cells integrate hormonal stimuli, light signals, water status, CO2, temperature, and other environmental conditions to modulate stomatal apertures for regulation of gas exchange and plant survival under diverse conditions. Stomatal guard cells have become a highly developed model system for characterizing early signal transduction mechanisms in plants and for elucidating how individual signaling mechanisms can interact within a network in a single cell. In this review we focus on recent advances in understanding signal transduction mechanisms in guard cells.
植物叶和茎表皮的气孔周围有保护细胞。气孔打开是CO2进入叶片进行光合固碳的必要条件。作为交换,植物95%的水分通过蒸腾作用流失到大气中。保护细胞的信号转导机制整合了激素刺激、光信号、水分状态、CO2、温度等环境条件,通过调节气孔开度来调节不同条件下的气体交换和植物的生存。气孔保护细胞已经成为一个高度发达的模型系统,用于表征植物早期信号转导机制,并阐明单个信号转导机制如何在单个细胞的网络中相互作用。在这篇综述中,我们重点介绍了保护细胞信号转导机制的最新进展。
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引用次数: 1163
CIRCADIAN RHYTHMS IN PLANTS. 植物的昼夜节律。
Pub Date : 2003-11-28 DOI: 10.1146/ANNUREV.ARPLANT.52.1.139
C. R. McClung
Circadian rhythms, endogenous rhythms with periods of approximately 24 h, are widespread in nature. Although plants have provided many examples of rhythmic outputs and our understanding of photoreceptors of circadian input pathways is well advanced, studies with plants have lagged in the identification of components of the central circadian oscillator. Nonetheless, genetic and molecular biological studies, primarily in Arabidopsis, have begun to identify the components of plant circadian systems at an accelerating pace. There also is accumulating evidence that plants and other organisms house multiple circadian clocks both in different tissues and, quite probably, within individual cells, providing unanticipated complexity in circadian systems.
昼夜节律,即周期约为24小时的内源性节律,在自然界中普遍存在。尽管植物提供了许多节律输出的例子,并且我们对昼夜节律输入途径的光感受器的理解也很先进,但对植物的研究在识别中央昼夜节律振荡器的组成部分方面滞后。尽管如此,主要以拟南芥为研究对象的遗传和分子生物学研究已经开始以更快的速度确定植物昼夜节律系统的组成部分。也有越来越多的证据表明,植物和其他生物在不同的组织中,很可能在单个细胞中,都有多个生物钟,这为昼夜节律系统提供了意想不到的复杂性。
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引用次数: 254
THE PLASTID DIVISION MACHINE. 质体分裂机。
Pub Date : 2003-11-28 DOI: 10.1146/ANNUREV.ARPLANT.52.1.315
K. Osteryoung, R. McAndrew
Plastid division is essential for the maintenance of plastid populations in cells undergoing division and for the accumulation of large chloroplast numbers in photosynthetic tissues. Although the mechanisms mediating plastid division are poorly understood, ultrastructural studies imply this process is accomplished by a dynamic macromolecular machine organized into ring structures at the plastid midpoint. A key component of the engine that powers this machine is the motor-like protein FtsZ, a cytoskeletal GTPase of endosymbiotic origin that forms a ring at the plastid division site, similar to the function of its prokaryotic relatives in bacterial cytokinesis. This review considers the phylogenetic distribution and structural properties of two recently identified plant FtsZ protein families in the context of their distinct roles in plastid division and describes current evidence regarding factors that govern their placement at the division site. Because of their evolutionary and mechanistic relationship, the process of bacterial cell division provides a valuable, though incomplete, paradigm for understanding plastid division in plants.
质体分裂对于维持正在分裂的细胞中的质体群体和光合组织中大量叶绿体的积累是必不可少的。尽管介导质体分裂的机制尚不清楚,但超微结构研究表明,这一过程是由质体中点组织成环状结构的动态大分子机器完成的。驱动这台机器的发动机的一个关键组成部分是类似马达的蛋白质FtsZ,这是一种起源于内共生的细胞骨架GTPase,它在质体分裂位点形成一个环,类似于它在细菌细胞质分裂中的原核亲戚的功能。这篇综述考虑了最近发现的两个植物FtsZ蛋白家族在质体分裂中不同作用的系统发育分布和结构特性,并描述了目前关于控制它们在分裂位点位置的因素的证据。由于它们的进化和机制关系,细菌细胞分裂过程为理解植物质体分裂提供了一个有价值的,尽管不完整的范式。
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引用次数: 136
DEFENSIVE RESIN BIOSYNTHESIS IN CONIFERS. 针叶树的防御性树脂生物合成。
Pub Date : 2003-11-28 DOI: 10.1146/ANNUREV.ARPLANT.52.1.689
Susan C. Trapp, R. Croteau
Tree killing bark beetles and their vectored fungal pathogens are the most destructive agents of conifer forests worldwide. Conifers defend against attack by the constitutive and inducible production of oleoresin, a complex mixture of mono-, sesqui-, and diterpenoids that accumulates at the wound site to kill invaders and both flush and seal the injury. Although toxic to the bark beetle and fungal pathogen, oleoresin also plays a central role in the chemical ecology of these boring insects, from host selection to pheromone signaling and tritrophic level interactions. The biochemistry of oleoresin terpenoids is reviewed, and the regulation of production of this unusual plant secretion is described in the context of bark beetle infestation dynamics with respect to the function of the turpentine and rosin components. Recent advances in the molecular genetics of terpenoid biosynthesis provide evidence for the evolutionary origins of oleoresin and permit consideration of genetic engineering strategies to improve conifer defenses as a component of modern forest biotechnology.
树皮甲虫及其病媒真菌病原体是全球针叶林最具破坏性的病原体。针叶树通过组成性和诱导性的油树脂来防御攻击,油树脂是一种复杂的单萜类、半萜类和二萜类化合物的混合物,它们在伤口部位积聚,杀死入侵者,并清除和密封伤口。尽管对树皮甲虫和真菌病原体有毒,但从寄主选择到信息素信号传导和三营养水平的相互作用,油树脂在这些无聊昆虫的化学生态中也起着核心作用。本文综述了油松脂萜类化合物的生物化学研究进展,并从松节油和松香成分的功能角度描述了这种不寻常的植物分泌物的产生调控。萜类生物合成分子遗传学的最新进展为油树脂的进化起源提供了证据,并允许考虑基因工程策略来改善针叶树防御,作为现代森林生物技术的一个组成部分。
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引用次数: 391
CYTOKININ METABOLISM AND ACTION. 细胞分裂素的代谢和作用。
Pub Date : 2003-11-28 DOI: 10.1146/ANNUREV.ARPLANT.52.1.89
D. Mok, M. Mok
Cytokinins are structurally diverse and biologically versatile. The chemistry and physiology of cytokinin have been studied extensively, but the regulation of cytokinin biosynthesis, metabolism, and signal transduction is still largely undefined. Recent advances in cloning metabolic genes and identifying putative receptors portend more rapid progress based on molecular techniques. This review centers on cytokinin metabolism with connecting discussions on biosynthesis and signal transduction. Important findings are summarized with emphasis on metabolic enzymes and genes. Based on the information generated to date, implications and future research directions are presented.
细胞分裂素具有结构多样性和生物多样性。细胞分裂素的化学和生理学已被广泛研究,但细胞分裂素的生物合成、代谢和信号转导的调控仍在很大程度上不明确。最近在克隆代谢基因和鉴定推定受体方面的进展预示着基于分子技术的更快速的进展。本文以细胞分裂素代谢为中心,结合生物合成和信号转导等方面进行综述。总结了重要的发现,重点是代谢酶和基因。在此基础上,提出了研究的启示和未来的研究方向。
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引用次数: 1122
FUNCTION AND MECHANISM OF ORGANIC ANION EXUDATION FROM PLANT ROOTS. 植物根系有机阴离子分泌的功能与机制。
Pub Date : 2001-06-01 DOI: 10.1146/ANNUREV.ARPLANT.52.1.527
P. Ryan, E. Delhaize, D. Jones
The rhizosphere is the zone of soil immediately surrounding plant roots that is modified by root activity. In this critical zone, plants perceive and respond to their environment. As a consequence of normal growth and development, a large range of organic and inorganic substances are exchanged between the root and soil, which inevitably leads to changes in the biochemical and physical properties of the rhizosphere. Plants also modify their rhizosphere in response to certain environmental signals and stresses. Organic anions are commonly detected in this region, and their exudation from plant roots has now been associated with nutrient deficiencies and inorganic ion stresses. This review summarizes recent developments in the understanding of the function, mechanism, and regulation of organic anion exudation from roots. The benefits that plants derive from the presence of organic anions in the rhizosphere are described and the potential for biotechnology to increase organic anion exudation is highlighted.
根际是植物根系周围的土壤区域,受根系活动的影响。在这个关键地带,植物感知并对环境做出反应。在正常生长发育过程中,根与土壤之间大量的有机和无机物质的交换,必然导致根际生物化学和物理性质的变化。植物也会改变它们的根际以响应特定的环境信号和压力。有机阴离子在该地区普遍存在,它们从植物根部渗出,现在与营养缺乏和无机离子胁迫有关。本文综述了根系有机阴离子分泌的功能、机制和调控方面的最新进展。植物从根际有机阴离子的存在中获得的好处被描述,并强调了生物技术增加有机阴离子分泌的潜力。
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引用次数: 1342
期刊
Annual review of plant physiology and plant molecular biology
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