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A novel tRNA-Derived Fragment, tRF-23-Z87HFK8SDZ inhibits malignant progression of pancreatic cancer through mediating IRS1 一个新的trna衍生片段,tRF-23-Z87HFK8SDZ通过介导IRS1抑制胰腺癌的恶性进展。
IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-08 DOI: 10.1016/j.abb.2025.110624
Liping Zheng , Jing Wang , Yiyu Shen , Chundong Hu , Bin Wu , Zhongcheng Zhou , Wei Wang

Background

Transfer RNA-derived fragments (tRFs) have emerged as significant actors in cancer progression. Nevertheless, their functions in pancreatic cancer stay poorly understood. This work focuses on the role of tRF-23-Z87HFK8SDZ (tRF-23), a downregulated fragment in pancreatic cancer, and its potential tumor-suppressive functions through the regulation of IRS1.

Methods

RNA sequencing was performed on cancerous and adjacent non-cancerous tissues from pancreatic cancer patients to identify differentially expressed tRFs. RT-qPCR, Kaplan-Meier survival analysis, and various in vivo and in vitro functional assays were performed to assess tRF-23 expression, its effects on cellular processes, and its regulation of IRS1. Dual-luciferase and RNA immunoprecipitation assays proved the interaction between tRF-23 and IRS1.

Results

tRF-23 was considerably downregulated in pancreatic cancer tissues and cells. Lower tRF-23 expression was correlated with poor patient survival. Overexpression of tRF-23 inhibited cell viability, proliferation, and migration, while advancing cell cycle arrest and apoptosis in pancreatic cancer cells. In vivo, tRF-23 reduced tumor growth in a subcutaneous mouse model. tRF-23 directly targeted IRS1, downregulating its protein and mRNA levels, and IRS1 overexpression partially rescued these effects.

Conclusion

tRF-23 suppresses the malignant progression of pancreatic cancer by downregulating IRS1. These findings suggest that the tRF-23/IRS1 axis could act as a prospective therapeutic target in pancreatic cancer.
背景:转移rna衍生片段(tRFs)已成为癌症进展中的重要因素。然而,它们在胰腺癌中的功能仍然知之甚少。本研究的重点是研究tRF-23- z87hfk8sdz (tRF-23)这一下调片段在胰腺癌中的作用,及其通过调控IRS1的潜在肿瘤抑制功能。方法:对胰腺癌患者癌组织和癌旁非癌组织进行RNA测序,鉴定差异表达的tRFs。通过RT-qPCR、Kaplan-Meier生存分析以及各种体内和体外功能分析来评估tRF-23的表达、其对细胞过程的影响以及其对IRS1的调节。双荧光素酶和RNA免疫沉淀实验证实了tRF-23和IRS1之间的相互作用。结果:tRF-23在胰腺癌组织和细胞中明显下调。较低的tRF-23表达与较差的患者生存相关。在胰腺癌细胞中,tRF-23过表达抑制细胞活力、增殖和迁移,同时促进细胞周期阻滞和凋亡。在体内,tRF-23在皮下小鼠模型中抑制肿瘤生长。tRF-23直接靶向IRS1,下调其蛋白和mRNA水平,IRS1过表达部分恢复了这些作用。结论:tRF-23通过下调IRS1抑制胰腺癌恶性进展。这些发现提示tRF-23/IRS1轴可作为胰腺癌的前瞻性治疗靶点。
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引用次数: 0
Mitochondrial redox imbalance and CoQ10 deficiency in Rett syndrome: Insights from patient-derived fibroblasts RETT综合征的线粒体氧化还原失衡和辅酶q10缺乏:来自患者来源的成纤维细胞的见解。
IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-07 DOI: 10.1016/j.abb.2025.110636
Francesco Mengarelli , Valeria Cordone , Alessandra Pecorelli , Mascia Benedusi , Giuseppe Valacchi , Camilla Morresi , Tiziana Bacchetti , Patrick Orlando , Luca Tiano , Sonia Silvestri
Rett syndrome (RTT), a neurodevelopmental disorder primarily affecting females, is characterized by mutations in the MECP2 gene, leading to systemic oxidative stress and mitochondrial dysfunction. This study investigates the role of Coenzyme Q10 (CoQ10), particularly its reduced form ubiquinol, in modulating oxidative stress and mitochondrial function in primary dermal fibroblasts derived from RTT patients with distinct MeCP2 mutations.
Baseline assessments revealed significant CoQ10 deficiencies and elevated reactive oxygen species (ROS) levels, notably in fibroblasts with the T158M mutation. Ubiquinol supplementation effectively restored CoQ10 levels and improved redox balance in these cells. Additionally, treatment influenced mitochondrial dynamics, as evidenced by alterations in the expression of fission and fusion proteins and modulated the activity of paraoxonase 2 (PON2), an enzyme involved in cellular antioxidant defense.
In conclusion, our data suggest that CoQ10 supplementation could mitigate oxidative damage and preserve mitochondrial integrity, but we are far from being able to claim that it can represents an effective therapeutic strategy to complement current pharmacological treatments in RTT patients. Further research is warranted to explore the potential of CoQ10 as an adjunctive treatment, particularly during the early stages of RTT.
Rett综合征(RTT)是一种主要影响女性的神经发育障碍,其特征是MECP2基因突变,导致全身性氧化应激和线粒体功能障碍。本研究探讨了辅酶Q10 (CoQ10),特别是其还原形式泛醇,在来自具有不同MeCP2突变的RTT患者的原代真皮成纤维细胞中调节氧化应激和线粒体功能的作用。基线评估显示CoQ10显著缺乏和活性氧(ROS)水平升高,特别是在T158M突变的成纤维细胞中。补充泛醇有效地恢复了这些细胞中的辅酶q10水平并改善了氧化还原平衡。此外,治疗影响了线粒体动力学,如裂变和融合蛋白表达的改变,并调节了对氧氧化酶2 (PON2)的活性,这是一种参与细胞抗氧化防御的酶。总之,我们的数据表明,补充辅酶q10可以减轻氧化损伤并保持线粒体完整性,但我们还远远不能声称它可以作为RTT患者当前药物治疗的有效治疗策略。进一步的研究需要探索辅酶q10作为辅助治疗的潜力,特别是在RTT的早期阶段。
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引用次数: 0
Lauryl gallate induces apoptosis via p38-MAPK phosphorylation and autophagy in chemoresistant human lung cancer cells 没食子酸月桂酯通过p38-MAPK磷酸化和自噬诱导化疗耐药人肺癌细胞凋亡。
IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-06 DOI: 10.1016/j.abb.2025.110633
Yen-Hsiang Huang , Shur-Hueih Cherng , Ling-Yen Chiu , Kuo-Hsuan Hsu , Jeng-Sen Tseng , Po-Hsin Lee , Gwo-Tarng Sheu , Tsung-Ying Yang
Human lung cancer has taken many lives and chemoresistance generally occurs in patients and reduces patients’ survival. Docetaxel (DOC) and vincristine (VCR) have been widely used in cancer chemotherapy but their efficacy is restricted by P-glycoprotein (P-gp) overexpression. Lauryl gallate (LG) is a plant-derived small molecule which acts as antioxidant in normal cells. Surprisingly, LG also has been shown to control several types of cancer cells and induce apoptosis by way of induction of reactive oxygen species (ROS). To further clarify the anti-lung cancer activity of LG, we evaluated the cytotoxicity of LG using a previously established human A549/DOC resistant subline that has high P-gp expression and a A549/VCR resistant subline to determine their LG sensitivity by MTT assay. The apoptosis and autophagy levels were examined by protein analysis and flow cytometry. Interference of p38-MAPK and ATG5 expression by siRNAs was performed to measure the involvement of these two proteins in apoptosis and autophagy. We found that LG exerts higher cytotoxicity to the target cells when compared with tannic acid (TA) and octyl gallate (OG). Furthermore, LG not only induces apoptosis, it also enhances autophagy in both chemoresistant A549 sublines. When p38-MAPK was knocked down, the apoptosis level was reduced but autophagy was not. Knockdown of ATG5 resulted in significant apoptosis reduction in VCR-resistant A549 cells but less effect was found in DOC-resistant A549 cells. In sum, our data suggested that LG promotes p38-MAPK phosphorylation and induces apoptosis in chemoresistant A549 cells independently with P-gp expression. LG also enhances autophagy-regulated cell death in chemoresistant lung cancer cells.
人类肺癌夺去了许多人的生命,化疗耐药通常发生在患者身上,并降低了患者的生存率。多西紫杉醇(DOC)和长春新碱(VCR)已广泛应用于肿瘤化疗,但p -糖蛋白(P-gp)过表达限制了其疗效。十二烷基没食子酸酯(LG)是一种源自植物的小分子,在正常细胞中起抗氧化剂的作用。令人惊讶的是,LG还被证明可以控制几种类型的癌细胞,并通过诱导活性氧(ROS)诱导细胞凋亡。为了进一步明确LG的抗肺癌活性,我们使用先前建立的具有高P-gp表达的人类A549/DOC耐药亚群和A549/VCR耐药亚群来评估LG的细胞毒性,并通过MTT法确定它们的LG敏感性。用蛋白分析和流式细胞术检测细胞凋亡和自噬水平。通过sirna干扰p38-MAPK和ATG5的表达来检测这两种蛋白在细胞凋亡和自噬中的作用。我们发现,与单宁酸(TA)和没食子酸辛酯(OG)相比,LG对靶细胞具有更高的细胞毒性。此外,LG不仅诱导细胞凋亡,还能增强两种耐药A549亚系的自噬。当p38-MAPK被敲低时,细胞凋亡水平降低,但细胞自噬未发生变化。ATG5敲低可显著减少vcr耐药A549细胞的凋亡,但对doc耐药A549细胞的作用较小。综上所述,我们的数据表明,LG促进p38-MAPK磷酸化,诱导耐药A549细胞凋亡,独立于P-gp的表达。LG还能增强化疗耐药肺癌细胞中自噬调节的细胞死亡。
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引用次数: 0
Study of the antibacterial peptide P8.1: Effect on anionic vesicles using spectroscopic techniques 利用光谱技术研究抗菌肽P8.1对阴离子囊泡的影响。
IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-04 DOI: 10.1016/j.abb.2025.110635
Luis Emanuel Jimenez , Rosa M.S. Alvarez , Paulo Maffia , Axel Hollmann
Antimicrobial peptides (AMPs) are promising complements to antibiotics, yet their membrane-level actions remain incompletely understood. In this work, we characterized how the “de novo” cationic AMP P8.1 interacts with anionic lipid bilayers composed of DPPG (gel phase) or DLPG (fluid phase) using zeta potential, tryptophan and Laurdan fluorescence, Raman microscopy, and a carboxyfluorescein (CF) leakage assay. P8.1 bound both lipids electrostatically, reduced zeta potential, and increased large unilamellar vesicles (LUVs) size. Binding kinetics were faster on DPPG multilamellar vesicles, whereas Trp fluorescence assays showed deeper insertion in DLPG (larger Trp blue-shift and lower acrylamide quenching). Laurdan generalized polarization (GP) increased in DLPG but not in DPPG, indicating reduced water access and higher local order in fluid bilayers. Raman spectra revealed diminished phosphate-band intensity in both systems and, in DLPG, a decreased gauche/trans ratio and narrower 1300 cm−1 band consistent with tighter acyl-chain packing. Difference spectra further showed an amide I shift of P8.1, supporting a random-coil to α-helix transition upon binding to lipids. Finally, P8.1 induced ∼80 % CF leakage in DLPG LUVs within minutes. Together, the data indicate that P8.1 engages phosphate groups of lipids and then modulates bilayer structure in a phase- and mechanics-dependent manner—rigidifying short-chain, fluid DLPG and minimally perturbing gel-phase DPPG—providing mechanistic insight relevant to antibacterial activity.
抗菌肽(AMPs)是抗生素的有希望的补充,但其膜水平的作用仍不完全清楚。在这项工作中,我们利用zeta电位、色氨酸和劳丹荧光、拉曼显微镜和羧基荧光素(CF)泄漏试验,表征了“全新”阳离子AMP P8.1如何与由DPPG(凝胶相)或DPPG(液相)组成的阴离子脂质双分子层相互作用。P8.1通过静电结合两种脂质,降低了zeta电位,增加了大单层囊泡(LUVs)的大小。DPPG多层囊泡的结合动力学更快,而色氨酸荧光分析显示DLPG插入更深(色氨酸蓝移较大,丙烯酰胺猝灭较低)。Laurdan广义极化(GP)在DPPG中增加,而在DPPG中没有增加,表明水通道减少,流体双层的局部秩序更高。拉曼光谱显示,两种体系的磷酸盐带强度都有所减弱,在DLPG中,间扭/反式比降低,1300 cm-1带变窄,与更紧密的酰基链堆积一致。差谱进一步显示了酰胺I的P8.1位移,支持了与脂质结合时随机线圈到α-螺旋的转变。最后,P8.1在几分钟内诱导DLPG LUVs中约80%的CF泄漏。总之,这些数据表明,P8.1结合脂质磷酸基团,然后以相和力学依赖的方式调节双层结构-刚性短链,流体dppg和最小扰动凝胶相dppg -提供了与抗菌活性相关的机制见解。
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引用次数: 0
Swapped domain orders in ZO-1 PDZ3 fusion proteins – implications for binding of established and novel targets ZO-1 PDZ3融合蛋白的交换结构域顺序-对已建立和新靶标结合的影响。
IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-03 DOI: 10.1016/j.abb.2025.110634
Marie Hamsikova , Jan Hurdalek , Leandro Simonetti , Jakub Ptacek , Kristyna Vydra Bousova , Jiri Vondrasek , Ylva Ivarsson , Lucie Zemanova
PDZ domains play key roles in mediating protein-protein interactions by recognizing short PDZ-binding motifs, typically at the C-termini of target proteins. Zonula occludens 1 (ZO-1) is a scaffolding protein that links tight junction proteins to the actin cytoskeleton, and contains three PDZ domains. Here, we focus on its third PDZ (PDZ3_ZO-1) domain, which interacts with the C-terminus of junctional adhesion protein A as well as connexin 45. To investigate how the domain context of the PDZ3_ZO-1 domain affects its folding and function, we previously established two distinct fusions of PDZ3_ZO-1 and a Trp-cage mini-protein. These fusions with swapped domain order result in FD3A with Trp-cage fused C-terminally and FD4A with Trp-cage fused N-terminally. This study aims to explore the extent to which the distinct Trp-cage fusions affect the function of PDZ3_ZO-1 domain in peptide binding.
We find that PDZ3_ZO-1 retains its function, interaction with the connexin 45 peptide, also as part of the fusion proteins. Furthermore, using a phage display approach, we identified a new PDZ3_ZO-1 binding peptide derived from the C-terminal region of methylcytosine dioxygenase TET3. Subsequent validation revealed a significantly higher affinity of PDZ3_ZO-1 for the TET3 peptide as compared to the connexin 45 peptide. Thermodynamic analyses revealed that the swapped domain order conferred distinct effects on the thermodynamic parameters. These results provide insights into the structural and functional adaptability of PDZ domains in engineered proteins, and offer useful principles for the rational design of functional fusion proteins.
PDZ结构域通过识别短的PDZ结合基序(通常位于靶蛋白的c端),在介导蛋白质相互作用中发挥关键作用。Zonula occludens 1 (ZO-1)是一种连接紧密连接蛋白和肌动蛋白细胞骨架的支架蛋白,包含三个PDZ结构域。在这里,我们重点研究了其第三个PDZ (PDZ3_ZO-1)结构域,该结构域与连接粘附蛋白A的c端以及连接蛋白45相互作用。为了研究PDZ3_ZO-1结构域的结构域环境如何影响其折叠和功能,我们之前建立了PDZ3_ZO-1和Trp-cage迷你蛋白的两种不同的融合体。这些交换结构域顺序的熔合导致FD3A具有Trp-cage熔合的c端,FD4A具有Trp-cage熔合的n端。本研究旨在探讨不同的色氨酸笼融合在多大程度上影响PDZ3_ZO-1结构域在肽结合中的功能。我们发现PDZ3_ZO-1保留了其功能,与连接蛋白45肽相互作用,也作为融合蛋白的一部分。此外,利用噬菌体展示方法,我们从甲基胞嘧啶双加氧酶TET3的c端区鉴定了一个新的PDZ3_ZO-1结合肽。随后的验证表明,与连接蛋白45肽相比,PDZ3_ZO-1对TET3肽的亲和力显著提高。热力学分析表明,交换畴序对热力学参数有明显的影响。这些结果为了解工程蛋白中PDZ结构域的结构和功能适应性提供了新的思路,并为功能融合蛋白的合理设计提供了有益的原则。
{"title":"Swapped domain orders in ZO-1 PDZ3 fusion proteins – implications for binding of established and novel targets","authors":"Marie Hamsikova ,&nbsp;Jan Hurdalek ,&nbsp;Leandro Simonetti ,&nbsp;Jakub Ptacek ,&nbsp;Kristyna Vydra Bousova ,&nbsp;Jiri Vondrasek ,&nbsp;Ylva Ivarsson ,&nbsp;Lucie Zemanova","doi":"10.1016/j.abb.2025.110634","DOIUrl":"10.1016/j.abb.2025.110634","url":null,"abstract":"<div><div>PDZ domains play key roles in mediating protein-protein interactions by recognizing short PDZ-binding motifs, typically at the C-termini of target proteins. Zonula occludens 1 (ZO-1) is a scaffolding protein that links tight junction proteins to the actin cytoskeleton, and contains three PDZ domains. Here, we focus on its third PDZ (PDZ3_ZO-1) domain, which interacts with the C-terminus of junctional adhesion protein A as well as connexin 45. To investigate how the domain context of the PDZ3_ZO-1 domain affects its folding and function, we previously established two distinct fusions of PDZ3_ZO-1 and a Trp-cage mini-protein. These fusions with swapped domain order result in FD3A with Trp-cage fused C-terminally and FD4A with Trp-cage fused N-terminally. This study aims to explore the extent to which the distinct Trp-cage fusions affect the function of PDZ3_ZO-1 domain in peptide binding.</div><div>We find that PDZ3_ZO-1 retains its function, interaction with the connexin 45 peptide, also as part of the fusion proteins. Furthermore, using a phage display approach, we identified a new PDZ3_ZO-1 binding peptide derived from the C-terminal region of methylcytosine dioxygenase TET3. Subsequent validation revealed a significantly higher affinity of PDZ3_ZO-1 for the TET3 peptide as compared to the connexin 45 peptide. Thermodynamic analyses revealed that the swapped domain order conferred distinct effects on the thermodynamic parameters. These results provide insights into the structural and functional adaptability of PDZ domains in engineered proteins, and offer useful principles for the rational design of functional fusion proteins.</div></div>","PeriodicalId":8174,"journal":{"name":"Archives of biochemistry and biophysics","volume":"774 ","pages":"Article 110634"},"PeriodicalIF":3.0,"publicationDate":"2025-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145231391","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multifunctional benzimidazolium derivatives as anticancer, antibacterial, and acetylcholinesterase inhibitors: In vitro and molecular docking studies 多功能苯并咪唑衍生物作为抗癌、抗菌和乙酰胆碱酯酶抑制剂:体外和分子对接研究。
IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-02 DOI: 10.1016/j.abb.2025.110630
Metin Yıldırım , Hakan Ünver , Adem Necip , Mehmet Çimentepe , Mehmet Ersatir
In this study, a series of benzimidazolium derivatives were synthesized and characterized using HR-MS, FTIR, 1H NMR, and 13C NMR techniques. Their acetylcholinesterase (AChE) inhibitory potentials, anticancer activities against MCF-7 breast cancer cells, and antibacterial effects against Staphylococcus aureus, Enterococcus faecalis, Pseudomonas aeruginosa, Escherichia coli, as well as resistant strains such as MRSA and MDR Escherichia coli were experimentally evaluated. Additionally, their antibiofilm activities against MRSA and MDR E. coli were also assessed. These experimental findings were further supported by molecular docking studies. Among the tested compounds, compound 6c exhibited the highest AChE inhibitory activity, with an IC50 value of 9.32 μM. It also demonstrated the most potent anticancer activity against MCF-7 cells, with an IC50 value of 1.8 μM. All synthesized compounds exhibited antibacterial activity against both drug-resistant and non-resistant bacterial strains. Furthermore, compound 6c showed the strongest molecular docking interactions with AChE and MRSA-associated proteins, with binding energy scores of −9.386 kcal/mol (4EY7), −8.180 kcal/mol (1 ZGC), and −6.301 kcal/mol (3ZG5), respectively. This is the first report integrating AChE inhibition, anticancer, antibacterial, and antibiofilm evaluations of novel benzimidazolium derivatives in combination with molecular docking, thereby providing a multi-targeted framework for the development of new therapeutic agents against neurodegenerative diseases, cancer, and multidrug-resistant infections.
本研究合成了一系列苯并咪唑衍生物,并利用HR-MS、FTIR、1H NMR和13C NMR等技术对其进行了表征。实验评价了它们对乙酰胆碱酯酶(AChE)的抑制作用、对MCF-7乳腺癌细胞的抑癌活性、对金黄色葡萄球菌、粪肠球菌、铜绿假单胞菌、大肠杆菌以及耐药菌株MRSA和MDR大肠杆菌的抑菌作用。此外,还评估了它们对MRSA和MDR大肠杆菌的抗菌膜活性。这些实验结果得到了分子对接研究的进一步支持。其中化合物6c的AChE抑制活性最高,IC50值为9.32 μM。对MCF-7细胞的抑癌活性最强,IC50值为1.8 μM。所有合成的化合物对耐药和非耐药菌株均表现出抗菌活性。化合物6c与AChE和mrsa相关蛋白的分子对接作用最强,结合能分别为-9.386 kcal/mol (4EY7)、-8.180 kcal/mol (1ZGC)和-6.301 kcal/mol (3ZG5)。这是首个将新型苯并咪唑衍生物乙酰胆碱酯酶抑制、抗癌、抗菌和抗生物膜评价与分子对接相结合的报道,从而为开发新的治疗神经退行性疾病、癌症和多重耐药感染的药物提供了一个多靶点框架。
{"title":"Multifunctional benzimidazolium derivatives as anticancer, antibacterial, and acetylcholinesterase inhibitors: In vitro and molecular docking studies","authors":"Metin Yıldırım ,&nbsp;Hakan Ünver ,&nbsp;Adem Necip ,&nbsp;Mehmet Çimentepe ,&nbsp;Mehmet Ersatir","doi":"10.1016/j.abb.2025.110630","DOIUrl":"10.1016/j.abb.2025.110630","url":null,"abstract":"<div><div>In this study, a series of benzimidazolium derivatives were synthesized and characterized using HR-MS, FTIR, <sup>1</sup>H NMR, and <sup>13</sup>C NMR techniques. Their acetylcholinesterase (AChE) inhibitory potentials, anticancer activities against MCF-7 breast cancer cells, and antibacterial effects against <em>Staphylococcus aureus</em>, <em>Enterococcus faecalis</em>, <em>Pseudomonas aeruginosa</em>, <em>Escherichia coli</em>, as well as resistant strains such as MRSA and MDR <em>Escherichia coli</em> were experimentally evaluated. Additionally, their antibiofilm activities against MRSA and MDR <em>E. coli</em> were also assessed. These experimental findings were further supported by molecular docking studies. Among the tested compounds, compound 6c exhibited the highest AChE inhibitory activity, with an IC<sub>50</sub> value of 9.32 μM. It also demonstrated the most potent anticancer activity against MCF-7 cells, with an IC<sub>50</sub> value of 1.8 μM. All synthesized compounds exhibited antibacterial activity against both drug-resistant and non-resistant bacterial strains. Furthermore, compound 6c showed the strongest molecular docking interactions with AChE and MRSA-associated proteins, with binding energy scores of −9.386 kcal/mol (4EY7), −8.180 kcal/mol (1 ZGC), and −6.301 kcal/mol (3ZG5), respectively. This is the first report integrating AChE inhibition, anticancer, antibacterial, and antibiofilm evaluations of novel benzimidazolium derivatives in combination with molecular docking, thereby providing a multi-targeted framework for the development of new therapeutic agents against neurodegenerative diseases, cancer, and multidrug-resistant infections.</div></div>","PeriodicalId":8174,"journal":{"name":"Archives of biochemistry and biophysics","volume":"774 ","pages":"Article 110630"},"PeriodicalIF":3.0,"publicationDate":"2025-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145228434","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LncRNA SNHG15 facilitates the advancement of preeclampsia via the miR-451a/ATF2 axis. LncRNA SNHG15通过miR-451a/ATF2轴促进先兆子痫的进展。
IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-01 Epub Date: 2025-08-05 DOI: 10.1016/j.abb.2025.110570
Min Wu, Jing Li, Xiaoqian Fu, Xiujing Lu, Lu Xiao, Yachang Zeng

Preeclampsia (PE) is a pregnancy complication that poses a major risk to both the maternal and the fetal's safety. By studying the role and mechanism of LncRNA SNHG15 in preeclampsia pathogenesis, this study aimed to better understand the pathophysiology and prevention of PE. Placental samples and hypoxic trophoblast cell line--HTR8/SVneo were analyzed using qPCR to determine the differential expression of LncRNA SNHG15. Nuclear-cytoplasmic fractionation assays confirmed that LncRNA SNHG15 is predominantly localized in the cytoplasm of HTR8/SVneo cells, where it modulates cellular functions including proliferation, migration, and invasion. Using a dual luciferase reporter assay and rescue experiment, functions of miRNA-451a and LncRNA SNHG15 in HTR8/SVneo cells were examined. ATF2 expression levels in the hypoxic cell model and after LncRNA SNHG15 and miR-451a interference were confirmed by qPCR and Western blot. Evidence from this study indicates that LncRNA SNHG15 may be involved in the onset of preeclampsia, suggesting its viability as a novel treatment target.

先兆子痫(PE)是一种妊娠并发症,对母体和胎儿的安全构成重大风险。本研究通过研究LncRNA SNHG15在子痫前期发病中的作用及机制,旨在更好地了解PE的病理生理及预防。采用qPCR分析胎盘样品和缺氧滋养细胞系HTR8/SVneo,确定LncRNA SNHG15的差异表达。核细胞质分离实验证实,LncRNA SNHG15主要定位于HTR8/SVneo细胞的细胞质中,在那里它调节细胞功能,包括增殖、迁移和侵袭。采用双荧光素酶报告基因实验和拯救实验,检测miRNA-451a和LncRNA SNHG15在HTR8/SVneo细胞中的功能。通过qPCR和Western blot验证ATF2在缺氧细胞模型和LncRNA SNHG15和miR-451a干扰后的表达水平。本研究证据提示LncRNA SNHG15可能参与子痫前期的发病,提示其作为一种新的治疗靶点的可行性。
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引用次数: 0
Galectin-8 binding to alpha-1 antitrypsin is a physiological mechanism in healthy individuals but exacerbates the symptoms of alpha-1 antitrypsin deficiency. 在健康个体中,半乳糖凝集素-8与α -1抗胰蛋白酶结合是一种生理机制,但会加剧α -1抗胰蛋白酶缺乏的症状。
IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-01 Epub Date: 2025-08-06 DOI: 10.1016/j.abb.2025.110577
Hend Sayed, Kevin H Mayo, Yifa Zhou, Guihua Tai, Jiyong Su

Alpha-1 Antitrypsin (AAT) is a serine protease inhibitor that protects lung tissue by neutralizing neutrophil elastase. Galectin-8 (Gal-8) is a tandem-repeat galectin with N- and C-terminal carbohydrate recognition domains (CRDs) that bind β-galactoside-containing N-glycans. Both proteins co-localize in pulmonary and circulatory systems, suggesting a physiological interaction. Here, we demonstrate a glycan-dependent binding between Gal-8 and AAT using pull-down assays, mass spectrometry, isothermal titration calorimetry, and size-exclusion chromatography. Importantly, binding of Gal-8 impairs AAT's protease inhibitory activity, with the N-terminal CRD of Gal-8 sufficient to disrupt AAT function. Kinetic analyses show that Gal-8 inhibits AAT and enhances trypsin activity, as evidenced by a decrease in Km and an increase in catalytic efficiency (kcat/Km). In cell assays, Gal-8 restored trypsin-mediated proteolysis and induced cell detachment in HeLa and CHO cells despite AAT presence, confirming biological relevance. Leveraging this interaction, we developed a lactose-mediated elution method to purify AAT from human and bovine serum using Gal-8 immobilized on Ni-NTA beads. Moreover, a stable CHO cell line expressing recombinant AAT (∼2 g/L) exhibited glycosylation comparable to serum AAT and retained Gal-8 binding. Our findings reveal Gal-8 as a novel modulator of AAT activity and present a glycan-specific strategy for AAT purification, with implications for biotherapeutic production and quality control.

α -1抗胰蛋白酶(AAT)是一种丝氨酸蛋白酶抑制剂,通过中和中性粒细胞弹性酶来保护肺组织。半乳糖凝集素-8 (Gal-8)是一种串联重复的凝集素,具有N端和c端碳水化合物识别结构域(CRDs),结合含有β-半乳糖苷的N-聚糖。这两种蛋白在肺和循环系统中共同定位,表明存在生理上的相互作用。在这里,我们通过下拉分析、质谱分析、等温滴定量热法和尺寸排除色谱法证明了Gal-8和AAT之间的甘聚糖依赖性结合。重要的是,Gal-8的结合会损害AAT的蛋白酶抑制活性,Gal-8的n端CRD足以破坏AAT的功能。动力学分析表明,Gal-8通过降低Km和提高催化效率(kcat/Km)来增强胰蛋白酶活性,与AAT抑制作用一致。在细胞实验中,尽管存在AAT, Gal-8仍能恢复胰蛋白酶介导的蛋白水解并诱导HeLa和CHO细胞脱离,证实了生物学相关性。利用这种相互作用,我们开发了一种乳糖介导的洗脱方法,利用固定在Ni-NTA珠上的Gal-8从人和牛血清中纯化AAT。此外,表达重组AAT (~ 2 g/L)的稳定CHO细胞系表现出与血清AAT相当的糖基化,并保留了Gal-8结合。我们的研究结果揭示了Gal-8是AAT活性的一种新型调节剂,并提出了AAT纯化的甘聚糖特异性策略,这对生物治疗生产和质量控制具有重要意义。
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引用次数: 0
TNF promotes osteoclastogenesis by secreting miR-31-5p into small extracellular vesicles via the autotaxin–LPA–LPAR1 axis in arthritic fibroblast-like synoviocytes TNF通过关节炎成纤维细胞样滑膜细胞的autotaxin-LPA-LPAR1轴将miR-31-5p分泌到细胞外小泡中,从而促进破骨细胞的发生
IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-01 DOI: 10.1016/j.abb.2025.110631
Thanh Nam Phan , Minju Gal , Okhwa Kim , Hoang Long Le , Cheol Hwangbo , Jeong-Hyung Lee
Fibroblast-like synoviocytes (FLSs) play a crucial role in the pathogenesis of arthritis. However, the impact of small extracellular vesicles (sEVs) secreted by FLSs on osteoclastogenesis remains incompletely understood. In this study, we aimed to investigate the role of tumor necrosis factor (TNF)- and lysophosphatidic acid (LPA)-activated FLSs in sEV-mediated release of osteoclastogenic miRNAs and elucidate their functional contribution to osteoclastogenesis. Stimulation of SW982 cells with LPA or TNF significantly increased sEV secretion. TNF upregulated autotaxin expression and promoted sEV release; however, small interfering RNA (siRNA)-mediated knockdown (KD) of LPAR1 attenuated the increase in sEV release induced by the TNF–autotaxin–LPA axis. Notably, stimulation with TNF or LPA elevated syntenin-1 expression without altering its mRNA level. Furthermore, KD of the syntenin-1 gene (SDCBP) suppressed the LPA-induced increase in sEV release, indicating that syntenin-1 may mediate sEV secretion induced by the TNF–autotaxin–LPA–LPAR1 axis. sEVs derived from TNF- or LPA-treated SW982 cells stimulated osteoclastogenesis. We identified miR-31-5p as an osteoclastogenic miRNA enriched in sEVs. Expression levels of miR-31-5p in sEVs from TNF- and LPA-stimulated rheumatoid arthritis (RA) FLSs were significantly higher than in those from unstimulated RA FLSs. Treatment with a miR-31-5p mimic enhanced osteoclastogenesis by targeting large tumor suppressor kinase 2 (LATS2), whereas treatment with its inhibitor suppressed the sEV-mediated promotion of osteoclastogenesis. These findings reveal a mechanism by which TNF- and LPA-activated FLSs may facilitate sEV-mediated delivery of osteoclastogenic miRNAs, such as miR-31-5p, to osteoclast precursors, thereby contributing to osteoclast formation and bone destruction.
成纤维细胞样滑膜细胞(FLSs)在关节炎的发病机制中起着至关重要的作用。然而,FLSs分泌的小细胞外囊泡(sev)对破骨细胞发生的影响仍不完全清楚。在这项研究中,我们旨在研究肿瘤坏死因子(TNF)-和溶血磷脂酸(LPA)-激活的FLSs在sev介导的破骨microrna释放中的作用,并阐明它们在破骨细胞发生中的功能贡献。LPA或TNF刺激SW982细胞可显著增加sEV分泌。TNF上调autotaxin表达,促进sEV释放;然而,小干扰RNA (siRNA)介导的LPAR1敲低(KD)减弱了TNF-autotaxin-LPA轴诱导的sEV释放的增加。值得注意的是,TNF或LPA刺激可提高syntenin-1的表达,但不改变其mRNA水平。此外,syntenin-1基因(SDCBP)的KD抑制了lpa诱导的sEV释放增加,表明syntenin-1可能介导了TNF-autotaxin-LPA-LPAR1轴诱导的sEV分泌。来自TNF-或lpa处理的SW982细胞的sev刺激了破骨细胞的发生。我们发现miR-31-5p是在sev中富集的破骨细胞microrna。TNF-和lpa刺激的类风湿关节炎(RA) FLSs的sev中miR-31-5p的表达水平显著高于未刺激的类风湿关节炎FLSs。miR-31-5p模拟物通过靶向大肿瘤抑制激酶2 (LATS2)增强破骨细胞的生成,而其抑制剂抑制sev介导的破骨细胞生成。这些发现揭示了TNF-和lpa激活的FLSs可能促进sev介导的破骨细胞microrna(如miR-31-5p)递送到破骨细胞前体的机制,从而促进破骨细胞的形成和骨破坏。
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引用次数: 0
β-Galactosidase inhibition explored by biochemical methods and in silico studies for plant polyphenols. 植物多酚类物质对β-半乳糖苷酶抑制作用的生物化学方法和硅片研究。
IF 3 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-01 Epub Date: 2025-07-25 DOI: 10.1016/j.abb.2025.110568
Ahmed Zayed, Karima Sayah, Kalicharan Sharma, Rasha Ali Radwan, Shahira M Ezzat

β-Galactosidase is a lysosomal enzyme whose deficiency is associated with genetic disorders such as GM1 gangliosidosis, prompting the search for novel enzyme modulators with therapeutic potential. The current study evaluated the inhibitory potential of selected natural polyphenols against β-galactosidase using a combined approach of biochemical assays and computational modeling. Sixteen plant-derived compounds were initially screened through molecular docking against Aspergillus oryzae β-galactosidase. Among these, hesperidin, rutin, and chlorogenic acid exhibited the most favorable interactions and were subsequently assessed through in vitro enzyme inhibition assays and MM/GBSA binding energy calculations. These compounds showed potential inhibitory effects and stable binding within the enzyme's active site. Although classical pharmacological chaperone activity was not directly demonstrated, the observed modulation of enzyme function suggests potential for further development of these polyphenols as structurally distinct β-galactosidase inhibitors. The findings provide a basis for future investigations aimed at natural product-based strategies to manage lysosomal storage disorders such as GM1 gangliosidosis.

β-半乳糖苷酶是一种溶酶体酶,其缺乏与遗传疾病如GM1神经节脂质病有关,这促使人们寻找具有治疗潜力的新型酶调节剂。目前的研究评估了选择的天然多酚对β-半乳糖苷酶的抑制潜力,采用生化测定和计算模型相结合的方法。通过对米曲霉β-半乳糖苷酶分子对接,初步筛选出16个植物源化合物。其中橙皮苷、芦丁和绿原酸表现出最有利的相互作用,随后通过体外酶抑制实验和MM/GBSA结合能计算进行评估。这些化合物显示出潜在的抑制作用,并在酶的活性位点内稳定结合。虽然经典的药理学伴侣活性没有直接证明,但观察到的酶功能调节表明,这些多酚有可能进一步发展为结构独特的糖苷酶抑制剂。这些发现为未来的研究提供了基础,旨在以天然产物为基础的策略来管理溶酶体储存疾病,如GM1神经节脂质沉积症。
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引用次数: 0
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Archives of biochemistry and biophysics
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