Pub Date : 2024-09-28DOI: 10.1177/00037028241280669
Jordan M J Peper, John H Kalivas
Modern developments in autonomous chemometric machine learning technology strive to relinquish the need for human intervention. However, such algorithms developed and used in chemometric multivariate calibration and classification applications exclude crucial expert insight when difficult and safety-critical analysis situations arise, e.g., spectral-based medical decisions such as noninvasively determining if a biopsy is cancerous. The prediction accuracy and interpolation capabilities of autonomous methods for new samples depend on the quality and scope of their training (calibration) data. Specifically, analysis patterns within target data not captured by the training data will produce undesirable outcomes. Alternatively, using an immersive analytic approach allows insertion of human expert judgment at key machine learning algorithm junctures forming a sensemaking process performed in cooperation with a computer. The capacity of immersive virtual reality (IVR) environments to render human comprehensible three-dimensional space simulating real-world encounters, suggests its suitability as a hybrid immersive human-computer interface for data analysis tasks. Using IVR maximizes human senses to capitalize on our instinctual perception of the physical environment, thereby leveraging our innate ability to recognize patterns and visualize thresholds crucial to reducing erroneous outcomes. In this first use of IVR as an immersive analytic tool for spectral data, we examine an integrated IVR real-time model selection algorithm for a recent model updating method that adapts a model from the original calibration domain to predict samples from shifted target domains. Using near-infrared data, analyte prediction errors from IVR-selected models are reduced compared to errors using an established autonomous model selection approach. Results demonstrate the viability of IVR as a human data analysis interface for spectral data analysis including classification problems.
{"title":"Redefining Spectral Data Analysis with Immersive Analytics: Exploring Domain-Shifted Model Spaces for Optimal Model Selection.","authors":"Jordan M J Peper, John H Kalivas","doi":"10.1177/00037028241280669","DOIUrl":"https://doi.org/10.1177/00037028241280669","url":null,"abstract":"<p><p>Modern developments in autonomous chemometric machine learning technology strive to relinquish the need for human intervention. However, such algorithms developed and used in chemometric multivariate calibration and classification applications exclude crucial expert insight when difficult and safety-critical analysis situations arise, e.g., spectral-based medical decisions such as noninvasively determining if a biopsy is cancerous. The prediction accuracy and interpolation capabilities of autonomous methods for new samples depend on the quality and scope of their training (calibration) data. Specifically, analysis patterns within target data not captured by the training data will produce undesirable outcomes. Alternatively, using an immersive analytic approach allows insertion of human expert judgment at key machine learning algorithm junctures forming a sensemaking process performed in cooperation with a computer. The capacity of immersive virtual reality (IVR) environments to render human comprehensible three-dimensional space simulating real-world encounters, suggests its suitability as a hybrid immersive human-computer interface for data analysis tasks. Using IVR maximizes human senses to capitalize on our instinctual perception of the physical environment, thereby leveraging our innate ability to recognize patterns and visualize thresholds crucial to reducing erroneous outcomes. In this first use of IVR as an immersive analytic tool for spectral data, we examine an integrated IVR real-time model selection algorithm for a recent model updating method that adapts a model from the original calibration domain to predict samples from shifted target domains. Using near-infrared data, analyte prediction errors from IVR-selected models are reduced compared to errors using an established autonomous model selection approach. Results demonstrate the viability of IVR as a human data analysis interface for spectral data analysis including classification problems.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241280669"},"PeriodicalIF":2.2,"publicationDate":"2024-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142340056","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-26DOI: 10.1177/00037028241280722
Sergei V Bykov, Sanford A Asher
A combination of a highly efficient 213 nm Rayleigh rejection filter (RRF) and a miniaturized 213 nm neodymium-doped vanadate laser enables portable deep ultraviolet (UV) Raman spectrometers. We demonstrate the high efficiency of 213 nm RRF manufactured by Green Optics Co., Ltd by utilizing our compact 213 nm vanadate laser to measure high signal-to-noise ratio UV Raman spectra of Teflon and UV resonance Raman (UVRR) spectra of solid ammonium nitrate. We also demonstrate UVRR detection of trace amounts of ammonia formed during ammonium nitrate UV photolysis. We roughly estimate the ammonia UVRR detection limit of ∼10 ng under our experimental conditions.
{"title":"Solid State Vanadate Laser and 213 nm Rayleigh Rejection Filter Enable Miniaturized Deep Ultraviolet Raman Spectrometers.","authors":"Sergei V Bykov, Sanford A Asher","doi":"10.1177/00037028241280722","DOIUrl":"https://doi.org/10.1177/00037028241280722","url":null,"abstract":"<p><p>A combination of a highly efficient 213 nm Rayleigh rejection filter (RRF) and a miniaturized 213 nm neodymium-doped vanadate laser enables portable deep ultraviolet (UV) Raman spectrometers. We demonstrate the high efficiency of 213 nm RRF manufactured by Green Optics Co., Ltd by utilizing our compact 213 nm vanadate laser to measure high signal-to-noise ratio UV Raman spectra of Teflon and UV resonance Raman (UVRR) spectra of solid ammonium nitrate. We also demonstrate UVRR detection of trace amounts of ammonia formed during ammonium nitrate UV photolysis. We roughly estimate the ammonia UVRR detection limit of ∼10 ng under our experimental conditions.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241280722"},"PeriodicalIF":2.2,"publicationDate":"2024-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142340057","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-24DOI: 10.1177/00037028241279323
Andreia E Gomes, Sérgio M C Nascimento, João M M Linhares
The perceived color of human skin is the result of the interaction of environmental lighting with the skin. Only by resorting to human skin spectral reflectance, it is possible to obtain physical outcomes of this interaction. The purpose of this work was to provide a cured and validated database of hyperspectral images of human faces, useful for several applications, such as psychophysics-based research, object recognition, and material modeling. The hyperspectral imaging data from 29 human faces with different skin tones and sexes, under constant lighting and controlled movements, were described and characterized. Each hyperspectral image, which comprised spectral reflectance of the whole face from 400 to 720 nm in 10 nm steps at each pixel, was analyzed between and within nine facial positions located at different areas of the face. Simultaneously, spectral measurements at the same nine facial positions using conventional local point and/or contact devices were used to ascertain the data. It was found that the spectral reflectance profile changed between skin tones, subjects, and facial locations. Important local variations of the spectral reflectance profile showed that extra care is needed when considering average values from conventional devices at the same area of measurement.
{"title":"Hyperspectral Imaging Database of Human Facial Skin.","authors":"Andreia E Gomes, Sérgio M C Nascimento, João M M Linhares","doi":"10.1177/00037028241279323","DOIUrl":"https://doi.org/10.1177/00037028241279323","url":null,"abstract":"<p><p>The perceived color of human skin is the result of the interaction of environmental lighting with the skin. Only by resorting to human skin spectral reflectance, it is possible to obtain physical outcomes of this interaction. The purpose of this work was to provide a cured and validated database of hyperspectral images of human faces, useful for several applications, such as psychophysics-based research, object recognition, and material modeling. The hyperspectral imaging data from 29 human faces with different skin tones and sexes, under constant lighting and controlled movements, were described and characterized. Each hyperspectral image, which comprised spectral reflectance of the whole face from 400 to 720 nm in 10 nm steps at each pixel, was analyzed between and within nine facial positions located at different areas of the face. Simultaneously, spectral measurements at the same nine facial positions using conventional local point and/or contact devices were used to ascertain the data. It was found that the spectral reflectance profile changed between skin tones, subjects, and facial locations. Important local variations of the spectral reflectance profile showed that extra care is needed when considering average values from conventional devices at the same area of measurement.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241279323"},"PeriodicalIF":2.2,"publicationDate":"2024-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142307041","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-23DOI: 10.1177/00037028241279328
Yanru Li, Keming Yang, Bing Wu
This study aims to identify different types of stress on maize leaves using feature selection and spectral index methods. Spectral data were collected from leaves under heavy metal, water, fertilizer stress, as well as under normal healthy conditions. Preprocessing steps such as continuum removal (CR), standard normal variable (SNV) transformation, multiple scattering correction (MSC), detrend correction (DT), and first-order derivative (FOD) were applied to the raw spectra. Various feature selection methods including ReliefF, chi-square test, recursive feature elimination (FRE), mutual information (MI), random forest (RF), and gradient boosting tree (GBT) were employed to determine the importance scores of different spectral bands, thus identifying sensitive spectral features capable of distinguishing various stress types. Spectral indices for stress type differentiation were constructed using label correlation method. Classification models were built using support vector machine (SVM), K-nearest neighbors (KNN), Gaussian naive Bayes (GNB), extreme gradient boosting (XGBoost), RF, and adaptive boosting (AdaBoost) algorithms. Results indicate that the characteristic spectral bands for differentiating stress types are primarily distributed around the red edge (near 700-800 nm) and water absorption valley (near 1900 nm). Spectral indices constructed using combinations of spectral bands around the near-infrared plateau absorption valley (near 1185 nm) and water absorption valley (near 1460 nm) effectively differentiate maize stress types. Among the modeling classification algorithms, RF and AdaBoost algorithms exhibited optimal performance, demonstrating high classification accuracy on both training and validation sets. These findings hold promise for providing new technical support for maize stress monitoring and diagnosis in agricultural production.
{"title":"Feature Selection and Spectral Indices for Identifying Maize Stress Types.","authors":"Yanru Li, Keming Yang, Bing Wu","doi":"10.1177/00037028241279328","DOIUrl":"https://doi.org/10.1177/00037028241279328","url":null,"abstract":"<p><p>This study aims to identify different types of stress on maize leaves using feature selection and spectral index methods. Spectral data were collected from leaves under heavy metal, water, fertilizer stress, as well as under normal healthy conditions. Preprocessing steps such as continuum removal (CR), standard normal variable (SNV) transformation, multiple scattering correction (MSC), detrend correction (DT), and first-order derivative (FOD) were applied to the raw spectra. Various feature selection methods including ReliefF, chi-square test, recursive feature elimination (FRE), mutual information (MI), random forest (RF), and gradient boosting tree (GBT) were employed to determine the importance scores of different spectral bands, thus identifying sensitive spectral features capable of distinguishing various stress types. Spectral indices for stress type differentiation were constructed using label correlation method. Classification models were built using support vector machine (SVM), K-nearest neighbors (KNN), Gaussian naive Bayes (GNB), extreme gradient boosting (XGBoost), RF, and adaptive boosting (AdaBoost) algorithms. Results indicate that the characteristic spectral bands for differentiating stress types are primarily distributed around the red edge (near 700-800 nm) and water absorption valley (near 1900 nm). Spectral indices constructed using combinations of spectral bands around the near-infrared plateau absorption valley (near 1185 nm) and water absorption valley (near 1460 nm) effectively differentiate maize stress types. Among the modeling classification algorithms, RF and AdaBoost algorithms exhibited optimal performance, demonstrating high classification accuracy on both training and validation sets. These findings hold promise for providing new technical support for maize stress monitoring and diagnosis in agricultural production.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241279328"},"PeriodicalIF":2.2,"publicationDate":"2024-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142279786","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-18DOI: 10.1177/00037028241279434
Zofia Chajdaś, Martyna Kucharska, Aleksandra Wesełucha-Birczyńska
Cinchonine is a quinoline alkaloid known for its antimalarial properties. Due to the advantages of using compounds of metal ions with alkaloids, a copper(II) compound with cinchonine was synthesized, and, for comparative purposes, a cadmium(II) compound with cinchonine. During the synthesis, the emerging interactions between the metal ion and cinchonine were studied. After crystallization, it was examined how the obtained compounds would interact with the model blood component, hematoporphyrin IX. Ultraviolet–visible (UV–Vis) spectroscopy, Raman spectroscopy, and attenuated total reflection Fourier transform infrared spectroscopy (ATR FT-IR) were used in the study. In the case of monitoring the synthesis, the best method turned out to be UV–Vis spectroscopy, combined with the possibility of two-dimensional correlation spectroscopy (2D-COS), which enabled the identification of peaks characteristic of the interactions of the cinchonine quinoline ring with metal ions. In turn, the obtained Raman spectra showed shifts of individual bands and changes in their intensity, and 2D-COS showed the sequence of formation of individual interactions, which confirmed the formation of cinchonine compounds with metals. ATR FT-IR also allowed us to compare the spectra of the substrates used in the synthesis with the crystallized compounds and thus confirm the formation of the expected compounds. Bands characteristic of π–π-stacking interactions between the quinoline ring and the tetrapyrrole ring of hematoporphyrin IX were also observed. Observed interaction with a model blood component may be important when designing drugs for antimalarial therapy.
金鸡纳树碱是一种喹啉生物碱,以其抗疟特性而闻名。由于使用金属离子与生物碱的化合物具有优势,因此我们合成了一种铜(II)与金鸡宁的化合物,并合成了一种镉(II)与金鸡宁的化合物以作比较。在合成过程中,研究了金属离子与金鸡纳树碱之间新出现的相互作用。结晶后,研究了所获化合物如何与血液成分模型--血卟啉 IX 发生相互作用。研究中使用了紫外-可见(UV-Vis)光谱、拉曼光谱和衰减全反射傅立叶变换红外光谱(ATR FT-IR)。在监测合成过程方面,最佳方法是紫外可见光谱法,该方法结合了二维相关光谱法(2D-COS),能够识别金鸡纳喹啉环与金属离子相互作用的特征峰。反过来,所获得的拉曼光谱显示了单个波段的移动及其强度的变化,而二维相关光谱则显示了单个相互作用的形成顺序,这证实了金鸡纳类化合物与金属的形成。通过 ATR 傅立叶变换红外光谱,我们还可以比较合成中使用的底物与结晶化合物的光谱,从而确认预期化合物的形成。我们还观察到了血卟啉 IX 的喹啉环和四吡咯环之间的 π-π-stacking 相互作用的特征带。观察到的与模型血液成分的相互作用可能对设计抗疟治疗药物非常重要。
{"title":"Two-Dimensional Correlation Spectroscopy (2D-COS) Tracking of the Formation of Selected Transition Metal Compounds Cu(II) and Cd(II) With Cinchonine and Their Impact on Model Components of Erythrocytes","authors":"Zofia Chajdaś, Martyna Kucharska, Aleksandra Wesełucha-Birczyńska","doi":"10.1177/00037028241279434","DOIUrl":"https://doi.org/10.1177/00037028241279434","url":null,"abstract":"Cinchonine is a quinoline alkaloid known for its antimalarial properties. Due to the advantages of using compounds of metal ions with alkaloids, a copper(II) compound with cinchonine was synthesized, and, for comparative purposes, a cadmium(II) compound with cinchonine. During the synthesis, the emerging interactions between the metal ion and cinchonine were studied. After crystallization, it was examined how the obtained compounds would interact with the model blood component, hematoporphyrin IX. Ultraviolet–visible (UV–Vis) spectroscopy, Raman spectroscopy, and attenuated total reflection Fourier transform infrared spectroscopy (ATR FT-IR) were used in the study. In the case of monitoring the synthesis, the best method turned out to be UV–Vis spectroscopy, combined with the possibility of two-dimensional correlation spectroscopy (2D-COS), which enabled the identification of peaks characteristic of the interactions of the cinchonine quinoline ring with metal ions. In turn, the obtained Raman spectra showed shifts of individual bands and changes in their intensity, and 2D-COS showed the sequence of formation of individual interactions, which confirmed the formation of cinchonine compounds with metals. ATR FT-IR also allowed us to compare the spectra of the substrates used in the synthesis with the crystallized compounds and thus confirm the formation of the expected compounds. Bands characteristic of π–π-stacking interactions between the quinoline ring and the tetrapyrrole ring of hematoporphyrin IX were also observed. Observed interaction with a model blood component may be important when designing drugs for antimalarial therapy.","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":"95 1","pages":"37028241279434"},"PeriodicalIF":3.5,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142263028","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-10DOI: 10.1177/00037028241276013
Qingbo Li, Shufan Chen
The miniature fiber Raman spectroscopy detection technology can reflect the properties of biomolecules through spectral characteristics and has the advantages of noninvasiveness, real-time, safety, label-free operation, and potential for early cancer diagnosis. This technology holds promise for developing portable, low-cost, intraoperative tumor detection instruments. Glioma is one of the most common malignant tumors of the central nervous system with rapid growth and a short disease course. However, the considerable heterogeneity of the glioma sample leads to substantial intraclass variance in collected spectra, coupled with the miniature Raman spectrometer's low signal-to-noise ratio. These factors diminish the accuracy of the brain glioma recognition model. To address this issue, a glioma identification method based on digital multimodal spectra integrated with deep learning features fusion (DMS-DLFF) using the miniature Raman spectrometer is proposed. Different from existing multimodal tumor detection methods employing multiple spectral instruments, DMS-DLFF enhances tumor identification accuracy without increasing hardware costs. The method mathematically decomposes the original spectra to Raman and fluorescence spectra, so as to augment the biospectral information. Then, the deep learning method is used to extract the feature information of the two kinds of spectra, respectively, and the digital multimodal spectral fusion is realized at the feature level. Moreover, a two-layer pattern recognition model is constructed based on the ensemble strategy, amalgamating the strengths of diverse classifiers. Meanwhile, the bagging strategy is introduced to improve support vector machine algorithms, one of the basic classifiers. Compared with traditional methodologies, DMS-DLFF operates at both the feature level and decision level, employing high-information-density feature vectors to train ensemble classification models for increasing overall recognition accuracy. This study collected 260 Raman spectra of glioma and 151 Raman spectra of normal brain tissue. The accuracy, sensitivity, and specificity were 91.9%, 96.7%, and 80.8%, respectively. The proposed method outperforms traditional algorithms in brain glioma detection, which helps doctors formulate precise surgical plans and thereby improve patient prognosis.
{"title":"Glioma Identification Based on Digital Multimodal Spectra Integrated With Deep Learning Feature Fusion Using a Miniature Raman Spectrometer","authors":"Qingbo Li, Shufan Chen","doi":"10.1177/00037028241276013","DOIUrl":"https://doi.org/10.1177/00037028241276013","url":null,"abstract":"The miniature fiber Raman spectroscopy detection technology can reflect the properties of biomolecules through spectral characteristics and has the advantages of noninvasiveness, real-time, safety, label-free operation, and potential for early cancer diagnosis. This technology holds promise for developing portable, low-cost, intraoperative tumor detection instruments. Glioma is one of the most common malignant tumors of the central nervous system with rapid growth and a short disease course. However, the considerable heterogeneity of the glioma sample leads to substantial intraclass variance in collected spectra, coupled with the miniature Raman spectrometer's low signal-to-noise ratio. These factors diminish the accuracy of the brain glioma recognition model. To address this issue, a glioma identification method based on digital multimodal spectra integrated with deep learning features fusion (DMS-DLFF) using the miniature Raman spectrometer is proposed. Different from existing multimodal tumor detection methods employing multiple spectral instruments, DMS-DLFF enhances tumor identification accuracy without increasing hardware costs. The method mathematically decomposes the original spectra to Raman and fluorescence spectra, so as to augment the biospectral information. Then, the deep learning method is used to extract the feature information of the two kinds of spectra, respectively, and the digital multimodal spectral fusion is realized at the feature level. Moreover, a two-layer pattern recognition model is constructed based on the ensemble strategy, amalgamating the strengths of diverse classifiers. Meanwhile, the bagging strategy is introduced to improve support vector machine algorithms, one of the basic classifiers. Compared with traditional methodologies, DMS-DLFF operates at both the feature level and decision level, employing high-information-density feature vectors to train ensemble classification models for increasing overall recognition accuracy. This study collected 260 Raman spectra of glioma and 151 Raman spectra of normal brain tissue. The accuracy, sensitivity, and specificity were 91.9%, 96.7%, and 80.8%, respectively. The proposed method outperforms traditional algorithms in brain glioma detection, which helps doctors formulate precise surgical plans and thereby improve patient prognosis.","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":"1 1","pages":"37028241276013"},"PeriodicalIF":3.5,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142214319","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-05DOI: 10.1177/00037028241275107
Wolfram Rudolph
Polarized Raman spectroscopy was used to analyze aqueous solutions of sodium orthophosphate and orthovanadate over a wide concentration range (0.00891-0.702 mol/L) at 23 °C. The isotropic scattering profiles were obtained by measuring polarized Raman scattering spectra. Furthermore, R-normalized spectra were calculated and presented. The tetrahedral ions, VO43-(aq) and PO43-(aq), demand four Raman active bands which have been subsequently characterized and assigned. For the PO43-(aq) ion, the deformation modes ν2(e) and ν4(f2) appear at 415 and 557 cm-1, and these modes are depolarized. In the P-O stretching region, the strongest Raman band appears at 936.5 cm-1, which is totally polarized with a depolarization ratio (ρ-value) of 0.002. The broad and depolarized mode at 1010 cm-1 constitutes the antisymmetric stretching band ν3(f2). The Raman spectrum of VO43- shows two depolarized deformation modes ν2(e) and ν4(f2) at 327 and 345.6 cm-1, which are severely overlapped. These bands are very weak. The strongest band in the Raman spectrum of VO43-(aq) is the symmetric stretching mode ν1(a1) at 820.2 cm-1 which is totally polarized with a ρ-value at 0.004. The depolarized antisymmetric stretching mode ν3(f2) appeared at 785 cm-1 as a broad and weak band. Both anions are strongly hydrated and showed extensive hydrolysis in an aqueous solution. Orthovanadate is a much stronger base than orthophosphate in aqueous solution. Therefore, a large amount of NaOH was used to suppress the hydrolysis of VO43-(aq) sufficiently, so, it was possible to characterize the VO43- modes. Quantitative Raman spectroscopy was applied to follow the hydrolysis of PO43- over a wide concentration range from 0.00891 to 0.592 mol/L. The hydrolysis data allowed the calculation of the pKa3 value for H3PO4 to be 12.330 ± 0.02 (25 °C). The hydrolysis of the VO43- ion is ∼21 times larger than that of the PO43-. The pKa3 value for H3VO4 is estimated to be 13.65 ± 0.1 (25 °C).
{"title":"Characterization of Orthophosphate and Orthovanadate in Aqueous Solution Using Polarized Raman Spectroscopy.","authors":"Wolfram Rudolph","doi":"10.1177/00037028241275107","DOIUrl":"https://doi.org/10.1177/00037028241275107","url":null,"abstract":"<p><p>Polarized Raman spectroscopy was used to analyze aqueous solutions of sodium orthophosphate and orthovanadate over a wide concentration range (0.00891-0.702 mol/L) at 23 °C. The isotropic scattering profiles were obtained by measuring polarized Raman scattering spectra. Furthermore, R-normalized spectra were calculated and presented. The tetrahedral ions, VO<sub>4</sub><sup>3-</sup>(aq) and PO<sub>4</sub><sup>3-</sup>(aq), demand four Raman active bands which have been subsequently characterized and assigned. For the PO<sub>4</sub><sup>3-</sup>(aq) ion, the deformation modes ν<sub>2</sub>(e) and ν<sub>4</sub>(f<sub>2</sub>) appear at 415 and 557 cm<sup>-1</sup>, and these modes are depolarized. In the P-O stretching region, the strongest Raman band appears at 936.5 cm<sup>-1</sup>, which is totally polarized with a depolarization ratio (ρ-value) of 0.002. The broad and depolarized mode at 1010 cm<sup>-1</sup> constitutes the antisymmetric stretching band ν<sub>3</sub>(f<sub>2</sub>). The Raman spectrum of VO<sub>4</sub><sup>3-</sup> shows two depolarized deformation modes ν<sub>2</sub>(e) and ν<sub>4</sub>(f<sub>2</sub>) at 327 and 345.6 cm<sup>-1</sup>, which are severely overlapped. These bands are very weak. The strongest band in the Raman spectrum of VO<sub>4</sub><sup>3-</sup>(aq) is the symmetric stretching mode ν<sub>1</sub>(a<sub>1</sub>) at 820.2 cm<sup>-1</sup> which is totally polarized with a ρ-value at 0.004. The depolarized antisymmetric stretching mode ν<sub>3</sub>(f<sub>2</sub>) appeared at 785 cm<sup>-1</sup> as a broad and weak band. Both anions are strongly hydrated and showed extensive hydrolysis in an aqueous solution. Orthovanadate is a much stronger base than orthophosphate in aqueous solution. Therefore, a large amount of NaOH was used to suppress the hydrolysis of VO<sub>4</sub><sup>3-</sup>(aq) sufficiently, so, it was possible to characterize the VO<sub>4</sub><sup>3-</sup> modes. Quantitative Raman spectroscopy was applied to follow the hydrolysis of PO<sub>4</sub><sup>3-</sup> over a wide concentration range from 0.00891 to 0.592 mol/L. The hydrolysis data allowed the calculation of the p<i>K</i><sub>a3</sub> value for H<sub>3</sub>PO<sub>4</sub> to be 12.330 ± 0.02 (25 °C). The hydrolysis of the VO<sub>4</sub><sup>3-</sup> ion is ∼21 times larger than that of the PO<sub>4</sub><sup>3-</sup>. The p<i>K</i><sub>a3</sub> value for H<sub>3</sub>VO<sub>4</sub> is estimated to be 13.65 ± 0.1 (25 °C).</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241275107"},"PeriodicalIF":2.2,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142139139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-05DOI: 10.1177/00037028241272257
Hideyuki Shinzawa, Azusa Togo, Hideaki Hagihara
In this study, a new system was developed to carry out simultaneous near-infrared (NIR) and small-angle X-ray scattering (SAXS) measurements. Aged polypropylene (PP) was examined with the NIR-SAXS system to demonstrate how it can be utilized to derive pertinent information about the polymer structure. Pairs of SAXS profiles and NIR spectra of PP in its initial state and after aging were measured to derive an in-depth understanding of the aging phenomenon. The SAXS profiles of the PP samples showed a clear shift of the SAXS peak to the lower q direction induced by the thermal aging, indicating an increase in the length of the long-period structure. Two-trace two-dimensional (2T2D) asynchronous correlation spectra derived from NIR spectra clearly revealed that the aging treatment leads to a substantial increase in the spectral intensity of the regularity bands representing the longer helix present in a folded lamellar structure. In other words, it suggests that the long helix structure is more abundantly present than the short helix structure in the aged PP than in the initial PP. By combining the information derived from the SAXS profiles and NIR spectra, the details of the aging-induced variation were clearly determined. Namely, aging causes additional crystallization of the PP by developing more helical structures, which involves an increase in the lamellar thickness as well as a decrease in the amorphous region. The growth of the rigid crystalline phase restricts the elastic deformation in the amorphous structure, which eventually induces the deterioration of PP by making the polymer hard but brittle. Such observation, in turn, implies that retarding or accelerating the crystallized structure of PP substantially works to control the progress of aging.
{"title":"Simultaneous Measurement of Two-Trace Two-Dimensional (2T2D) Near-Infrared (NIR) Asynchronous Correlation Spectra and Small-Angle X-ray Scattering (SAXS) to Characterize Thermally Aged Polypropylene (PP).","authors":"Hideyuki Shinzawa, Azusa Togo, Hideaki Hagihara","doi":"10.1177/00037028241272257","DOIUrl":"10.1177/00037028241272257","url":null,"abstract":"<p><p>In this study, a new system was developed to carry out simultaneous near-infrared (NIR) and small-angle X-ray scattering (SAXS) measurements. Aged polypropylene (PP) was examined with the NIR-SAXS system to demonstrate how it can be utilized to derive pertinent information about the polymer structure. Pairs of SAXS profiles and NIR spectra of PP in its initial state and after aging were measured to derive an in-depth understanding of the aging phenomenon. The SAXS profiles of the PP samples showed a clear shift of the SAXS peak to the lower q direction induced by the thermal aging, indicating an increase in the length of the long-period structure. Two-trace two-dimensional (2T2D) asynchronous correlation spectra derived from NIR spectra clearly revealed that the aging treatment leads to a substantial increase in the spectral intensity of the regularity bands representing the longer helix present in a folded lamellar structure. In other words, it suggests that the long helix structure is more abundantly present than the short helix structure in the aged PP than in the initial PP. By combining the information derived from the SAXS profiles and NIR spectra, the details of the aging-induced variation were clearly determined. Namely, aging causes additional crystallization of the PP by developing more helical structures, which involves an increase in the lamellar thickness as well as a decrease in the amorphous region. The growth of the rigid crystalline phase restricts the elastic deformation in the amorphous structure, which eventually induces the deterioration of PP by making the polymer hard but brittle. Such observation, in turn, implies that retarding or accelerating the crystallized structure of PP substantially works to control the progress of aging.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241272257"},"PeriodicalIF":2.2,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141878260","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2023-11-15DOI: 10.1177/00037028231210885
Ryan S Jakubek, Rohit Bhartia, Kyle Uckert, Sanford A Asher, Andrew D Czaja, Marc D Fries, Kevin Hand, Nikole C Haney, Joseph Razzell Hollis, Michelle Minitti, Shiv K Sharma, Sunanda Sharma, Sandra Siljeström
In this work, we derive a simple method for calibrating Raman bandwidths for the Scanning Habitable Environments with Raman and Luminescence for Organics and Chemicals (SHERLOC) instrument onboard NASA's Perseverance rover. Raman bandwidths and shapes reported by an instrument contain contributions from both the intrinsic Raman band (IRB) and instrumental artifacts. To directly correlate bandwidth to sample properties and to compare bandwidths across instruments, the IRB width needs to be separated from instrumental effects. Here, we use the ubiquitous bandwidth calibration method of modeling the observed Raman bands as a convolution of a Lorentzian IRB and a Gaussian instrument slit function. Using calibration target data, we calculate that SHERLOC has a slit function width of 34.1 cm-1. With a measure of the instrument slit function, we can deconvolve the IRB from the observed band, providing the width of the Raman band unobscured by instrumental artifact. We present the correlation between observed Raman bandwidth and intrinsic Raman bandwidth in table form for the quick estimation of SHERLOC Raman intrinsic bandwidths. We discuss the limitations of using this model to calibrate Raman bandwidth and derive a quantitative method for calculating the errors associated with the calibration. We demonstrate the utility of this method of bandwidth calibration by examining the intrinsic bandwidths of SHERLOC sulfate spectra and by modeling the SHERLOC spectrum of olivine.
{"title":"Calibration of Raman Bandwidths on the Scanning Habitable Environments with Raman and Luminescence for Organics and Chemicals (SHERLOC) Deep Ultraviolet Raman and Fluorescence Instrument Aboard the <i>Perseverance</i> Rover.","authors":"Ryan S Jakubek, Rohit Bhartia, Kyle Uckert, Sanford A Asher, Andrew D Czaja, Marc D Fries, Kevin Hand, Nikole C Haney, Joseph Razzell Hollis, Michelle Minitti, Shiv K Sharma, Sunanda Sharma, Sandra Siljeström","doi":"10.1177/00037028231210885","DOIUrl":"10.1177/00037028231210885","url":null,"abstract":"<p><p>In this work, we derive a simple method for calibrating Raman bandwidths for the Scanning Habitable Environments with Raman and Luminescence for Organics and Chemicals (SHERLOC) instrument onboard NASA's <i>Perseverance</i> rover. Raman bandwidths and shapes reported by an instrument contain contributions from both the intrinsic Raman band (IRB) and instrumental artifacts. To directly correlate bandwidth to sample properties and to compare bandwidths across instruments, the IRB width needs to be separated from instrumental effects. Here, we use the ubiquitous bandwidth calibration method of modeling the observed Raman bands as a convolution of a Lorentzian IRB and a Gaussian instrument slit function. Using calibration target data, we calculate that SHERLOC has a slit function width of 34.1 cm<sup>-1</sup>. With a measure of the instrument slit function, we can deconvolve the IRB from the observed band, providing the width of the Raman band unobscured by instrumental artifact. We present the correlation between observed Raman bandwidth and intrinsic Raman bandwidth in table form for the quick estimation of SHERLOC Raman intrinsic bandwidths. We discuss the limitations of using this model to calibrate Raman bandwidth and derive a quantitative method for calculating the errors associated with the calibration. We demonstrate the utility of this method of bandwidth calibration by examining the intrinsic bandwidths of SHERLOC sulfate spectra and by modeling the SHERLOC spectrum of olivine.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"993-1008"},"PeriodicalIF":2.2,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"107590096","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-01Epub Date: 2024-07-25DOI: 10.1177/00037028241258109
Alicja Dabrowska, Andreas Schwaighofer, Bernhard Lendl
Ongoing technological advancements in the field of mid-infrared (MIR) spectroscopy continuously yield novel sensing modalities, offering capabilities beyond traditional techniques like Fourier transform infrared spectroscopy (FT-IR). One such advancement is MIR dispersion spectroscopy, utilizing a tunable quantum cascade laser and Mach-Zehnder interferometer for liquid-phase analysis. Our study assesses the performance of a custom MIR dispersion spectrometer at its current development stage, benchmarks its performance against FT-IR, and validates its potential for time-resolved chemical reaction monitoring. Unlike conventional methods of IR spectroscopy measuring molecular absorptions using intensity attenuation, our method detects refractive index changes (phase shifts) down to a level of 6.1 × 10-7 refractive index units (RIU). This results in 1.5 times better sensitivity with a sevenfold increase in analytical path length, yielding heightened robustness for the analysis of liquids compared to FT-IR. As a case study, we monitor the catalytic activity of invertase with sucrose, observing the formation of resultant monosaccharides and their progression toward thermodynamic equilibrium. Anomalous refractive index spectra of reaction mixtures, with substrate concentrations ranging from 2.5 to 25 g/L, are recorded, and analyzed at various temperatures, yielding Michaelis-Menten kinetics findings comparable to the literature. Additionally, the first-time application of two-dimensional correlation spectroscopy on the recorded dynamic dispersion spectra correctly identifies the mutarotation of reaction products (glucose and fructose). The results demonstrate high precision and sensitivity in investigating complex time-dependent chemical reactions via broadband refractive index changes.
{"title":"Mid-Infrared Dispersion Spectroscopy as a Tool for Monitoring Time-Resolved Chemical Reactions on the Examples of Enzyme Kinetics and Mutarotation of Sugars.","authors":"Alicja Dabrowska, Andreas Schwaighofer, Bernhard Lendl","doi":"10.1177/00037028241258109","DOIUrl":"10.1177/00037028241258109","url":null,"abstract":"<p><p>Ongoing technological advancements in the field of mid-infrared (MIR) spectroscopy continuously yield novel sensing modalities, offering capabilities beyond traditional techniques like Fourier transform infrared spectroscopy (FT-IR). One such advancement is MIR dispersion spectroscopy, utilizing a tunable quantum cascade laser and Mach-Zehnder interferometer for liquid-phase analysis. Our study assesses the performance of a custom MIR dispersion spectrometer at its current development stage, benchmarks its performance against FT-IR, and validates its potential for time-resolved chemical reaction monitoring. Unlike conventional methods of IR spectroscopy measuring molecular absorptions using intensity attenuation, our method detects refractive index changes (phase shifts) down to a level of 6.1 × 10<sup>-7</sup> refractive index units (RIU). This results in 1.5 times better sensitivity with a sevenfold increase in analytical path length, yielding heightened robustness for the analysis of liquids compared to FT-IR. As a case study, we monitor the catalytic activity of invertase with sucrose, observing the formation of resultant monosaccharides and their progression toward thermodynamic equilibrium. Anomalous refractive index spectra of reaction mixtures, with substrate concentrations ranging from 2.5 to 25 g/L, are recorded, and analyzed at various temperatures, yielding Michaelis-Menten kinetics findings comparable to the literature. Additionally, the first-time application of two-dimensional correlation spectroscopy on the recorded dynamic dispersion spectra correctly identifies the mutarotation of reaction products (glucose and fructose). The results demonstrate high precision and sensitivity in investigating complex time-dependent chemical reactions via broadband refractive index changes.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"982-992"},"PeriodicalIF":2.2,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11462787/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141330296","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}