Pub Date : 2024-12-18DOI: 10.1177/00037028241300554
Felix Frank, Bettina Baumgartner, Mattias Verstuyft, Nuria Teigell Beneitez, Jeroen Missinne, Dries Van Thourhout, Gunther Roelkens, Bernhard Lendl
Volatile organic compounds (VOCs) are an ever-growing hazard for health and environment due to their increased emissions and accumulation in the air. Quantum cascade laser-based infrared (QCL-IR) sensors hold significant promise for gas monitoring, thanks to their compact, rugged design, high laser intensity, and high molecule-specific detection capabilities within the mid-infrared spectrum's fingerprint region. In this work, tunable external cavity QCLs were complemented by an innovative germanium-on-silicon integrated optics waveguide sensing platform with integrated microlenses for efficient backside optical interfacing for the tunable laser spectrometer. The waveguide chip was coated with a mesoporous silica coating, thereby increasing the signal by adsorptive enhancement of VOCs while at the same time limiting water vapor interferences. Different least square fitting methods were explored to deconvolute the resulting spectra, showing subparts-per-million by volume (sub-ppmv) limits of detection and enrichment factors of up to 22 000 while keeping the footprint of the setup small (29 × 23 × 11 cm³). Finally, a use-case simulation for the continuous detection of VOCs in a process analytical technology environment confirmed the high potential of the technique for the monitoring of contaminants. By successfully demonstrating the use of photonic waveguides for the monitoring of VOCs, this work offers a promising avenue for the further development of fully integrated sensors on a chip.
{"title":"Integrated Optics Waveguides and Mesoporous Oxides for the Monitoring of Volatile Organic Compound Traces in the Mid-Infrared.","authors":"Felix Frank, Bettina Baumgartner, Mattias Verstuyft, Nuria Teigell Beneitez, Jeroen Missinne, Dries Van Thourhout, Gunther Roelkens, Bernhard Lendl","doi":"10.1177/00037028241300554","DOIUrl":"https://doi.org/10.1177/00037028241300554","url":null,"abstract":"<p><p>Volatile organic compounds (VOCs) are an ever-growing hazard for health and environment due to their increased emissions and accumulation in the air. Quantum cascade laser-based infrared (QCL-IR) sensors hold significant promise for gas monitoring, thanks to their compact, rugged design, high laser intensity, and high molecule-specific detection capabilities within the mid-infrared spectrum's fingerprint region. In this work, tunable external cavity QCLs were complemented by an innovative germanium-on-silicon integrated optics waveguide sensing platform with integrated microlenses for efficient backside optical interfacing for the tunable laser spectrometer. The waveguide chip was coated with a mesoporous silica coating, thereby increasing the signal by adsorptive enhancement of VOCs while at the same time limiting water vapor interferences. Different least square fitting methods were explored to deconvolute the resulting spectra, showing subparts-per-million by volume (sub-ppmv) limits of detection and enrichment factors of up to 22 000 while keeping the footprint of the setup small (29 × 23 × 11 cm³). Finally, a use-case simulation for the continuous detection of VOCs in a process analytical technology environment confirmed the high potential of the technique for the monitoring of contaminants. By successfully demonstrating the use of photonic waveguides for the monitoring of VOCs, this work offers a promising avenue for the further development of fully integrated sensors on a chip.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241300554"},"PeriodicalIF":2.2,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142845702","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-16DOI: 10.1177/00037028241303944
Callum E Twining, Paige K Williams, Whitney E Schuler, Caitlyn M English, Tammi L Richardson, Michael L Myrick
Environmental fluorescence measurements sometimes use water Raman scattering as an internal standard to compensate for path length, lensing effects, and turbidity. Fluorescent dissolved organic matter (FDOM) in water may interfere strongly with the measurement of this reference. However, fluorescence in fluid solution is largely unpolarized, while the OH stretching Raman band of water is always strongly polarized. Using an environmental sample from Lake Wateree in South Carolina, USA, we demonstrate that judicious use of this polarization allows for a significant level of improvement in the contrast or visibility of the water Raman band relative to FDOM.
{"title":"Using Polarization to Increase Contrast of Water OH Raman Scattering Relative to Fluorescence of Dissolved Organic Matter.","authors":"Callum E Twining, Paige K Williams, Whitney E Schuler, Caitlyn M English, Tammi L Richardson, Michael L Myrick","doi":"10.1177/00037028241303944","DOIUrl":"https://doi.org/10.1177/00037028241303944","url":null,"abstract":"<p><p>Environmental fluorescence measurements sometimes use water Raman scattering as an internal standard to compensate for path length, lensing effects, and turbidity. Fluorescent dissolved organic matter (FDOM) in water may interfere strongly with the measurement of this reference. However, fluorescence in fluid solution is largely unpolarized, while the OH stretching Raman band of water is always strongly polarized. Using an environmental sample from Lake Wateree in South Carolina, USA, we demonstrate that judicious use of this polarization allows for a significant level of improvement in the contrast or visibility of the water Raman band relative to FDOM.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241303944"},"PeriodicalIF":2.2,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142833789","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-16DOI: 10.1177/00037028241302352
Doyinsola S Sonoiki, Kyei Kwarkye, Klavs M Sørensen, Søren B Engelsen, Ole Bang, Christian R Petersen
Combining near-infrared (NIR) and mid-infrared (MIR) spectroscopy to cover both the fundamental and overtone combination molecular vibrational resonances allows more robust analytical methods to be used, such as two-dimensional correlation spectroscopy. However, due to the strong differences in molar absorption coefficients and transparency of the optical material, it is inherently difficult to perform NIR and MIR spectroscopy on aqueous samples using a single instrument. Combining spectra from different instruments and sample presentations can result in unwanted spectral variations, which can influence the prediction models and mitigate the advantages of the combination approaches. In this work, a more consistent instrument response is achieved by combining a single supercontinuum (SC) laser spanning from 1000 to 4000 nm as the light source, with an attenuated total reflection crystal and a transmission cuvette in a single-path configuration. Using this approach, NIR-MIR correlation spectroscopy is demonstrated using a set of 22 aqueous samples with varying concentrations of ethanol, sucrose, and ʟ-proline.
{"title":"Single-Path Supercontinuum Near- to Mid-Infrared Correlation Spectroscopy of Aqueous Samples.","authors":"Doyinsola S Sonoiki, Kyei Kwarkye, Klavs M Sørensen, Søren B Engelsen, Ole Bang, Christian R Petersen","doi":"10.1177/00037028241302352","DOIUrl":"https://doi.org/10.1177/00037028241302352","url":null,"abstract":"<p><p>Combining near-infrared (NIR) and mid-infrared (MIR) spectroscopy to cover both the fundamental and overtone combination molecular vibrational resonances allows more robust analytical methods to be used, such as two-dimensional correlation spectroscopy. However, due to the strong differences in molar absorption coefficients and transparency of the optical material, it is inherently difficult to perform NIR and MIR spectroscopy on aqueous samples using a single instrument. Combining spectra from different instruments and sample presentations can result in unwanted spectral variations, which can influence the prediction models and mitigate the advantages of the combination approaches. In this work, a more consistent instrument response is achieved by combining a single supercontinuum (SC) laser spanning from 1000 to 4000 nm as the light source, with an attenuated total reflection crystal and a transmission cuvette in a single-path configuration. Using this approach, NIR-MIR correlation spectroscopy is demonstrated using a set of 22 aqueous samples with varying concentrations of ethanol, sucrose, and ʟ-proline.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241302352"},"PeriodicalIF":2.2,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142833787","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-16DOI: 10.1177/00037028241303780
Anis Athirah Abdul Razak, Liyana Shatar, Aima Ramli, Syara Kassim, Mohd Sabri Mohd Ghazali, Hui Yee Chee, Rozalina Zakaria, Mohd Adzir Mahdi, Fariza Hanim Suhailin
Leptospirosis is an acute bacterial febrile disease affecting humans and animals in many tropical and subtropical countries. This work presents an optimization of surface-enhanced Raman spectroscopy (SERS) substrates to probe vibrational spectroscopic detail from Leptospira deoxyribonucleic acid (DNA). The pathogenic gene of LipL32 was used as a biomarker. The SERS substrates were based on a photonic crystal (PC) structure embedded with bi-metallic gold and silver nanoparticles (PC@AuAg NPs). The localized plasmonic resonance of AuAg NPs was coupled to the Raman modes of the target through SERS interaction. Prior to detection, the AuAg NPs were functionalized with chemical linkers to facilitate specific conjugation between metallic surfaces and DNA biomolecules. The immobilization and hybridization of probe DNA to their complementary target DNA (cDNA) created duplex formation for detection. The configuration was also tested with non-complementary DNA to verify detection specificity. Prominent SERS peaks were recorded, and the characteristic intensity decreased after cDNA hybridization due to less base interaction after complementary pairing. Distinct SERS behavior from the negative control test was also observed in non-complementary interaction. The configuration is highly attractive and can be potentially extended for sensitive and label-free detection of leptospiral DNA, paving the way for alternative diagnosis of leptospirosis.
{"title":"Surface-Enhanced Raman Spectroscopy (SERS) Substrates Based on Photonic Crystal Embedded Bi-Metallic Nanoparticles for Leptospiral DNA Detection.","authors":"Anis Athirah Abdul Razak, Liyana Shatar, Aima Ramli, Syara Kassim, Mohd Sabri Mohd Ghazali, Hui Yee Chee, Rozalina Zakaria, Mohd Adzir Mahdi, Fariza Hanim Suhailin","doi":"10.1177/00037028241303780","DOIUrl":"https://doi.org/10.1177/00037028241303780","url":null,"abstract":"<p><p>Leptospirosis is an acute bacterial febrile disease affecting humans and animals in many tropical and subtropical countries. This work presents an optimization of surface-enhanced Raman spectroscopy (SERS) substrates to probe vibrational spectroscopic detail from <i>Leptospira</i> deoxyribonucleic acid (DNA). The pathogenic gene of LipL32 was used as a biomarker. The SERS substrates were based on a photonic crystal (PC) structure embedded with bi-metallic gold and silver nanoparticles (PC@AuAg NPs). The localized plasmonic resonance of AuAg NPs was coupled to the Raman modes of the target through SERS interaction. Prior to detection, the AuAg NPs were functionalized with chemical linkers to facilitate specific conjugation between metallic surfaces and DNA biomolecules. The immobilization and hybridization of probe DNA to their complementary target DNA (cDNA) created duplex formation for detection. The configuration was also tested with non-complementary DNA to verify detection specificity. Prominent SERS peaks were recorded, and the characteristic intensity decreased after cDNA hybridization due to less base interaction after complementary pairing. Distinct SERS behavior from the negative control test was also observed in non-complementary interaction. The configuration is highly attractive and can be potentially extended for sensitive and label-free detection of leptospiral DNA, paving the way for alternative diagnosis of leptospirosis.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241303780"},"PeriodicalIF":2.2,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142833788","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-15DOI: 10.1177/00037028241305415
Muqian Wen
Fourier transform spectrometers typically use a presumed monochromatic reference source to track and correct errors in optical path difference changes. This paper will conduct a theoretical analysis to show that non-monochromatic light sources with symmetric spectral profiles can also be used as reference sources without adding errors. An experiment was carried out using a symmetric broadband superluminescent diode (SLED) as reference light to measure the spectrum of some other SLED light sources to experimentally demonstrate this finding.
{"title":"Symmetric Non-Monochromatic Light as Reference in Fourier Transform Spectrometers.","authors":"Muqian Wen","doi":"10.1177/00037028241305415","DOIUrl":"https://doi.org/10.1177/00037028241305415","url":null,"abstract":"<p><p>Fourier transform spectrometers typically use a presumed monochromatic reference source to track and correct errors in optical path difference changes. This paper will conduct a theoretical analysis to show that non-monochromatic light sources with symmetric spectral profiles can also be used as reference sources without adding errors. An experiment was carried out using a symmetric broadband superluminescent diode (SLED) as reference light to measure the spectrum of some other SLED light sources to experimentally demonstrate this finding.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241305415"},"PeriodicalIF":2.2,"publicationDate":"2024-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142827245","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-10DOI: 10.1177/00037028241297179
Rui Cheng, Thomas G Mayerhöfer, Johannes Kiefer
Attenuated total reflection (ATR) spectroscopy in infrared is a standard tool used in most analytical labs, as it allows a rapid chemical analysis with virtually no sample preparation. However, when the sample contains materials with a high refractive index, special care must be taken as the resulting data may be severely biased. This article reports a theoretical approach to correcting distorted ATR spectra. Starting from Snell's law, Lorenz model and Fresnel's equations are combined to obtain the complex relationship between optical constants. With calculating the real and imaginary parts, that is, and , respectively, of the complex refractive index from the absorption spectrum, a model for mixtures comprising of a liquid and a solid is established. The effects of distortion and potential misinterpretation of the data are discussed. Proof-of-concept experiments with mixtures of carbonaceous materials and toluene confirm the theoretically predicted observations.
{"title":"Theoretical Calculation and Simulation of Peak Distortion of Absorption Spectra of Complex Mixtures.","authors":"Rui Cheng, Thomas G Mayerhöfer, Johannes Kiefer","doi":"10.1177/00037028241297179","DOIUrl":"https://doi.org/10.1177/00037028241297179","url":null,"abstract":"<p><p>Attenuated total reflection (ATR) spectroscopy in infrared is a standard tool used in most analytical labs, as it allows a rapid chemical analysis with virtually no sample preparation. However, when the sample contains materials with a high refractive index, special care must be taken as the resulting data may be severely biased. This article reports a theoretical approach to correcting distorted ATR spectra. Starting from Snell's law, Lorenz model and Fresnel's equations are combined to obtain the complex relationship between optical constants. With calculating the real and imaginary parts, that is, <math><mi>n</mi><mo>(</mo><mi>ν</mi><mo>)</mo></math> and <math><mi>k</mi><mo>(</mo><mi>ν</mi><mo>)</mo></math>, respectively, of the complex refractive index from the absorption spectrum, a model for mixtures comprising of a liquid and a solid is established. The effects of distortion and potential misinterpretation of the data are discussed. Proof-of-concept experiments with mixtures of carbonaceous materials and toluene confirm the theoretically predicted observations.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241297179"},"PeriodicalIF":2.2,"publicationDate":"2024-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142799264","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-09DOI: 10.1177/00037028241297180
Bo Wang, Pu Zhang, Wei Zhao, Wenzhen Ren, Xiangping Zhu, Ying Jiao, Qi Liao, Zhen Yao
Raman spectroscopy is widely used for material detection due to its specificity, but its application to spectral recognition often faces limitations due to insufficient training data, unlike fields such as image recognition. Traditional machine learning or basic neural networks are commonly used, but they have limited ability to achieve high precision. We have proposed a novel approach that combines the Triplet network (TN) and K-nearest neighbor (KNN) techniques to address this issue. TN maps the Raman spectral sequences to a 128-dimensional Euclidean space to extract features, enabling the features in the new space to more accurately represent the similarities or differences between spectra, and then utilizes the KNN algorithm to perform classification tasks in this feature space. Our method exhibits superior performance in recognizing unknown Raman spectra with minimal training samples per class. We employed a handheld Raman spectrometer with an excitation wavelength of 785 nm to collect the Raman spectra of 36 samples, including 28 safe materials and eight hazardous materials. Using only one spectrum as a support set for each category, the hazardous samples were successfully distinguished from the safe samples with an accuracy of 99.6%. Additionally, our model offers adaptability without requiring exhaustive retraining when adding new prediction classes. In situations with high background fluorescence, the TN performs better in measuring the distance between spectra of the same class than traditional distance measurement methods.
{"title":"Triplet Network for One-Shot Raman Spectrum Recognition.","authors":"Bo Wang, Pu Zhang, Wei Zhao, Wenzhen Ren, Xiangping Zhu, Ying Jiao, Qi Liao, Zhen Yao","doi":"10.1177/00037028241297180","DOIUrl":"https://doi.org/10.1177/00037028241297180","url":null,"abstract":"<p><p>Raman spectroscopy is widely used for material detection due to its specificity, but its application to spectral recognition often faces limitations due to insufficient training data, unlike fields such as image recognition. Traditional machine learning or basic neural networks are commonly used, but they have limited ability to achieve high precision. We have proposed a novel approach that combines the Triplet network (TN) and K-nearest neighbor (KNN) techniques to address this issue. TN maps the Raman spectral sequences to a 128-dimensional Euclidean space to extract features, enabling the features in the new space to more accurately represent the similarities or differences between spectra, and then utilizes the KNN algorithm to perform classification tasks in this feature space. Our method exhibits superior performance in recognizing unknown Raman spectra with minimal training samples per class. We employed a handheld Raman spectrometer with an excitation wavelength of 785 nm to collect the Raman spectra of 36 samples, including 28 safe materials and eight hazardous materials. Using only one spectrum as a support set for each category, the hazardous samples were successfully distinguished from the safe samples with an accuracy of 99.6%. Additionally, our model offers adaptability without requiring exhaustive retraining when adding new prediction classes. In situations with high background fluorescence, the TN performs better in measuring the distance between spectra of the same class than traditional distance measurement methods.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241297180"},"PeriodicalIF":2.2,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142799265","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-08DOI: 10.1177/00037028241300535
Hadi Barati, Arian Mousavi Madani, Sorena Shadzinavaz, Mehdi Fardmanesh
In this paper, a new model is presented for estimation of the blood glucose level from the measured near-infrared absorbance. The model has been developed in such a way that the regression coefficients of this linear relation have been approximated by considering only the molar absorptivity of the glucose and the obtained coefficients have been utilized to estimate the blood glucose levels from the measured absorbances. The estimation of the blood glucose concentrations by this blind approach exhibited an acceptable accuracy in comparison to the more accurate principal components regression method. The blood sample absorbances have been measured using a Fourier transform infrared device while the blood glucose levels have been determined by a commercial finger-prick glucometer device.
{"title":"Principal Component Analysis and Near-Infrared Spectroscopy as Noninvasive Blood Glucose Assay Methods.","authors":"Hadi Barati, Arian Mousavi Madani, Sorena Shadzinavaz, Mehdi Fardmanesh","doi":"10.1177/00037028241300535","DOIUrl":"https://doi.org/10.1177/00037028241300535","url":null,"abstract":"<p><p>In this paper, a new model is presented for estimation of the blood glucose level from the measured near-infrared absorbance. The model has been developed in such a way that the regression coefficients of this linear relation have been approximated by considering only the molar absorptivity of the glucose and the obtained coefficients have been utilized to estimate the blood glucose levels from the measured absorbances. The estimation of the blood glucose concentrations by this blind approach exhibited an acceptable accuracy in comparison to the more accurate principal components regression method. The blood sample absorbances have been measured using a Fourier transform infrared device while the blood glucose levels have been determined by a commercial finger-prick glucometer device.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241300535"},"PeriodicalIF":2.2,"publicationDate":"2024-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142794314","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-05DOI: 10.1177/00037028241296158
Andrew T Weakley, David A Parks, Arthur L Miller
Respirable dust mass is a prevalent occupational health hazard to the mining workforce. Mineral matrices observed in the mine environment are complex, time varying, and heterogeneous. This poses a challenge to assessing dust exposure using Fourier transform infrared (FT-IR) spectrometry as calibrations for constituent dust species (e.g., crystalline silica) have historically been trained using homogeneous standards or simple mixtures therein. Investigations have considered direct-on-filter analysis, which collects FT-IR spectra directly from sampling filters for calibration, as an alternative. Direct-on-filter analysis using a partial least squares (PLS) method has gained particular interest recently due to the potential to rapidly quantify multiple species from a single filter at the mine site. By design, heterogeneity, and its presumed impact on method accuracy, cannot be addressed in the laboratory when using a direct-on-filter approach motivating the need for more advanced calibration approaches. When heterogeneity is present, mixture of experts (MoE) finite mixture models offer a promising and novel alternative to PLS direct-on-filter analysis as MoE incorporates cluster discovery, regression, and outlier identification into model fitting. Three MoE models of increasing complexity were tasked with determining respirable dust mass in 243 field samples from thirteen active coal, limestone, sandstone, and silver mines. All MoE models, including those using only "expert" spectroscopic predictors or a combination of expert and categorical "gate" variables (e.g., mine type), significantly outperform PLS in terms of accuracy (α = 0.05). Decomposing bias by mine type shows that accuracy generally improves across all types considered when MoE models are not overfitted. The MoE method's effectiveness was linked to its ability to endogenously classify outliers as well as possibly to the use of an additional cluster model for mass predictions. Overall, MoE methods appear as a capable and novel tool to addressing problems of heterogeneity for direct-on-filter quantitative analysis.
{"title":"Applying Finite Mixture Models to Quantify Respirable Dust Mass in Coal and Metal-Nonmetal Mines Using Fourier Transform Infrared Spectroscopy.","authors":"Andrew T Weakley, David A Parks, Arthur L Miller","doi":"10.1177/00037028241296158","DOIUrl":"https://doi.org/10.1177/00037028241296158","url":null,"abstract":"<p><p>Respirable dust mass is a prevalent occupational health hazard to the mining workforce. Mineral matrices observed in the mine environment are complex, time varying, and heterogeneous. This poses a challenge to assessing dust exposure using Fourier transform infrared (FT-IR) spectrometry as calibrations for constituent dust species (e.g., crystalline silica) have historically been trained using homogeneous standards or simple mixtures therein. Investigations have considered direct-on-filter analysis, which collects FT-IR spectra directly from sampling filters for calibration, as an alternative. Direct-on-filter analysis using a partial least squares (PLS) method has gained particular interest recently due to the potential to rapidly quantify multiple species from a single filter at the mine site. By design, heterogeneity, and its presumed impact on method accuracy, cannot be addressed in the laboratory when using a direct-on-filter approach motivating the need for more advanced calibration approaches. When heterogeneity is present, mixture of experts (MoE) finite mixture models offer a promising and novel alternative to PLS direct-on-filter analysis as MoE incorporates cluster discovery, regression, and outlier identification into model fitting. Three MoE models of increasing complexity were tasked with determining respirable dust mass in 243 field samples from thirteen active coal, limestone, sandstone, and silver mines. All MoE models, including those using only \"expert\" spectroscopic predictors or a combination of expert and categorical \"gate\" variables (e.g., mine type), significantly outperform PLS in terms of accuracy (α = 0.05). Decomposing bias by mine type shows that accuracy generally improves across all types considered when MoE models are not overfitted. The MoE method's effectiveness was linked to its ability to endogenously classify outliers as well as possibly to the use of an additional cluster model for mass predictions. Overall, MoE methods appear as a capable and novel tool to addressing problems of heterogeneity for direct-on-filter quantitative analysis.</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241296158"},"PeriodicalIF":2.2,"publicationDate":"2024-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142778768","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-05DOI: 10.1177/00037028241297716
Ece Miser-Salihoğlu, Hasan İlhan, Uğur Tamer, Sevgi Akaydin
Raman spectroscopy is a chemical process that utilizes the interaction between light and matter to get significant insights into the structure or characteristics of matter. Raman spectroscopy techniques, such as quantitative evaluation, early diagnostic capabilities, and elucidation of the spectral properties of tissues, are excellent candidates for use in research. In cancer, changes in genes and proteins expressed by related genes are associated with a poor prognosis and aggressive tumor characteristics. Due to modifications and regulatory steps in protein translation, the results of the messenger RNA (mRNA) expression of genes may not correctly reflect the results of protein expression. For this reason, the mRNA and protein expressions of genes are studied in parallel in molecular studies on cancer. In our study, the breast cancer gene type 1 (BRCA1) gene, which is frequently studied in breast cancer and is relatively more difficult to measure by traditional methods due to its high molecular weight, was selected, and protein quantification was performed in tissue samples by Raman spectroscopy. With Raman spectroscopy, it is possible to obtain rapid and precise quantitative results even with a small amount of sample, so it is quite advantageous compared to traditional methods. In our study, we performed surface-enhanced Raman spectroscopy (SERS) to analyze the quantitative protein amount. SERS is a highly sensitive method for detecting compounds at low concentrations. For this purpose, magnetic nanoparticles modified with protein antibodies were used, and the target protein was withdrawn from the complex environment and transferred to an appropriate buffer environment. The calibration curve for BRCA1, which plots Raman intensity against concentration, was derived by calculating the average response reading from duplicate assays conducted under identical conditions. The BRCA1 protein levels of cells were determined from the regression curve of the BRCA1 protein. The relation between the concentration of BRCA1 protein and SERS spectrum intensity was determined to be logarithmic in the range of 300 µg·mL-1 to 292 ng·mL-1 (R2 = 0.9928, limit of detection = 10.41 µg·mL-1, and limit of quantitation = 31.24 µg·mL-1).
{"title":"Evaluation of Breast Cancer Gene Type 1 (BRCA1) Protein Levels in Cancer Tissue Using Surface-Enhanced Raman Spectroscopy.","authors":"Ece Miser-Salihoğlu, Hasan İlhan, Uğur Tamer, Sevgi Akaydin","doi":"10.1177/00037028241297716","DOIUrl":"https://doi.org/10.1177/00037028241297716","url":null,"abstract":"<p><p>Raman spectroscopy is a chemical process that utilizes the interaction between light and matter to get significant insights into the structure or characteristics of matter. Raman spectroscopy techniques, such as quantitative evaluation, early diagnostic capabilities, and elucidation of the spectral properties of tissues, are excellent candidates for use in research. In cancer, changes in genes and proteins expressed by related genes are associated with a poor prognosis and aggressive tumor characteristics. Due to modifications and regulatory steps in protein translation, the results of the messenger RNA (mRNA) expression of genes may not correctly reflect the results of protein expression. For this reason, the mRNA and protein expressions of genes are studied in parallel in molecular studies on cancer. In our study, the breast cancer gene type 1 (BRCA1) gene, which is frequently studied in breast cancer and is relatively more difficult to measure by traditional methods due to its high molecular weight, was selected, and protein quantification was performed in tissue samples by Raman spectroscopy. With Raman spectroscopy, it is possible to obtain rapid and precise quantitative results even with a small amount of sample, so it is quite advantageous compared to traditional methods. In our study, we performed surface-enhanced Raman spectroscopy (SERS) to analyze the quantitative protein amount. SERS is a highly sensitive method for detecting compounds at low concentrations. For this purpose, magnetic nanoparticles modified with protein antibodies were used, and the target protein was withdrawn from the complex environment and transferred to an appropriate buffer environment. The calibration curve for BRCA1, which plots Raman intensity against concentration, was derived by calculating the average response reading from duplicate assays conducted under identical conditions. The BRCA1 protein levels of cells were determined from the regression curve of the BRCA1 protein. The relation between the concentration of BRCA1 protein and SERS spectrum intensity was determined to be logarithmic in the range of 300 µg·mL<sup>-1</sup> to 292 ng·mL<sup>-1</sup> (<i>R</i><sup>2</sup> = 0.9928, limit of detection = 10.41 µg·mL<sup>-1</sup>, and limit of quantitation = 31.24 µg·mL<sup>-1</sup>).</p>","PeriodicalId":8253,"journal":{"name":"Applied Spectroscopy","volume":" ","pages":"37028241297716"},"PeriodicalIF":2.2,"publicationDate":"2024-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142783911","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}