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Discrimination Between Competing Model Structures of Biological Systems in the Presence of Population Heterogeneity 种群异质性存在下生物系统竞争模式结构的区别
Pub Date : 1900-01-01 DOI: 10.1109/LLS.2016.2644645
Marc Martin-Casas, A. Mesbah
Computational models are useful for quantitative elucidation of the dynamical behavior of biological systems. Oftentimes, several competing models (i.e., hypotheses) are proposed to describe the underlying molecular mechanisms of a biological system. Selecting the most representative model is imperative for obtaining meaningful quantitative insights into the dynamics of the system of interest. However, the discrimination between competing models poses a significant challenge due to heterogeneity that is intrinsic to biological systems. This letter demonstrates the effectiveness of a probabilistic approach to optimal experiment design for model discrimination in the presence of time-invariant cell-to-cell differences within a cell population. The JAK2/STAT5 signaling pathway, which is involved in proliferation and differentiation of hematopoietic stem cells, is used as a case study.
计算模型对于定量阐明生物系统的动力学行为是有用的。通常,提出几个相互竞争的模型(即假设)来描述生物系统的潜在分子机制。选择最具代表性的模型对于获得对感兴趣的系统动态的有意义的定量见解至关重要。然而,由于生物系统固有的异质性,竞争模型之间的歧视构成了重大挑战。这封信证明了在细胞群体中存在时不变细胞间差异的情况下,概率方法对模型判别的最佳实验设计的有效性。JAK2/STAT5信号通路,参与造血干细胞的增殖和分化,作为一个案例研究。
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引用次数: 7
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IEEE life sciences letters
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