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Climate change and environmental drivers of Gim (Pyropia yezoensis) aquaculture: evidence from Wando, South Korea 气候变化和yezoensis水产养殖的环境驱动因素:来自韩国莞岛的证据
IF 2.4 3区 农林科学 Q2 FISHERIES Pub Date : 2026-03-13 DOI: 10.1007/s10499-026-02489-z
EunYoung Baek, Ae Rim So, Peter Y. Wui

Gim (Pyropia yezoensis) is Korea’s most commercially important marine product, supplying over 80% of global demand and sustaining coastal livelihoods. Its export value has risen from USD 100 million in 2010 to nearly USD 1 billion in 2024, underscoring its economic importance. Yet Gim cultivation is highly sensitive to environmental variability and increasingly vulnerable to climate stress. This study analyzes the effects of seawater temperature, rainfall, sunlight duration, and wind speed on Gim production using 8 years of monthly data (2016–2023) from Wando, South Korea’s leading production site. A second-degree polynomial regression with 1-month-lagged rainfall and sunlight duration was applied to capture nonlinear and delayed ecological responses. Results show that seawater temperature is the dominant driver. Yields peak within a narrow 10–15 °C thermal window but decline at both cooler and warmer extremes. Wind speed also exerts nonlinear effects, enhancing growth under moderate conditions but reducing yields at higher intensities. Rainfall and lagged sunlight duration contribute positively but more weakly, emphasizing the role of joint ecological interactions rather than single drivers. In the short term, adaptive strategies such as optimized seeding schedules and expanded land-based seeding systems could stabilize yields. Long-term measures should prioritize breeding heat-tolerant strains, diversifying cultivation sites, and investing in technological innovation. Although limited to Wando, the findings provide robust evidence of Gim’s climate sensitivity and offer practical guidance for improving the resilience and sustainability of seaweed aquaculture under changing conditions.

金(yezoensis)是韩国最重要的商业海洋产品,供应全球80%以上的需求并维持沿海生计。其出口额从2010年的1亿美元增长到2024年的近10亿美元,凸显了其经济重要性。然而,金条种植对环境变化高度敏感,并且越来越容易受到气候压力的影响。本研究使用韩国主要生产基地Wando的8年月度数据(2016-2023)分析了海水温度、降雨量、日照时间和风速对gimm产量的影响。采用滞后1个月的降雨和日照时数的二阶多项式回归来捕捉非线性和延迟的生态响应。结果表明,海水温度是主要驱动因素。产量在狭窄的10-15°C热窗内达到峰值,但在较冷和较暖的极端温度下均下降。风速也具有非线性效应,在中等条件下促进生长,但在较高强度下降低产量。降雨和滞后日照时数对气候变化的影响是正向的,但作用较弱,强调了联合生态相互作用的作用,而不是单一的驱动因素。在短期内,优化播种计划和扩大陆基播种系统等适应性策略可以稳定产量。长期措施应优先考虑培育耐热品种、多样化栽培地点和投资于技术创新。虽然仅限于Wando,但这些发现为Gim的气候敏感性提供了强有力的证据,并为在不断变化的条件下提高海藻养殖的复原力和可持续性提供了实用指导。
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引用次数: 0
Emerging challenges and sustainability pathways in global aquaculture of mud crab (genus Scylla) 青蟹(Scylla)全球水产养殖面临的新挑战及可持续发展途径
IF 2.4 3区 农林科学 Q2 FISHERIES Pub Date : 2026-03-13 DOI: 10.1007/s10499-026-02506-1
Murak, Khor Waiho, Hanafiah Fazhan, Muhammad Sajjad Ahmad, Kuo-Wei Lan, Hongyu Ma, Mhd Ikhwanuddin

Mud crab aquaculture (genus Scylla) has expanded substantially across Southeast Asia in response to increasing market demand and improvements in hatchery and grow-out production systems. Despite this expansion, the sector continues to face environmental, economic, and genetic constraints that affect production stability and long-term sustainability. Existing studies commonly address these issues separately, with limited integration across production stages and management contexts. This review evaluates current knowledge on the major challenges affecting mud crab aquaculture, including habitat degradation, water quality deterioration, disease outbreaks, high production costs, market volatility, labor intensity, and reduced genetic diversity. Evidence across hatchery, nursery, and grow-out systems indicates that environmental stressors influence disease occurrence and survival, while economic pressures limit investment in biosecurity, feed improvement, and technological adoption. In addition, reliance on wild-sourced broodstock and insufficient genetic monitoring may reduce adaptive capacity in cultured stocks. By organizing these findings within a production-stage perspective, this review highlights common constraints, identifies practical management implications, and outlines directions for strengthening coastal governance, broodstock management, and technological adoption. The synthesis aims to support more coordinated approaches to sustainable development in mud crab aquaculture.

随着市场需求的增加以及孵化场和生长生产系统的改进,东南亚地区的泥蟹水产养殖(Scylla属)已大幅扩大。尽管规模不断扩大,但该行业仍面临着影响生产稳定性和长期可持续性的环境、经济和遗传制约因素。现有的研究通常分别解决这些问题,在生产阶段和管理环境之间进行有限的集成。本综述评估了目前关于影响泥蟹水产养殖的主要挑战的知识,包括生境退化、水质恶化、疾病暴发、高生产成本、市场波动、劳动强度和遗传多样性减少。孵化场、苗圃和生长系统的证据表明,环境压力因素影响疾病的发生和生存,而经济压力限制了对生物安全、饲料改进和技术采用的投资。此外,对野生源亲鱼的依赖和遗传监测不足可能会降低养殖鱼类的适应能力。通过从生产阶段的角度组织这些发现,本综述突出了共同的制约因素,确定了实际管理影响,并概述了加强沿海治理、亲鱼管理和技术采用的方向。该综合报告的目的是支持采取更加协调的方法促进泥蟹水产养殖的可持续发展。
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引用次数: 0
Microplastic exposure reduces multi-trophic biomass yield in a freshwater integrated aquaculture system 微塑料暴露降低了淡水综合水产养殖系统的多营养生物量产量
IF 2.4 3区 农林科学 Q2 FISHERIES Pub Date : 2026-03-11 DOI: 10.1007/s10499-026-02508-z
Gökhan Tunçelli, Muhammad Hanif Azhar, Devrim Memiş, Nuray Erkan, Idil Can-Tuncelli, Özkan Özden, Eda Dagsuyu, İsmet Burcu Turkyilmaz Mutlu, Refiye Yanardag

Freshwater integrated multi-trophic aquaculture (IMTA) systems are increasingly used to enhance nutrient utilization efficiency; however, their performance under microplastic (MP) exposure remains poorly characterized. This study evaluated the effects of water-borne and feed-borne polyethylene (PE) MP (10–20 µm) on biomass production and filtration performance in a three-compartment freshwater IMTA system comprising rainbow trout (Oncorhynchus mykiss), freshwater mussels (Unionidae), and duckweed (Lemna minor). Fluorescent spherical MPs were applied in four treatments (n = 3 tanks per treatment): control (no MPs), feed-borne MPs (5 particles per 100 g feed), water-borne MPs (35 particles L⁻1 at fish-tank inflow), and combined exposure. The exposure phase lasted 45 days with 15-day sampling intervals, followed by a 45-day depuration phase. Fish growth responses differed modestly among treatments during exposure, with transient reductions observed in MP-exposed groups relative to the control at intermediate sampling points. Mussel filtration capacity showed limited variation among treatments, with no consistent treatment-specific suppression across time. Duckweed biomass accumulation was lower under combined exposure compared with the control, whereas variability was higher in MP treatments during early growth stages. An integrated multi-trophic performance index calculated from terminal measurements indicated moderate reductions in overall system productivity under combined exposure relative to the control. During depuration, growth trajectories across treatments converged. These results indicate that elevated microplastic exposure can influence biomass distribution and productivity within freshwater IMTA systems, particularly under combined exposure scenarios.

淡水综合多营养养殖(IMTA)系统越来越多地用于提高养分利用效率;然而,它们在微塑性(MP)暴露下的性能仍然很差。本研究在一个由虹鳟鱼(Oncorhynchus mykiss)、淡水贻贝(Unionidae)和浮藻(Lemna minor)组成的三室淡水IMTA系统中,评估了水生和饲料性聚乙烯(PE) MP(10-20µm)对生物质产量和过滤性能的影响。荧光球形MPs应用于四种处理(每个处理n = 3个罐):对照(没有MPs),饲料传播的MPs(每100 g饲料5个颗粒),水传播的MPs(鱼缸流入35个颗粒L - 1)和联合暴露。暴露阶段持续45天,采样间隔15天,然后是45天的净化阶段。在暴露期间,不同处理的鱼的生长反应略有不同,在中间采样点,与对照组相比,暴露于mp组的鱼的生长反应出现了短暂的减少。贻贝过滤能力在不同处理之间变化有限,没有一致的处理特异性抑制。与对照相比,复合处理下浮萍生物量积累较低,而在生长早期,MP处理的变异性较高。从终端测量计算的综合多营养性能指数表明,与对照相比,在联合暴露下,整个系统的生产力有适度下降。在净化过程中,不同处理的生长轨迹趋于一致。这些结果表明,微塑料暴露的增加会影响淡水IMTA系统中的生物量分布和生产力,特别是在复合暴露情景下。
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引用次数: 0
Modulation of physiological performance and microbiome by reduced dietary protein in juvenile redclaw crayfish Cherax quadricarinatus 降低饲料蛋白质对红爪螯虾幼虾生理性能和微生物组的调节
IF 2.4 3区 农林科学 Q2 FISHERIES Pub Date : 2026-03-10 DOI: 10.1007/s10499-026-02501-6
Paul Nicolás Sarmiento Cárdenas, Santiago Timpanaro, Hernán Javier Sacristán, Ariadna Battista, Alberto Peña-Rodríguez, Manuel Fernando Ariza Botero, Laura Susana López Greco, Liane Stumpf

Previous studies on the optimal protein requirements of freshwater crayfish Cherax quadricarinatus juveniles have mainly focused on growth performance, with limited attention to nutritional physiology and changes in the intestinal microbiome. This study evaluated the effects of reduced dietary protein levels (25%, 30%, 35%, and 37%) on digestive enzymes, energy reserves, hemolymph metabolites, intestinal microbiome, and hepatopancreas histology of juveniles fed for 150 days. The experimental diets were formulated using fish and shrimp meals as animal protein sources, and wheat, rice meals, and cornstarch as plant ingredients. While growth and survival were unaffected by dietary protein, juveniles fed the 25% diet showed reduced lipase activity, increased hepatopancreatic lipid content, lower glycogen reserves, and higher hemolymph glucose concentration. These changes in nutritional physiology were likely influenced not only by dietary protein level but also by interactions among the ratios and sources of dietary protein, lipids, and carbohydrates. The intestinal microbiome of juveniles fed the 25% diet exhibited shifts in bacterial communities and an overall reduction in 20 metabolic pathways. Our results support the use of a diet with 25% crude protein in C. quadricarinatus culture during these early stages, at least temporarily, offering potential economic benefits by reducing feed costs without compromising productive efficiency. This study expands our understanding of the deployed physiological strategy and contributes to the development of balanced diets for juveniles, but also provides new insights into changes in the intestinal microbiome of the species when fed different protein diets.

Graphical Abstract

以往关于淡水螯虾幼虾最佳蛋白质需水量的研究主要集中在生长性能方面,对营养生理和肠道微生物群变化的关注较少。本研究评估了饲料蛋白质水平降低(25%、30%、35%和37%)对喂养150天的幼鱼消化酶、能量储备、血淋巴代谢物、肠道微生物群和肝胰腺组织学的影响。试验饲粮以鱼虾粕为动物蛋白源,以小麦、大米粕和玉米淀粉为植物原料配制。饲料中蛋白质含量不影响幼鱼的生长和存活,但饲料中蛋白质含量为25%的幼鱼表现出脂肪酶活性降低、肝胰脂含量增加、糖原储备降低和血淋巴葡萄糖浓度升高。营养生理学的这些变化可能不仅受到膳食蛋白质水平的影响,还受到膳食蛋白质、脂质和碳水化合物的比例和来源之间的相互作用的影响。喂食25%饲料的幼鱼肠道微生物组表现出细菌群落的变化和20种代谢途径的总体减少。我们的研究结果支持在这些早期阶段使用25%粗蛋白质的饲料,至少是暂时的,通过降低饲料成本而不影响生产效率,提供潜在的经济效益。该研究扩大了我们对部署生理策略的理解,有助于幼鱼均衡饮食的发展,同时也为喂食不同蛋白质饮食时物种肠道微生物组的变化提供了新的见解。图形抽象
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引用次数: 0
Growth performance and digestive enzyme activity in sea cucumber Apostichopus parvimensis fed diets formulated with alternative ingredients 饲料中添加替代成分对小刺参生长性能和消化酶活性的影响
IF 2.4 3区 农林科学 Q2 FISHERIES Pub Date : 2026-03-10 DOI: 10.1007/s10499-026-02503-4
Alexia Omont, Milton Spanopoulos-Zarco, Gabriel Robles-Villegas, Dariel Tovar-Ramírez, Alberto Peña-Rodríguez

The development of efficient and sustainable diets for sea cucumber aquaculture is critical to support the growth of this emerging sector. This study evaluated the effects of four experimental diets (D1 to D4) on juvenile Apostichopus parvimensis during a 4-week feeding trial conducted in triplicate. The experimental diets differed in their main ingredient profiles: D1 was based on fish organic residues (FOR); D2 used a fishmeal–soybean meal–wheat meal mixture; D3 included a brown seaweed meal mix as a wheat meal substitute; and D4 combined higher fishmeal inclusion with the same brown seaweed meal mix. Sea cucumber performance parameters (final weight, weight gain, and specific growth rate), survival, dry body weight, feed conversion ratio (FCR), and digestive enzyme activities (trypsin, lipase, amylase) were measured and analyzed using one-way ANOVA and Tukey’s test. The D4 diet led to the highest FW and SGR, yet exhibited significantly lower dry body weight and a tendency to a lower FCR. Diets D2 and D3 resulted in significant trypsin activity compared to D1 and D4. Diet D2 showed the highest lipase activity but the lowest trypsin activity. Amylase activity was significantly reduced in D4, likely related to the presence of complex seaweed polysaccharides. Overall, these findings provide insight into the effects of dietary ingredients such as FOR, brown seaweeds, and spirulina on growth and digestive physiology of juvenile sea cucumbers, contributing to the development of sustainable diet formulations. Highlights. The study evaluates different feed formulations for juvenile Apostichopus parvimensis. A diet combining fishmeal and brown seaweed (D4) yielded the highest growth performance. Spirulina inclusion enhanced dry matter deposition and trypsin activity. Wheat meal–based diet (D2) led to higher lipase but the lowest trypsin activity. Fish organic residues and spirulina show promising potential for juvenile A. parvimensis diets.

为海参养殖开发高效和可持续的饲料对于支持这一新兴部门的增长至关重要。本研究通过3个重复的4周饲养试验,评价了4种试验饲料(D1 ~ D4)对小刺参幼鱼的影响。试验饲粮的主要成分不同:D1以鱼类有机残留物(FOR)为基础;D2使用鱼粉-豆粉-小麦粉混合物;D3中加入棕藻粉混合物作为小麦粉的替代品;和D4在相同褐藻粉混合物中添加较高的鱼粉。测定海参的生产性能参数(末重、增重和特定生长率)、成活率、干重、饲料系数(FCR)和消化酶活性(胰蛋白酶、脂肪酶、淀粉酶),采用单因素方差分析和Tukey’s检验进行分析。D4日粮的FW和SGR最高,但干重显著降低,FCR有降低的趋势。与D1和D4相比,饲粮D2和D3具有显著的胰蛋白酶活性。饲料D2的脂肪酶活性最高,胰蛋白酶活性最低。淀粉酶活性在D4中显著降低,可能与复合海藻多糖的存在有关。总的来说,这些发现为了解饲料成分如FOR、褐藻和螺旋藻对幼海参生长和消化生理的影响提供了深入的见解,有助于开发可持续的饲料配方。高光。本研究对小野刺参幼鱼不同饲料配方进行了评价。鱼粉+褐藻(D4)的饲料生长性能最高。螺旋藻夹杂物增强了干物质沉积和胰蛋白酶活性。以小麦为基础的日粮(D2)使脂肪酶活性升高,而胰蛋白酶活性降低。鱼类有机残余物和螺旋藻在幼鱼饲料中具有广阔的应用前景。
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引用次数: 0
A preliminary field-based assessment of greenhouse gas emissions from prawn aquaculture ponds in Bangladesh: effects of farm management and water quality 对孟加拉国对虾养殖池塘温室气体排放的初步实地评估:农场管理和水质的影响
IF 2.4 3区 农林科学 Q2 FISHERIES Pub Date : 2026-03-09 DOI: 10.1007/s10499-026-02502-5
Abul Bashar, Richard D. Heal, Md. Zahid Hasan, Abdullah Al Rakib, Md. Ainuddin, Md. Mehedi Alam, Alif Layla Bablee, M. M. R. Jahangir, Niels O. G. Jørgensen, Lars Hestbjerg Hansen, Mohammad Mahfujul Haque

Greenhouse gas (GHG) emissions from coastal aquaculture are an emerging environmental concern, with implications for ecosystem sustainability and climate mitigation. In this preliminary field-based study, we quantified carbon dioxide (CO2), methane (CH4), and nitrous dioxide (N2O) fluxes from 35 randomly selected prawn farms in coastal Bangladesh, at a single time point using the floating chamber method, with concurrent water quality monitoring and farm management surveys, to identify key factors influencing in-pond GHG emissions. Extensive farming systems showed a higher CO2 emission rate (1261.3 ± 727.0 g/ha/day) than semi-intensive farms, while CH4 (10.3 ± 5.60 g/ha/day) and N2O (0.71 ± 0.53 g/ha/day) fluxes were higher in the semi-intensive farms. The total GHG emissions (CO₂ equivalent; CO₂e in a 100-year life span) were lowest in semi-intensive farms (898.3 ± 245.7 g/ha/day). Correlation analysis revealed significant negative associations between total CO2e emissions and salinity, feeding frequency, and carp stocking density, while standing crop showed a positive association. Random forest modelling further revealed that pond biomass, salinity, and feeding rate were important predictors of CO2, whereas CH4 and N2O were primarily determined by water age and water source, respectively. Although this preliminary study was limited by the number of sampled farms and the temporal resolution of sampling, it cautiously proposes frequent water exchange, stocking-density optimization, carp integration, increased feeding frequency, and enhanced farmers’ knowledge as possible options to reduce emissions but warrants further longitudinal investigation.

沿海水产养殖产生的温室气体(GHG)排放是一个新出现的环境问题,对生态系统可持续性和减缓气候变化具有影响。在这项初步的基于实地的研究中,我们使用浮动箱法在单一时间点对孟加拉国沿海35个对虾养殖场的二氧化碳(CO2)、甲烷(CH4)和二氧化氮(N2O)通量进行量化,同时进行水质监测和养殖场管理调查,以确定影响池内温室气体排放的关键因素。粗放型养殖场CO2排放量(1261.3±727.0 g/ha/d)高于半集约型养殖场,CH4(10.3±5.60 g/ha/d)和N2O(0.71±0.53 g/ha/d)通量高于半集约型养殖场。半集约化农场的温室气体总排放量(CO₂当量;CO₂e在100年寿命内)最低(898.3±245.7 g/ha/d)。相关分析显示,CO2e总排放量与盐度、饵料频次、放养密度呈显著负相关,而立木产量呈显著正相关。随机森林模型进一步揭示,池塘生物量、盐度和取食率是CO2的重要预测因子,而CH4和N2O主要由水龄和水源决定。虽然这项初步研究受到采样养殖场数量和采样时间分辨率的限制,但它谨慎地提出了频繁换水、优化放养密度、鲤鱼整合、增加饲养频率和提高农民知识作为减少排放的可能选择,但需要进一步的纵向调查。
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引用次数: 0
Dietary supplementation of Durvillaea potatorum fucoidan enhances the immune responses and improves survival of juvenile black tiger shrimp Penaeus monodon against white spot syndrome virus and acute hepatopancreatic necrosis disease 饲粮中添加马铃薯杜仲岩藻糖聚糖可提高黑虎对虾幼虾对白斑综合征病毒和急性肝胰腺坏死病的免疫应答和存活率
IF 2.4 3区 农林科学 Q2 FISHERIES Pub Date : 2026-03-09 DOI: 10.1007/s10499-026-02507-0
Joseph P. Faisan Jr., Rex Ferdinand M. Traifalgar, Leobert D. de la Peña, Valeriano L. Corre Jr., Mary Jessa Bell B. Pagapulan, Vyenge Erre D. Gayosa

The use of natural immunostimulants as alternatives to antibiotics has gained attention in aquaculture to mitigate disease impacts. In this study, we evaluated fucoidan extracted from giant bull kelp (Durvillaea potatorum) as a dietary additive in black tiger shrimp (Penaeus monodon). Four experimental diets containing increasing levels of fucoidan (0, 1.0, 2.5, and 5.0 g kg−1 diet) were tested for their effects on growth, non-specific immune parameters, and survival against white spot syndrome virus (WSSV) and acute hepatopancreatic necrosis disease (AHPND)-causing Vibrio parahaemolyticus. After 30 days of feeding, fucoidan supplementation did not adversely affect shrimp growth or culture survival, even at the highest inclusion level (5 g kg−1). Non-specific immunological indices, including total hemocyte count (THC), differential hemocyte count (DHC), phenoloxidase (PO) activity, plasma total protein (PTP), and plasma agglutination titer (PAT), were enhanced by fucoidan supplementation, with improvements observed even at 1 g kg−1 relative to the control group. Activation of non-specific immunity translated into increased resistance against WSSV and AHPND, with the highest survival recorded in shrimp fed 5 g kg−1 fucoidan, followed by 2.5 g kg−1. In comparison, similar survival rates against WSSV and AHPND were observed in the unsupplemented control and 1 g kg−1 fucoidan. Overall, this study demonstrates that dietary inclusion of D. potatorum fucoidan at 5 g kg−1 effectively enhances immune responses and disease resistance in P. monodon without negatively impacting growth performance, highlighting its potential as a functional feed additive in shrimp aquaculture.

使用天然免疫刺激剂作为抗生素的替代品在水产养殖中引起了人们的注意,以减轻疾病的影响。在本研究中,我们研究了巨牛海带(Durvillaea potatorum)中提取的岩藻聚糖作为黑虎对虾(Penaeus monodon)的饲料添加剂。研究了四种增加褐藻糖聚糖水平的试验饲料(0、1.0、2.5和5.0 g kg - 1)对生长、非特异性免疫参数以及抗白斑综合征病毒(WSSV)和急性肝胰腺坏死病(AHPND)引起的副溶血性弧菌的存活率的影响。饲喂30天后,即使在最高添加水平(5 g kg−1)时,岩藻糖聚糖也不会对对虾的生长或培养存活率产生不利影响。褐藻糖idan的添加提高了非特异性免疫指标,包括总血细胞计数(THC)、差异血细胞计数(DHC)、酚氧化酶(PO)活性、血浆总蛋白(PTP)和血浆凝集滴度(PAT),甚至在1 g kg−1时也比对照组有所改善。非特异性免疫的激活转化为对WSSV和AHPND的抗性增强,在喂食5 g kg - 1岩藻糖聚糖的对虾中,存活率最高,其次是2.5 g kg - 1。相比之下,在未补充对照和1 g kg−1褐藻糖聚糖中观察到类似的WSSV和AHPND存活率。总体而言,本研究表明,在饲料中添加5 g kg - 1的马铃薯褐藻聚糖可有效增强单螯虾的免疫反应和抗病性,而不会对生长性能产生负面影响,这凸显了其作为对虾养殖功能性饲料添加剂的潜力。
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引用次数: 0
Whole-genome selection signatures in Litopenaeus vannamei: linking population differentiation through selected regions to the tolerance of ammonia/pH stress in offspring 凡纳滨对虾的全基因组选择特征:通过选择区域将种群分化与后代对氨/pH胁迫的耐受性联系起来
IF 2.4 3区 农林科学 Q2 FISHERIES Pub Date : 2026-03-09 DOI: 10.1007/s10499-026-02499-x
Chaoan Guo, Shuo Fu, Yuan Zhang, Jianyong Liu

Litopenaeus vannamei, a key species in global aquaculture, shows excellent growth and adaptability, making it central to shrimp farming. As genetic improvement progresses, the genomic characteristics of L. vannamei populations continue to evolve. To clarify their genetic status, we analyzed selection signals using resequencing data and environmental factors, identifying adaptive genomic regions. In this study, offspring were produced by hybridizing six L. vannamei populations (two breeding and four introduced). The offspring were subjected to ammonia nitrogen and low pH stress experiments, and extreme difference groups were established based on survival time under stress. Whole-genome resequencing was performed on the six original populations and stress groups (320 individuals). After quality control, 17,104,219 high-quality SNPs were obtained. Using the multi-reference population rotation method, we identified population-specific selection regions in six L. vannamei populations through Fst and θπ ratio analyses. Functional enrichment revealed multiple cross-functional modules and conserved genes across populations. This distribution indicates that L. vannamei adaptive evolution features both population differentiation and conservation of core pathways. Further multi-method joint analysis using Fst, θπ ratio, and XP-CLR identified 356 (ammonia nitrogen) and 370 (low pH) candidate genes in the stressed populations. After GO/KEGG annotation, selection signal screening, and ROH detection, five core stress response genes, including Vang and Coq8. Genome-wide selection signal analysis in L. vannamei populations revealed key functional genes, thereby enriching genetic resources and facilitating the breeding of new varieties.

凡纳滨对虾(Litopenaeus vannamei)是全球水产养殖的关键品种,具有良好的生长和适应性,是虾类养殖的核心。随着遗传改良的进行,凡纳梅种群的基因组特征也在不断进化。为了明确它们的遗传状态,我们利用重测序数据和环境因素分析了选择信号,确定了适应性基因组区域。本研究通过6个南美扁豆群体(2个育种群体和4个引种群体)杂交产生子代。对后代进行氨氮和低pH胁迫实验,根据胁迫存活时间建立极端差异组。对6个原始种群和应激组(320个个体)进行全基因组重测序。质量控制后,获得17104219个高质量snp。采用多参考种群轮换法,通过Fst和θπ比分析,确定了6个种群的种群特异性选择区域。功能富集揭示了多个跨功能模块和跨群体的保守基因。这种分布表明,南美扁豆的适应进化既具有种群分化特征,又具有核心途径的保守性。利用Fst、θπ比和XP-CLR等多方法联合分析,鉴定出356个氨氮候选基因和370个低pH候选基因。经过GO/KEGG标注、选择信号筛选、ROH检测,得到了Vang、Coq8等5个核心应激反应基因。通过对凡纳梅居群的全基因组选择信号分析,揭示了关键功能基因,丰富了遗传资源,促进了新品种的选育。
{"title":"Whole-genome selection signatures in Litopenaeus vannamei: linking population differentiation through selected regions to the tolerance of ammonia/pH stress in offspring","authors":"Chaoan Guo,&nbsp;Shuo Fu,&nbsp;Yuan Zhang,&nbsp;Jianyong Liu","doi":"10.1007/s10499-026-02499-x","DOIUrl":"10.1007/s10499-026-02499-x","url":null,"abstract":"<div><p><i>Litopenaeus vannamei</i>, a key species in global aquaculture, shows excellent growth and adaptability, making it central to shrimp farming. As genetic improvement progresses, the genomic characteristics of <i>L. vannamei</i> populations continue to evolve. To clarify their genetic status, we analyzed selection signals using resequencing data and environmental factors, identifying adaptive genomic regions. In this study, offspring were produced by hybridizing six <i>L. vannamei</i> populations (two breeding and four introduced). The offspring were subjected to ammonia nitrogen and low pH stress experiments, and extreme difference groups were established based on survival time under stress. Whole-genome resequencing was performed on the six original populations and stress groups (320 individuals). After quality control, 17,104,219 high-quality SNPs were obtained. Using the multi-reference population rotation method, we identified population-specific selection regions in six <i>L. vannamei</i> populations through <i>F</i><sub><i>st</i></sub> and θπ ratio analyses. Functional enrichment revealed multiple cross-functional modules and conserved genes across populations. This distribution indicates that <i>L. vannamei</i> adaptive evolution features both population differentiation and conservation of core pathways. Further multi-method joint analysis using <i>F</i><sub><i>st</i></sub>, θπ ratio, and XP-CLR identified 356 (ammonia nitrogen) and 370 (low pH) candidate genes in the stressed populations. After GO/KEGG annotation, selection signal screening, and ROH detection, five core stress response genes, including <i>Vang</i> and <i>Coq8</i>. Genome-wide selection signal analysis in <i>L. vannamei</i> populations revealed key functional genes, thereby enriching genetic resources and facilitating the breeding of new varieties.</p></div>","PeriodicalId":8122,"journal":{"name":"Aquaculture International","volume":"34 3","pages":""},"PeriodicalIF":2.4,"publicationDate":"2026-03-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147440902","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Decoupling control of dissolved oxygen and water temperature using a state-space equation-based model predictive controller in recirculating aquaculture systems 基于状态空间方程模型的循环水养殖系统溶解氧与水温解耦控制
IF 2.4 3区 农林科学 Q2 FISHERIES Pub Date : 2026-03-09 DOI: 10.1007/s10499-026-02504-3
Xinhui Zhou, Cheng Liu, Yinfeng Hao, Xianyu Zuo, Liming Zhou, Qingling Duan

In recirculating aquaculture systems, dissolved oxygen and water temperature are two critical water quality indicators that must be maintained within suitable ranges. However, due to the strong coupling between their control processes, regulating only one of these variables makes it difficult to ensure an optimal water environment. To address this issue, a state-space equation-based model predictive controller (MPC) was designed for decoupling control of dissolved oxygen and water temperature. This method first establishes differential equations that can describe the dynamic response characteristics of dissolved oxygen and water temperature, thereby exploring the coupling relationship between them. Subsequently, system identification is employed to transform the established differential equations into a set of state-space equations, which serve as the internal predictive model of the MPC, thereby reducing the computational load while simultaneously enhancing control accuracy and decoupling performance. To verify the reliability of the proposed MPC, tracking control experiments were conducted in both simulated and real aquaculture environments, with the results demonstrating that MPC outperforms the proportional integral differential (PID) controller in both scenarios. Specifically, MPC can maintain a tracking error range of ± 0.4 mg/L for dissolved oxygen and ± 0.15 °C for water temperature in real aquaculture environments, and its control outputs (airflow and hot water flow) are relatively small compared to traditional PID controller. These results further demonstrate that the proposed MPC offers the advantages of strong stability and significant energy savings, making it particularly well suited for multivariable water quality regulation in recirculating aquaculture systems.

在循环水养殖系统中,溶解氧和水温是两个关键的水质指标,必须保持在适当的范围内。然而,由于其控制过程之间的强耦合,仅调节这些变量中的一个很难确保最佳的水环境。为解决这一问题,设计了一种基于状态空间方程的溶解氧与水温解耦控制模型预测控制器(MPC)。该方法首先建立了能够描述溶解氧与水温动态响应特性的微分方程,从而探索溶解氧与水温之间的耦合关系。然后,利用系统辨识将建立的微分方程转化为一组状态空间方程,作为MPC的内部预测模型,从而在减少计算量的同时提高控制精度和解耦性能。为了验证所提出的MPC的可靠性,在模拟和真实水产养殖环境中进行了跟踪控制实验,结果表明MPC在这两种情况下都优于比例积分微分(PID)控制器。具体而言,MPC在真实水产养殖环境中对溶解氧的跟踪误差范围为±0.4 mg/L,对水温的跟踪误差范围为±0.15°C,其控制输出(气流和热水流量)相对于传统PID控制器较小。这些结果进一步表明,所提出的MPC具有很强的稳定性和显著的节能优势,使其特别适合循环水养殖系统中的多变量水质调节。
{"title":"Decoupling control of dissolved oxygen and water temperature using a state-space equation-based model predictive controller in recirculating aquaculture systems","authors":"Xinhui Zhou,&nbsp;Cheng Liu,&nbsp;Yinfeng Hao,&nbsp;Xianyu Zuo,&nbsp;Liming Zhou,&nbsp;Qingling Duan","doi":"10.1007/s10499-026-02504-3","DOIUrl":"10.1007/s10499-026-02504-3","url":null,"abstract":"<div><p>In recirculating aquaculture systems, dissolved oxygen and water temperature are two critical water quality indicators that must be maintained within suitable ranges. However, due to the strong coupling between their control processes, regulating only one of these variables makes it difficult to ensure an optimal water environment. To address this issue, a state-space equation-based model predictive controller (MPC) was designed for decoupling control of dissolved oxygen and water temperature. This method first establishes differential equations that can describe the dynamic response characteristics of dissolved oxygen and water temperature, thereby exploring the coupling relationship between them. Subsequently, system identification is employed to transform the established differential equations into a set of state-space equations, which serve as the internal predictive model of the MPC, thereby reducing the computational load while simultaneously enhancing control accuracy and decoupling performance. To verify the reliability of the proposed MPC, tracking control experiments were conducted in both simulated and real aquaculture environments, with the results demonstrating that MPC outperforms the proportional integral differential (PID) controller in both scenarios. Specifically, MPC can maintain a tracking error range of ± 0.4 mg/L for dissolved oxygen and ± 0.15 °C for water temperature in real aquaculture environments, and its control outputs (airflow and hot water flow) are relatively small compared to traditional PID controller. These results further demonstrate that the proposed MPC offers the advantages of strong stability and significant energy savings, making it particularly well suited for multivariable water quality regulation in recirculating aquaculture systems.</p></div>","PeriodicalId":8122,"journal":{"name":"Aquaculture International","volume":"34 3","pages":""},"PeriodicalIF":2.4,"publicationDate":"2026-03-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147440901","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Reported seaweed diseases in aquaculture: a systematic review 水产养殖中报道的海藻病害:系统综述
IF 2.4 3区 农林科学 Q2 FISHERIES Pub Date : 2026-03-07 DOI: 10.1007/s10499-026-02486-2
Ade Wahyul Fajri Alimin, Kasmiati Kasmiati, Aswin Aswin, Fatchurrachman Fatchurrachman, Nur Yanti Pangloli, Dea Pramita, Winda Wijaya, Rahman Romli, Elmi Nurhaidah Zainuddin, Jamaluddin Fitrah Alam

Since the late 1980s to 2025, at least 16 disease entities have been reported to affect commercially cultivated seaweeds, occurring in both open-water farming systems and nursery facilities. The expansion and intensification of seaweed production have increased the frequency of host–pathogen interactions, a trend further exacerbated by environmental stressors associated with climate change, including ocean warming, salinity fluctuations, and acidification. These conditions have contributed to rising disease incidence, with consequences such as reduced yields and product quality, greater economic losses, and a potential weakening of the overall resilience of the seaweed industry. This review was conducted using a systematic literature review approach by compiling and screening scientific publications from Scopus, Web of Science, SpringerLink, and two additional relevant sources to provide a comprehensive synthesis. Based on the evidence assembled, this review aims to (i) map the relationships between biotic and abiotic factors and the emergence and spatial distribution of diseases across seaweed species and cultivation regions, (ii) examine the economic consequences of disease along the seaweed value chain, and (iii) evaluate key aspects of disease management in seaweed aquaculture systems. Overall, this review provides a scientific basis for shaping research and policy agendas that prioritise risk-based biosecurity, the development of tolerant varieties, early-warning systems and rapid diagnostics, high-resolution environmental monitoring, and strengthened collaborative governance through public–private partnerships to support sustainable and disease-resilient seaweed aquaculture.

自20世纪80年代末至2025年,据报道至少有16种疾病实体影响商业养殖的海藻,发生在开放水域养殖系统和苗圃设施中。海藻生产的扩大和集约化增加了宿主-病原体相互作用的频率,与气候变化相关的环境压力因素(包括海洋变暖、盐度波动和酸化)进一步加剧了这一趋势。这些条件导致疾病发病率上升,其后果是产量和产品质量下降,经济损失更大,并可能削弱海藻产业的整体复原力。本综述采用系统文献综述的方法,通过编译和筛选来自Scopus、Web of Science、SpringerLink和另外两个相关来源的科学出版物,以提供全面的综合。根据收集到的证据,本综述旨在(i)绘制生物和非生物因素与海藻物种和养殖区域疾病的出现和空间分布之间的关系,(ii)检查沿海藻价值链的疾病的经济后果,以及(iii)评估海藻养殖系统中疾病管理的关键方面。总体而言,本综述为制定研究和政策议程提供了科学依据,这些议程应优先考虑基于风险的生物安全、耐受性品种的开发、早期预警系统和快速诊断、高分辨率环境监测以及通过公私伙伴关系加强协作治理,以支持可持续和抗病性海藻养殖。
{"title":"Reported seaweed diseases in aquaculture: a systematic review","authors":"Ade Wahyul Fajri Alimin,&nbsp;Kasmiati Kasmiati,&nbsp;Aswin Aswin,&nbsp;Fatchurrachman Fatchurrachman,&nbsp;Nur Yanti Pangloli,&nbsp;Dea Pramita,&nbsp;Winda Wijaya,&nbsp;Rahman Romli,&nbsp;Elmi Nurhaidah Zainuddin,&nbsp;Jamaluddin Fitrah Alam","doi":"10.1007/s10499-026-02486-2","DOIUrl":"10.1007/s10499-026-02486-2","url":null,"abstract":"<div><p>Since the late 1980s to 2025, at least 16 disease entities have been reported to affect commercially cultivated seaweeds, occurring in both open-water farming systems and nursery facilities. The expansion and intensification of seaweed production have increased the frequency of host–pathogen interactions, a trend further exacerbated by environmental stressors associated with climate change, including ocean warming, salinity fluctuations, and acidification. These conditions have contributed to rising disease incidence, with consequences such as reduced yields and product quality, greater economic losses, and a potential weakening of the overall resilience of the seaweed industry. This review was conducted using a systematic literature review approach by compiling and screening scientific publications from Scopus, Web of Science, SpringerLink, and two additional relevant sources to provide a comprehensive synthesis. Based on the evidence assembled, this review aims to (i) map the relationships between biotic and abiotic factors and the emergence and spatial distribution of diseases across seaweed species and cultivation regions, (ii) examine the economic consequences of disease along the seaweed value chain, and (iii) evaluate key aspects of disease management in seaweed aquaculture systems. Overall, this review provides a scientific basis for shaping research and policy agendas that prioritise risk-based biosecurity, the development of tolerant varieties, early-warning systems and rapid diagnostics, high-resolution environmental monitoring, and strengthened collaborative governance through public–private partnerships to support sustainable and disease-resilient seaweed aquaculture.\u0000</p></div>","PeriodicalId":8122,"journal":{"name":"Aquaculture International","volume":"34 3","pages":""},"PeriodicalIF":2.4,"publicationDate":"2026-03-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147363110","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Aquaculture International
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