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Prediction of Soil pH in Ash-Enriched Laboratory Columns Using Portable Near-Infrared Spectroscopy: A Comparison of Analytical Strategies. 使用便携式近红外光谱法预测富灰实验室柱中的土壤pH值:分析策略的比较。
IF 2.2 3区 化学 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2026-01-01 Epub Date: 2025-09-24 DOI: 10.1177/00037028251385574
Edouard J Acuña, Francisco J Calderon, Carlos A Bonilla

In the post-fire stage, precipitation and superficial incorporation of ashes alter the chemical properties of the soil. This study evaluated the combined effects of spectral preprocessing methods, data partitioning strategies, and modeling approaches on soil pH prediction using a portable near-infrared (NIR) spectrometer in wildfire ash-enriched soil. A laboratory column experiment was conducted using disturbed sandy loam soil, in which wildfire ashes were incorporated. The experimental design considered five treatments (n = 3) of Eucalyptus globulus and Quillaja saponaria ash incorporations (C: no ash; T1: 2% ash at 2.5  cm; T2: 2% ash at 5  cm; T3: 4% ash at 2.5  cm; T4: 4% ash at 5  cm). After simulating a precipitation of 20  mm h-1 for 6 hours, the soil columns were sampled at 5 depths (D1: 2-3  cm, D2: 7-8  cm, D3: 12-13  cm, D4: 16-17  cm, D5: 20-21  cm). The samples were analyzed using a NIR spectrometer (range: 1350-2550  nm), and the levels of pH (1:2.5) were determined in the laboratory. Eight preprocessing techniques (P0 to P7) were tested, including absorbance conversion, mean centering, trimming, smoothing, standard normal variate (SNV), moving window average (MWA), Savitzky-Golay filtering, and first derivative transformation. Using the Kennard-Stone method, 70% of the data was used for calibration (CAL) and 30% for validation (VAL), considering two partitioning approaches, the same partition by pseudo absorbance values (Scenario A) and different partitions by preprocessing method (Scenario B). Partial least square (PLS) and random forest (RF) models were applied, and performance was assessed using root mean square error (RMSE), coefficient of determination (r2), and ratio of performance to interquartile distance (RPIQ) analyses. The most accurate pH predictions were achieved with RF under Scenario B using trimming + standard normal variate (SNV) + moving weighted average (MWA) preprocessing, yielding r2 values of 0.95 (CAL) and 0.91 (VAL), with RMSEs of 0.23 (CAL) and 0.57 (VAL), and RPIQs of 4.33 (CAL) and 4.61 (VAL). Overall, portable NIR spectroscopy demonstrated strong potential for soil pH prediction in ash-enriched soil, emphasizing the critical role of appropriate spectral preprocessing to avoid overfitting. These findings provide insights into applying portable NIR spectroscopy as a cost-effective tool for monitoring soil pH following wildfires.

在火灾后阶段,沉淀和灰烬的表面掺入改变了土壤的化学性质。本研究评估了光谱预处理方法、数据划分策略和建模方法在野火灰富集土壤中使用便携式近红外光谱仪预测土壤pH值的综合效果。采用扰动砂质壤土,加入野火灰,进行室内柱状试验。试验设计考虑5个处理(n = 3),分别为:C:无灰分;T1: 2.5%灰分;T2: 2%灰分;T3: 2.5%灰分;T4: 4%灰分;模拟20 mm h-1降水6小时后,在5个深度(D1: 2-3 cm, D2: 7-8 cm, D3: 12-13 cm, D4: 16-17 cm, D5: 20-21 cm)取样土壤柱。样品使用近红外光谱仪(范围:1350-2550 nm)进行分析,并在实验室测定pH值(1:25 .5)。测试了8种预处理技术(P0 ~ P7),包括吸光度转换、均值定心、切边、平滑、标准正态变量(SNV)、移动窗口平均(MWA)、Savitzky-Golay滤波和一阶导数变换。采用Kennard-Stone方法,将70%的数据用于校准(CAL), 30%用于验证(VAL),考虑两种划分方法,即采用伪吸光值进行相同的划分(场景A)和采用预处理方法进行不同的划分(场景B)。应用偏最小二乘(PLS)和随机森林(RF)模型,并使用均方根误差(RMSE)、决定系数(r2)和性能与四分位数距离之比(RPIQ)分析对性能进行评估。采用微调+标准正态变量(SNV) +移动加权平均(MWA)预处理的RF在情景B下获得了最准确的pH预测,r2值为0.95 (CAL)和0.91 (VAL), rmse为0.23 (CAL)和0.57 (VAL), RPIQs为4.33 (CAL)和4.61 (VAL)。总体而言,便携式近红外光谱显示出在灰富集土壤中预测土壤pH值的强大潜力,强调了适当的光谱预处理以避免过拟合的关键作用。这些发现为将便携式近红外光谱作为监测野火后土壤pH值的经济有效工具提供了见解。
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引用次数: 0
Surface-Enhanced Raman Spectroscopy Semi-Quantitative Molecular Profiling with a Convolutional Neural Network. 基于卷积神经网络的表面增强拉曼光谱半定量分子分析。
IF 2.2 3区 化学 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2026-01-01 Epub Date: 2025-08-31 DOI: 10.1177/00037028251377474
Alexis Lebrun, Flavie Lavoie-Cardinal, Denis Boudreau

Surface-enhanced Raman scattering (SERS) spectroscopy represents a powerful analytical platform that combines non-destructive, label-free molecular identification with exceptional sensitivity for trace-level detection. Its capacity to generate information-rich spectral fingerprints makes SERS particularly advantageous for simultaneous multi-analyte analysis across diverse sample matrices, including complex biological systems. This study addresses the analytical challenges associated with identifying and quantifying multiple molecular species in complex environments by integrating SERS with advanced machine learning methodologies. We developed a hierarchical analytical framework that leverages the complementary strengths of deep learning and regression techniques: A multi-label convolutional neural network (CNN) for discriminating structurally similar analytes from SERS spectral data, coupled with a support vector regression (SVR) model for semi-quantitative determination of relative concentration ratios among identified species. The methodology was systematically validated using binary mixtures of short-chain fatty acids (SCFAs) as representative biomolecular targets, with performance rigorously benchmarked against established multivariate statistical methods and conventional machine learning approaches. Experimental validation demonstrated robust classification accuracy for both analytes at physiologically relevant concentrations, maintaining consistent performance across simple aqueous media and complex cell culture environments. These results establish the viability of the integrated SERS-CNN-SVR approach for advanced mixture analysis applications where precise identification and quantification of multiple biomarkers is essential.

表面增强拉曼散射(SERS)光谱代表了一个强大的分析平台,它结合了非破坏性,无标记的分子鉴定和对痕量水平检测的特殊灵敏度。其生成信息丰富的光谱指纹的能力使SERS在跨不同样品矩阵(包括复杂的生物系统)的同时多分析物分析中特别有利。本研究通过将SERS与先进的机器学习方法相结合,解决了在复杂环境中识别和量化多个分子物种的分析挑战。我们开发了一个层次分析框架,利用深度学习和回归技术的互补优势:一个多标签卷积神经网络(CNN)用于从SERS光谱数据中区分结构相似的分析物,再加上一个支持向量回归(SVR)模型用于半定量确定识别物种之间的相对浓度比。该方法以短链脂肪酸二元混合物(SCFAs)作为代表性生物分子靶标进行了系统验证,并根据已建立的多元统计方法和传统机器学习方法对性能进行了严格的基准测试。实验验证表明,在生理相关浓度下,两种分析物的分类准确性都很强,在简单的水介质和复杂的细胞培养环境中保持一致的性能。这些结果建立了集成SERS-CNN-SVR方法的可行性,用于高级混合物分析应用,其中精确识别和定量多种生物标志物是必不可少的。
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引用次数: 0
Noncontact Fiber Optic Probe for Clinical Applications of Raman Spectroscopy. EXPRESS:用于拉曼光谱临床应用的非接触式光纤探针。
IF 2.2 3区 化学 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2026-01-01 Epub Date: 2025-07-30 DOI: 10.1177/00037028251367062
Sean Fitzgerald, Eric Marple, Jay Werkhaven, Anita Mahadevan-Jansen

Clinical applications of Raman spectroscopy (RS) typically rely on fiber optic probes that directly interface with the tissue site. These devices are designed with small diameters, enabling them to navigate narrow body cavities and seamlessly integrate into routine medical instruments. However, the performance of conventional RS fiber probes suffers during noncontact operation due to decreased collection efficiency and a larger laser spot size that restricts spatial precision. To address these limitations, a novel RS probe design is presented here that can efficiently collect both fingerprint (FP) and high-wavenumber (HW) regions of the Raman spectrum at an offset from the target tissue using a miniature lens at the probe tip. The development process began with stochastic light propagation simulations that served as a foundation for the device's expected performance improvements compared to a standard RS probe design, which were then experimentally verified. Lenses were fabricated from various materials, including fused silica, quartz, sapphire, and calcium fluoride, to assess the impact of aberrant lens emissions on the analysis of tissue Raman features within the FP and HW spectral regions. Signal quality metrics are reported from in vivo tissue using each type of lens, demonstrating that crystalline lenses best preserve the weak Raman signal generated by tissues during dual-region RS analysis. Still, the ideal lens type will ultimately depend on material characteristics and which spectral region is required for tissue interrogation. This device demonstrated a 90% increase in signal intensity and a four-fold improvement in spatial selectivity compared to a conventional RS probe during noncontact operation. Finally, one embodiment of the noncontact probe is described to showcase a clinically compatible prototype, which incorporates a widefield camera module for positioning guidance during in vivo use.

拉曼光谱(RS)的临床应用通常依赖于直接与组织部位接触的光纤探针。这些设备的直径很小,使它们能够在狭窄的体腔中导航,并无缝地集成到常规医疗器械中。然而,传统的RS光纤探头在非接触操作时,由于收集效率降低和较大的激光光斑尺寸限制了空间精度,性能受到影响。为了解决这些限制,本文提出了一种新的RS探针设计,该探针可以在探针尖端使用微型透镜有效地收集指纹(FP)和拉曼光谱的高波数(HW)区域,这些区域与目标组织相偏移。开发过程从随机光传播模拟开始,作为与标准RS探头设计相比,该设备预期性能改进的基础,然后进行实验验证。透镜由多种材料制成,包括熔融二氧化硅、石英、蓝宝石和氟化钙,以评估透镜畸变发射对FP和HW光谱区域组织拉曼特征分析的影响。使用每种类型的晶体从体内组织中报告了信号质量指标,表明晶体透镜在双区域RS分析中最好地保存了组织产生的弱拉曼信号。尽管如此,理想的透镜类型最终将取决于材料特性和组织检测所需的光谱区域。在非接触式操作中,与传统RS探头相比,该装置的信号强度增加了90%,空间选择性提高了4倍。最后,描述了非接触式探头的一个实施例,以展示临床兼容的原型,该原型包含用于在体内使用期间定位引导的广角相机模块。
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引用次数: 0
Analysis of Liquids Using the Submerged Plasma for Isotopic Detection and Elemental Resolution (SPIDER). EXPRESS:用浸没等离子体分析液体的同位素检测和元素分辨率(SPIDER)。
IF 2.2 3区 化学 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2026-01-01 Epub Date: 2025-08-21 DOI: 10.1177/00037028251374696
Davis Bryars, Munmun Jahan, Kayla Hahn, Alina Jugan, Amanda Leong, Ammon Williams, Alexander Bataller

We developed a sensor called the Submerged Plasma for Isotopic Detection and Elemental Resolution (SPIDER) probe, which uses an atmospheric pressure glow discharge below the surface of liquids to excite species in the liquid. Through emission spectroscopy of molten salts, liquid metals, and heavy water, we demonstrated the SPIDER probe's high resolution, accuracy, and versatility. We successfully identified trace concentrations of transition and rare-earth metals in molten salts and detected the isotopic shift of the Hβ Dβ emission line. Our analysis revealed unconventional spectral alkali line shapes, indicating two competing excitation modes: film explosion and droplet vaporization. The film explosion mode, characterized by dense plasma, exhibited self-reversal and broadband continuum emission, while the droplet vaporization mode, associated with diffusive plasma, produced narrow-line emissions. By analyzing circuit transients alongside individual plasma events, we observed that film explosions generate higher currents, likely due to a shorter plasma length as the current preferentially flows through the thin liquid layer. Altogether, our results highlight the SPIDER probe's efficacy and flexibility, making it well-suited for online material quantification of liquids in extreme environments.

我们开发了一种名为沉入等离子体的传感器,用于同位素探测和元素分辨率(SPIDER)探针,它使用液体表面下的大气压辉光放电来激发液体中的物种。通过熔盐、液态金属和重水的发射光谱,我们展示了SPIDER探测器的高分辨率、准确性和多功能性。我们成功地鉴定了熔盐中痕量过渡金属和稀土金属的浓度,并检测了Hβ→Dβ发射谱线的同位素位移。我们的分析揭示了非常规的谱碱线形状,表明了两种相互竞争的激发模式:薄膜爆炸和液滴蒸发。以致密等离子体为特征的薄膜爆炸模式表现为自反转和宽带连续发射,而以扩散等离子体为特征的液滴汽化模式则表现为窄线发射。通过分析电路瞬态和单个等离子体事件,我们观察到薄膜爆炸产生更高的电流,可能是由于较短的等离子体长度,因为电流优先流过薄液体层。总之,我们的研究结果突出了SPIDER探针的有效性和灵活性,使其非常适合于极端环境下液体的在线材料定量。
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引用次数: 0
Re-Examining Tip-Enhanced Raman Signals at High Spatial Resolution Under Ambient Conditions Using Graphene Nanobubbles. EXPRESS:在环境条件下使用石墨烯纳米气泡重新检测高空间分辨率的尖端增强拉曼信号。
IF 2.2 3区 化学 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2026-01-01 Epub Date: 2025-09-16 DOI: 10.1177/00037028251382936
Yuto Fujita, Norihiko Hayazawa, Maria Vanessa Balois-Oguchi, Satoshi Yasuda, Takuo Tanaka, Tomoko K Shimizu

High-spatial-resolution tip-enhanced Raman spectroscopy (TERS) measurements were carried out under ambient conditions on graphene nanobubbles with various associated structural features. The resulting signals were analyzed with consideration of the characteristic features inherent to high resolution TERS. Compared to flat graphene regions, nanobubbles and their associated nanoconvex pinning sites demonstrated enhanced TERS signals, attributed to the efficient coupling between the strong tip-enhanced electric field and out-of-plane deformations in graphene. Strong coupling with highly confined near-field light activates the D bands even in the absence of defects, with intensity depending on the degree of deformations. While the D band is observed across the nanobubbles, some local regions exhibit a weaker D band intensity compared to the surrounding areas. Given the finite number of hexagonal lattices within the area of highly confined near-field, this reduction in intensity is likely to result from defects that cause missing hexagonal lattices. These findings highlight the capability of near-field induced Raman signals in probing high resolution features of nanomaterials even under ambient conditions, providing deeper insights into their characteristics in situ.

在环境条件下对具有各种相关结构特征的石墨烯纳米泡进行了高空间分辨率尖端增强拉曼光谱(TERS)测量。考虑高分辨率TERS固有的特征特征,对得到的信号进行了分析。与平坦的石墨烯区域相比,纳米气泡及其相关的纳米凸钉钉位点显示出增强的TERS信号,这归因于强尖端增强电场与石墨烯中的面外变形之间的有效耦合。即使在没有缺陷的情况下,与高度受限的近场光的强耦合也会激活D波段,其强度取决于变形的程度。虽然在整个纳米气泡中观察到D波段,但与周围区域相比,一些局部区域表现出较弱的D波段强度。在高度受限的近场区域内,由于六边形晶格的数量有限,这种强度的降低很可能是由于缺陷导致六边形晶格缺失造成的。这些发现突出了近场诱导拉曼信号在环境条件下探测纳米材料高分辨率特征的能力,为其原位特性提供了更深入的了解。
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引用次数: 0
Morphology-Enhanced Rolling Ball Algorithm for Baseline Removal. EXPRESS:基于形态增强的滚动球基线去除算法。
IF 2.2 3区 化学 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2026-01-01 Epub Date: 2025-09-18 DOI: 10.1177/00037028251384654
Xiaoyang Li, Hanjun Zhang, Zhong Wang, Yuee Li

As a preprocessing step of spectroscopic techniques such as Raman spectroscopy, infrared spectroscopy, electrophoresis, etc., the baseline correction is very important for improving the signal quality, thereby ensuring the reliability and accuracy of the data analysis. Methods such as polynomial fitting, wavelet transforms, and frequency-domain filtering are widely used for baseline correction, effectively reducing interference and enhancing the reliability of signal analysis. However, these methods have certain limitations: (i) Polynomial fitting faces challenges in determining the optimal order, which may affect the fitting quality, (ii) wavelet transforms are complex and require fine adjustments, and (iii) frequency-domain filtering may cause signal distortion. These shortcomings affect the implementation of the algorithm in spectral related industries. Therefore, finding an appropriate algorithm to optimize baseline removal is crucial for the development of automated spectral analysis equipment. Here, we propose a rolling ball baseline removal algorithm based on morphological operations. With its simple implementation and excellent baseline removal performance, this method effectively avoids the overfitting problems. It is suitable for baseline correction in not only Raman spectroscopy, but also various other types of spectral data. In all, this approach offers a convenient and efficient general solution for the processing of various spectral data.

基线校正作为拉曼光谱、红外光谱、电泳等光谱技术的预处理步骤,对于提高信号质量,从而保证数据分析的可靠性和准确性非常重要。目前广泛采用多项式拟合、小波变换、频域滤波等方法进行基线校正,有效地减少了干扰,提高了信号分析的可靠性。但这些方法存在一定的局限性:(1)多项式拟合难以确定最优阶数,可能影响拟合质量;(2)小波变换复杂,需要精细调整;(3)频域滤波可能导致信号失真。这些缺点影响了该算法在频谱相关行业的实现。因此,寻找一种合适的算法来优化基线去除对于自动化光谱分析设备的开发至关重要。本文提出了一种基于形态学操作的滚动球基线去除算法。该方法实现简单,基线去除性能好,有效避免了过拟合问题。它不仅适用于拉曼光谱的基线校正,也适用于各种其他类型的光谱数据。总之,该方法为各种光谱数据的处理提供了一种方便、高效的通用解决方案。
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引用次数: 0
EXPRESS: Spatiotemporal Visualization of the Formation and Decay of THermally-induced Optical Reflection of Sound (THORS) Barriers in Ambient Air. EXPRESS:环境空气中热致光反射声屏障的形成和衰减的时空可视化。
IF 2.2 3区 化学 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2025-12-22 DOI: 10.1177/00037028251413279
Alex J Reardon, Brian M Cullum

This paper provides the first temporally resolved visualization of the formation and decay profiles of THermally-induced Optical Reflection of Sound (THORS) barriers in ambient air, revealing the spatiotemporal characteristics of these novel acoustic barriers. In this work, a 532 nm Nd:YAG coupled with an intensified charge coupled device (ICCD) is used to Raman image N2 in ambient air, thereby allowing for the visualization of the spatial dynamics of the air density variations at these THORS barriers. Studies were conducted at various ambient temperatures and with air turbulence across the beam path revealing no change in barrier size or shape under typical environmental disturbance conditions. Raman images of a barrier formed by a repetitively pulsed CO laser reveal an abrupt barrier density change between the optically depleted region and the surrounding air, with the slope of the imaged barrier density increasing rapidly during the first 20 ms of barrier formation, indicative of the predicted increase in barrier abruptness associated with enhanced THORS efficiency. As seen in previous temporal studies of THORS barrier efficiencies, these images reveal that multiple laser pulses at an optimized optical frequency are capable of achieving maximum continuous suppression efficiencies through molecular depletion in the optically excited region. These imaging studies revealed that the maximum barrier efficiency required a minimum of eight laser pulses to achieve the desired barrier density change and depletion, agreeing with previous temporal studies that showed in maximum suppression efficiency after 16 ms with one ms excitation laser pulses. Furthermore, visualization of the barrier size revealed that thermal redistribution of the photothermally excited molecules resulted in a THORS barrier approximately 50% larger than the excitation beam width and that this barrier remains constant for as long as 15 ms after the final laser pulse and at laser powers between 50 and 250 W.

本文首次提供了环境空气中热致声光反射(THORS)屏障形成和衰减曲线的时间分辨可视化,揭示了这些新型声障的时空特征。在这项工作中,使用532 nm Nd:YAG与强化电荷耦合器件(ICCD)耦合对环境空气中的N2进行拉曼成像,从而可以可视化这些THORS屏障处空气密度变化的空间动力学。研究在不同的环境温度下进行,在光束路径上有空气湍流,在典型的环境扰动条件下,屏障的大小和形状没有变化。由重复脉冲CO激光形成的势垒的拉曼图像显示,光耗尽区域和周围空气之间的势垒密度发生了突然变化,在势垒形成的前20 ms期间,成像势垒密度的斜率迅速增加,表明预测的势垒陡度增加与THORS效率的提高有关。正如之前对THORS势垒效率的时间研究中所看到的,这些图像表明,在优化的光频率下,多个激光脉冲能够通过光激发区的分子耗尽来实现最大的连续抑制效率。这些成像研究表明,最大势垒效率需要至少8个激光脉冲才能实现所需的势垒密度变化和消耗,这与先前的时间研究一致,该研究表明,在1 ms激发激光脉冲的16 ms后,最大抑制效率达到最大。此外,势垒尺寸的可视化显示,光热激发分子的热再分配导致THORS势垒大约比激发光束宽度大50%,并且该势垒在最终激光脉冲后15 ms内保持不变,激光功率在50到250 W之间。
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引用次数: 0
Advanced Hyperspectral Signature Processing for Chemical Stress Detection in Vegetable Leaves Using Hierarchical Feature Extraction and Enhanced Ensemble Model. 基于层次特征提取和增强集成模型的蔬菜叶片化学应力检测的高级高光谱特征处理。
IF 2.2 3区 化学 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2025-12-18 DOI: 10.1177/00037028251411953
Anju Augustin, Cinu C Kiliroor

The increasing concern about the presence of pesticides in vegetable leaves has underscored an urgent need for real-time, nondestructive, and accurate detection methods. Traditional methods are reliable but laboratory-based, costly, and unsuitable for field monitoring. In this study, we propose an efficient learning model pipeline that uses hyperspectral reflectance signatures to detect pesticide residue in plant leaves. We extract a comprehensive set of 39 domain-specific features based on vegetation indices, red-edge metrics, spectral statistics, and derivative profiles. To enhance the performance, use a multilayer perceptron to extract more features. A feature fusion module is used to combine both domain-specific features and features extracted by a multilayer perceptron. Further refinement is achieved through a feed-forward attention scoring module that dynamically weights important features. The efficiency of the system is evaluated using an enhanced extra trees classifier, which shows superior classification performance and stability across different feature formats. With cross-validation, our model achieves an accuracy of 94.69%, significantly outperforming conventional classifiers such as convolutional neural networks, support vector machines, and ensemble models such as random forest and extra trees. This framework not only improves interpretability and performance but also provides a foundation for a real-time, on-site pesticide monitoring solution.

随着人们对蔬菜叶片中农药残留的日益关注,迫切需要实时、无损、准确的检测方法。传统方法可靠,但基于实验室,成本高,不适合现场监测。在这项研究中,我们提出了一个高效的学习模型管道,利用高光谱反射特征来检测植物叶片中的农药残留。我们基于植被指数、红边度量、光谱统计和衍生剖面提取了39个域特定特征的综合集。为了提高性能,使用多层感知器来提取更多的特征。特征融合模块用于将领域特定特征和多层感知器提取的特征结合起来。进一步的细化是通过一个前馈注意力评分模块来实现的,该模块动态地对重要的特征进行加权。使用增强型额外树分类器对系统的效率进行了评估,该分类器在不同的特征格式中表现出优异的分类性能和稳定性。通过交叉验证,我们的模型达到了94.69%的准确率,显著优于卷积神经网络(CNN)、支持向量机(SVM)和随机森林(RF)和Extra Trees等集成模型等传统分类器。该框架不仅提高了可解释性和性能,而且为实时、现场农药监测解决方案提供了基础。
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引用次数: 0
Characterization and Identification of Biogenic Minerals from Different Growing Environments Using Infrared and Raman Spectroscopies Including Low-Frequency Regions. EXPRESS:利用红外和拉曼光谱(包括低频区)表征和鉴定来自不同生长环境的生物矿物。
IF 2.2 3区 化学 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2025-12-18 DOI: 10.1177/00037028251412916
Kohei Tamura, Motohiro Tsuboi, Ken-Ichi Akao, Harumi Sato, Yukihiro Ozaki

Attenuated total reflection infrared-far-infrared (ATR IR-FIR) spectra (4000-50 cm-1) and Raman spectra (2000-50 cm-1) were measured for twelve types of biogenic minerals (shells), including Corbicula sandai (aragonite), Corbicula fluminea (aragonite), Corbicula japonica (aragonite), Ruditapes philippinarum (aragonite), and Mytilus galloprovincialis (aragonite and calcite) from different origins and growing environments. In this study, we investigated the crystal structures of these biogenic minerals, the water contents and structure in them, and the differences in the crystal structures among the aragonite forms of these minerals. In the 4000-3000 cm-1 region and around the 1650 cm-1 band region in the IR spectra, the proportion of the IR absorption bands related to weak and strong hydrogen bonds was significantly different among the shellfish species investigated. Therefore, it has been found that IR spectroscopy is useful for discriminating among shells based on the content and structure of water such as hydrogen bonds. In the low-frequency region below 500 cm-1, where bands corresponding to lattice vibrational modes are observed, we investigated the lattice vibration modes of aragonite of shells and discussed particularly the full width at half-maximum (FWHM) of the bands at around 267 cm-1 in the FIR spectra and the intensity of the side band at around 140 cm-1 in the Raman spectra. As a result, we demonstrated that using both IR and Raman spectroscopies including the low-frequency regions allows us to distinguish various biogenic minerals from different habitats and growing environments. Additionally, it suggests that both IR and Raman spectroscopies including low-frequency regions are useful for characterizing habitats of shellfish.

对不同产地和生长环境的12种生物矿物(贝壳)进行了衰减全反射红外-远红外(ATR IR-FIR)光谱(4000 ~ 50 cm-1)和拉曼光谱(2000 ~ 50 cm-1)测量,其中包括砂台Corbicula sandai(文石)、氟石Corbicula fluminea(文石)、日本Corbicula japonica(文石)、菲律宾文石Ruditapes philinarum(文石)和加洛省Mytilus galloprovincialis(文石和方解石)。在本研究中,我们研究了这些生物矿物的晶体结构,其中的水分含量和结构,以及这些矿物的文石形式之间晶体结构的差异。在红外光谱的4000 ~ 3000 cm-1区域和1650 cm-1波段附近,不同贝类的弱氢键和强氢键相关的红外吸收带所占比例有显著差异。因此,红外光谱可以根据水的含量和结构(如氢键)来区分壳层。在500 cm-1以下的低频区,观察到相应的晶格振动模式,我们研究了壳文石的晶格振动模式,并特别讨论了FIR光谱中267 cm-1左右波段的半最大值全宽度(FWHM)和拉曼光谱中140 cm-1左右边带的强度。因此,我们证明了使用红外光谱和拉曼光谱(包括低频区域)可以让我们区分来自不同栖息地和生长环境的各种生物矿物。此外,这表明红外光谱和拉曼光谱包括低频区域都有助于表征贝类的栖息地。
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引用次数: 0
Optimization of Data Collection for Visible-Near-Infrared Fiber Optic Spectroscopy of Osteochondral Tissues in Hydrated Environments. EXPRESS:水合环境下骨软骨组织可见-近红外光纤光谱数据采集优化。
IF 2.2 3区 化学 Q2 INSTRUMENTS & INSTRUMENTATION Pub Date : 2025-12-14 DOI: 10.1177/00037028251411328
Amanda Spurri, Mohammed Shahriar Arefin, William Querido, Shu-Jin Kust, Marina Santos, Thomas P Schaer, Binyam Fentaw, Daniela Proca, Leslie Barnes, Chetan Patil, Nancy Pleshko

Arthroscopic procedures rely on qualitative methods for cartilage assessment, such as tissue visualization and mechanical probing. visible-near-infrared (Vis-NIR) spectroscopy offers the potential to include compositional tissue characterization which could improve surgical guidance. The primary objective of this study was to assess the feasibility of using a fiber optic Vis-NIR probe in environments typically experienced during arthroscopy. Given the geometric constraints of articulating joints, a probe was fabricated with a 90-degree bend at the tip to enable movement and access to tissues. Absorbances from arthroscopic irrigation fluid (saline) are prominent in the NIR spectral region and thus need to be minimized during spectral collection. The current study aims to identify spectral data where the probe was not in contact with the tissues and/or where environmental saline contributed to the spectra. Porcine patella tissues were used to model how spectra collection in various conditions (probe offset from tissue and presence of fluid) impact spectra. Spectra were collected from cartilage, bone, and osteochondral tissues (n = 6 each) in experimental configurations with and without tissue contact and/or saline. Additionally, arthroscopic spectra collection in an equine stifle joint was investigated. Spectra collected while the fiber optic probe was in contact with the tissues resulted in minimal impact of environmental saline. Principal component analysis of spectra resulted in the separation of groups based on experimental configuration, demonstrating the potential for the development of more advanced machine learning algorithms focused on exclusion of spectra without appropriate tissue contact and with saline interference.

关节镜手术依赖于软骨评估的定性方法,如组织可视化和机械探测。可见-近红外(Vis-NIR)光谱学提供了包括成分组织表征的潜力,可以改善手术指导。本研究的主要目的是评估在关节镜检查的典型环境中使用光纤Vis-NIR探针的可行性。考虑到关节的几何限制,探针的尖端有90度弯曲,可以移动和接近组织。来自关节镜冲洗液(生理盐水)的吸收在近红外光谱区很突出,因此在光谱收集过程中需要尽量减少。目前的研究旨在确定探针未与组织接触和/或环境盐水对光谱产生影响的光谱数据。猪髌骨组织被用来模拟各种条件下的光谱收集(探针偏离组织和存在液体)对光谱的影响。在有和没有组织接触和/或生理盐水的实验配置下,从软骨、骨和骨软骨组织(各n = 6)收集光谱。此外,研究了马膝关节的关节镜光谱采集。当光纤探针与组织接触时收集的光谱导致环境盐水的影响最小。光谱的主成分分析导致基于实验配置的组分离,证明了开发更先进的机器学习算法的潜力,该算法专注于在没有适当组织接触和盐水干扰的情况下排除光谱。
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Applied Spectroscopy
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