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Biocatalysis in continuous-flow mode: A case-study in the enzymatic kinetic resolution of secondary alcohols via acylation and deacylation reactions mediated by Novozym 435® 连续流动模式下的生物催化:Novozym 435®介导的酰化和去酰化反应对仲醇酶解动力学的一个案例研究
Pub Date : 2017-01-01 DOI: 10.1515/boca-2017-0003
J. Thomas, Martha Daniela Burich, P. Bandeira, Alfredo Ricardo Marques de Oliveira, Leandro Piovan
Abstract Enzymatic kinetic resolution reactions are a well-established way to achieve optically active compounds. When enzymatic reactions are combined to continuous-flow methodologies, other benefits are added, including reproducibility, optimized energy use, minimized waste generation, among others. In this context, we herein report a case study involving lipase-mediated transesterification by acylation and deacylation reactions of secondary alcohols/esters in batch and continuous-flow modes. Acylation reactions were performed with high values of enantiomeric excess (72 up to >99%) and enantioselectivity (E > 200) for both batch and continuous-flow modes. On the other hand, for deacylation reactions using n-butanol as nucleophile, enatiomeric excess ranged between 38 to >99% and E from 6 to >200 were observed for batch mode. For deacylation reactions in continuous-flow mode, results were disappointing, as in some cases, very low or no conversion was observed. Enantiomeric excess ranged from 16 to >99% and enantioselectivity from 5 to >200 were observed. In terms of productivity, continuous-flow mode reactions were superior in both strategies (acylation: r from 1.1 up to 18.1-fold higher, deacylation: 2.8 up to 7.4- fold higher in continuous-flow than in batch mode).
酶动力学分解反应是一种公认的获得光学活性化合物的方法。当酶促反应与连续流方法相结合时,还增加了其他好处,包括可重复性,优化能源使用,最大限度地减少废物产生等。在这种情况下,我们在此报告一个案例研究涉及脂肪酶介导的酰基化和去酰化反应的仲醇/酯在间歇和连续流动模式。在间歇和连续流动模式下,酰化反应的对映体过量(72 - >99%)和对映体选择性(E > 200)值都很高。另一方面,对于以正丁醇为亲核试剂的去酰化反应,在批处理模式下,对映体过量范围在38 ~ >99%之间,E在6 ~ >200之间。对于连续流动模式下的去酰化反应,结果令人失望,因为在某些情况下,观察到非常低或没有转化。对映体过量范围为16 ~ >99%,对映体选择性范围为5 ~ >200。在生产效率方面,连续流动模式的反应在两种策略中都优于连续流动模式(在连续流动模式下,酰化:r从1.1到18.1倍高,去酰化:2.8到7.4倍,比批处理模式高)。
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引用次数: 11
Structure and function of Aspergillus niger laccase McoG 黑曲霉漆酶McoG的结构与功能
Pub Date : 2017-01-01 DOI: 10.1515/boca-2017-0001
M. Ferraroni, A. Westphal, M. Borsari, J. A. Tamayo-Ramos, F. Briganti, L. Graaff, W. Berkel
Abstract The ascomycete Aspergillus niger produces several multicopper oxidases, but their biocatalytic properties remain largely unknown. Elucidation of the crystal structure of A. niger laccase McoG at 1.7 Å resolution revealed that the C-terminal tail of this glycoprotein blocks the T3 solvent channel and that a peroxide ion bridges the two T3 copper atoms. Remarkably, McoG contains a histidine (His253) instead of the common aspartate or glutamate expected to be involved in catalytic proton transfer with phenolic compounds. The crystal structure of H253D at 1.5 Å resolution resembles the wild type structure. McoG and the H253D, H253A and H253N variants have similar activities with 2,2’-azino-bis(3- ethylbenzothiazoline-6-sulphonic acid or N,N-dimethyl-p-phenylenediamine sulphate. However, the activities of H253A and H253N with 2-amino-4-methylphenol and 2-amino-4-methoxyphenol are strongly reduced compared to that of wild type. The redox potentials and electron transfer rates (ks) of wild type and variants were determined (McoG wt E°’ is +453 mV), and especially the reduced ks values of H253A and H253N show strong correlation with their low activity on phenolic compounds. In summary, our results suggest that the His253 adaptation of McoG can be beneficial for the conversion of phenolic compounds.
摘要子囊菌黑曲霉产生多种铜氧化酶,但其生物催化性质仍不清楚。在1.7 Å分辨率下对a . niger漆酶McoG的晶体结构进行了解析,发现该糖蛋白的c端尾部阻断了T3溶剂通道,并且一个过氧化物离子桥接了两个T3铜原子。值得注意的是,McoG含有组氨酸(His253),而不是常见的天冬氨酸或谷氨酸,它们被认为参与了与酚类化合物的催化质子转移。在1.5 Å分辨率下,H253D的晶体结构类似于野生型结构。McoG和H253D、H253A和H253N变体对2,2 ' -氮基-双(3-乙基苯并噻唑-6-磺酸或N,N-二甲基-对苯二胺硫酸盐具有相似的活性。但与野生型相比,H253A和H253N对2-氨基-4-甲基苯酚和2-氨基-4-甲氧基苯酚的活性明显降低。测定了野生型和变异型的氧化还原电位和电子传递速率(ks) (McoG wt E°′为+453 mV),特别是H253A和H253N的还原k值与它们对酚类化合物的低活性有很强的相关性。综上所述,我们的研究结果表明,His253对McoG的适应有利于酚类化合物的转化。
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引用次数: 19
Nanobiocatalysis: Nanostructured materials – a minireview 纳米生物催化:纳米结构材料综述
Pub Date : 2016-06-03 DOI: 10.1515/boca-2016-0001
Magdalena de Jesús Rostro-Alanis, Elena I. Mancera-Andrade, Mayra Beatriz Gómez Patiño, D. Arrieta-Báez, B. Cardenas, S. Martínez-Chapa, Roberto Parra Saldivar
Abstract The field of nanobiocatalysis has experienced a rapid growth due to recent advances in nanotechnology. However, biocatalytic processes are often limited by the lack of stability of the enzymes and their short lifetime. Therefore, immobilization is key to the successful implementation of industrial processes based on enzymes. Immobilization of enzymes on functionalized nanostructured materials could give higher stability to nanobiocatalysts while maintaining free enzyme activity and easy recyclability under various conditions. This review will discuss recent developments in nanobiocatalysis to improve the stability of the enzyme using various nanostructured materials such as mesoporous materials, nanofibers, nanoparticles, nanotubes, and individual nanoparticles enzymes. Also, this review summarizes the recent evolution of nanostructured biocatalysts with an emphasis on those formed with polymers. Based on the synthetic procedures used, established methods fall into two important categories: “grafting onto” and “grafting from”. The fundamentals of each method in enhancing enzyme stability and the use of these new nanobiocatalysts as tools for different applications in different areas are discussed.
由于纳米技术的进步,纳米生物催化领域经历了快速的发展。然而,生物催化过程往往受到酶缺乏稳定性和寿命短的限制。因此,固定化是成功实施基于酶的工业过程的关键。将酶固定在功能化的纳米结构材料上,可以提高纳米生物催化剂的稳定性,同时在各种条件下保持酶的游离活性和易于回收利用。本文将讨论纳米生物催化的最新进展,以提高酶的稳定性,使用各种纳米结构材料,如介孔材料、纳米纤维、纳米颗粒、纳米管和单个纳米颗粒酶。此外,本文综述了纳米结构生物催化剂的最新进展,重点介绍了聚合物形成的纳米结构生物催化剂。根据所使用的合成程序,现有的方法分为两大类:“嫁接到”和“嫁接自”。讨论了提高酶稳定性的每种方法的基本原理以及这些新型纳米生物催化剂作为工具在不同领域的不同应用。
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引用次数: 40
Medium-engineering: a useful tool for modulating lipase activity and selectivity 介质工程:调节脂肪酶活性和选择性的有用工具
Pub Date : 2016-04-07 DOI: 10.1515/boca-2015-0013
E. Castillo, L. Casas-Godoy, G. Sandoval
Abstract The design of a specific reaction medium capable to enhance activity, stability, and productivity of biocatalysts has been a recurring topic of study during the last three decades. The remarkable properties and valuable applications of enzymes, especially lipases, have inspiried different strategies for improving their performance in near-anhydrous media. As lipases are the most frequently used enzymes in organic synthesis, understanding the influence of reaction media on their activity and selectivity is crucial. In this paper, we review the key features of lipases and demonstrate how medium-engineering is a useful tool to modulate the activity and selectivity of lipase-catalyzed reactions.
在过去的三十年里,设计一种能够提高生物催化剂活性、稳定性和生产率的特定反应介质一直是一个反复出现的研究课题。酶,特别是脂肪酶的显著性质和有价值的应用,激发了不同的策略来提高它们在近无水介质中的性能。脂肪酶是有机合成中最常用的酶,了解反应介质对其活性和选择性的影响至关重要。在本文中,我们回顾了脂肪酶的主要特征,并证明了介质工程是如何调节脂肪酶催化反应的活性和选择性的有用工具。
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引用次数: 19
Cross-linked enzyme aggregates (CLEA) in enzyme improvement – a review 交联酶聚集体(CLEA)在酶改善中的研究进展
Pub Date : 2016-02-25 DOI: 10.1515/boca-2015-0012
Susana Velasco-Lozano, F. López‐Gallego, J. C. Mateos-Díaz, E. Favela‐Torres
Abstract Structural and functional catalytic characteristics of cross-linked enzyme aggregates (CLEA) are reviewed. Firstly, advantages of enzyme immobilization and existing types of immobilization are described. Then, a wide description of the factors that modify CLEA activity, selectivity and stability is presented. Nowadays CLEA offers an economic, simple and easy tool to reuse biocatalysts, improving their catalytic properties and stability. This immobilization methodology has been widely and satisfactorily tested with a great variety of enzymes and has demonstrated its potential as a future tool to optimize biocatalytic processes.
摘要综述了交联酶聚集体(CLEA)的结构和功能催化特性。首先介绍了酶固定化的优点和现有的固定化方法。然后,对影响CLEA活性、选择性和稳定性的因素进行了广泛的描述。如今,CLEA提供了一种经济、简单和容易的工具来重复使用生物催化剂,提高了它们的催化性能和稳定性。这种固定化方法已经在多种酶上得到了广泛而令人满意的测试,并证明了它作为优化生物催化过程的未来工具的潜力。
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引用次数: 93
Enzymatic microreactors in biocatalysis: history, features, and future perspectives 生物催化中的酶微反应器:历史、特点和未来展望
Pub Date : 2016-02-05 DOI: 10.1515/boca-2015-0008
E. Laurenti, Ardson dos Santos Vianna Jr.
Abstract Microfluidic reaction devices are a very promising technology for chemical and biochemical processes. In microreactors, the micro dimensions, coupled with a high surface area/volume ratio, permit rapid heat exchange and mass transfer, resulting in higher reaction yields and reaction rates than in conventional reactors. Moreover, the lower energy consumption and easier separation of products permit these systems to have a lower environmental impact compared to macroscale, conventional reactors. Due to these benefits, the use of microreactors is increasing in the biocatalysis field, both by using enzymes in solution and their immobilized counterparts. Following an introduction to the most common applications of microreactors in chemical processes, a broad overview will be given of the latest applications in biocatalytic processes performed in microreactors with free or immobilized enzymes. In particular, attention is given to the nature of the materials used as a support for the enzymes and the strategies employed for their immobilization. Mathematical and engineering aspects concerning fluid dynamics in microreactors were also taken into account as fundamental factors for the optimization of these systems.
微流控反应装置是一种非常有前途的化学和生化工艺技术。在微反应器中,微尺寸加上高表面积/体积比,允许快速的热交换和传质,从而产生比传统反应器更高的反应收率和反应速率。此外,与大型常规反应器相比,较低的能耗和更容易分离的产品使这些系统对环境的影响更小。由于这些优点,微反应器在生物催化领域的应用越来越多,包括在溶液中使用酶和固定化酶。在介绍了微反应器在化学过程中最常见的应用之后,将广泛概述在微反应器中使用游离酶或固定化酶进行的生物催化过程中的最新应用。特别要注意的是,作为酶的支持材料的性质和用于固定它们的策略。有关微反应器流体动力学的数学和工程方面也被考虑为优化这些系统的基本因素。
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引用次数: 34
Computational Tools Applied to Enzyme Design − a review 计算工具在酶设计中的应用综述
Pub Date : 2016-02-02 DOI: 10.1515/boca-2015-0009
Fernando García-Guevara, M. Avelar, M. Ayala, L. Segovia
Abstract The protein design toolbox has been greatly improved by the addition of enzyme computational simulations. Not only do they warrant a more ambitious and thorough exploration of sequence space, but a much higher number of variants and protein-ligand systems can be analyzed in silico compared to experimental engineering methods. Modern computational tools are being used to redesign and also for de novo generation of enzymes. These approaches are contingent on a deep understanding of the reaction mechanism and the enzyme’s three-dimensional structure coordinates, but the wealth of information produced by these analyses leads to greatly improved or even totally new types of catalysis.
随着酶计算模拟的加入,蛋白质设计工具箱得到了极大的改进。它们不仅保证了对序列空间的更雄心勃勃和更彻底的探索,而且与实验工程方法相比,可以在计算机上分析更多的变体和蛋白质配体系统。现代计算工具被用于重新设计和重新生成酶。这些方法取决于对反应机理和酶的三维结构坐标的深刻理解,但这些分析产生的丰富信息将大大改进甚至是全新的催化类型。
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引用次数: 12
Bioreduction of fluoroacetophenone derivatives by endophytic fungi isolated from the marine red alga Bostrychia radicans 从海洋红藻中分离的内生真菌生物还原氟苯乙酮衍生物
Pub Date : 2016-01-21 DOI: 10.1515/boca-2015-0011
Ana Maria Mouad, A. L. L. de Oliveira, H. Debonsi, A. Porto
Abstract Four endophytic fungi isolated from the marine red alga Bostrychia radicans identified as Botryosphaeria sp. CBMAI 1197, Eutypella sp. CBMAI 1196, Hidropisphaera sp. CBMAI 1194 and Xylaria sp. CBMAI 1195 catalyzed the asymmetric bioreduction of fluoroacetophenone derivatives 1-3 to the corresponding fluorophenylalcohols 1a-3a. In the reduction reactions of 2,2,2-trifluoro-1-phenylethanone 1, all the marine fungi produced exclusively the (S)-2,2,2-trifluoro- 1-phenylethanol 1a with > 99% ee. The fungus Botryosphaeria sp. CBMAI 1197 exhibited the best enzymatic potential, leading to the highest conversion values (up to > 99%). The biocatalyst Botryosphaeria sp. CBMAI 1197 also presented active enzymes in reactions with the substrates 1-(2-(trifluoromethyl)phenyl) ethanone (2) and 1-(2,4,5-trifluorophenyl)ethanone (3), producing the respective chiral alcohols S-2a and R-3a with > 99% ee. Additionally, the fungus Hidropisphaera sp. CBMAI 1194 yielded 100% of conversion of the ketone 3 to the corresponding S-alcohol 3a, with 53% ee.
摘要从海洋红藻Bostrychia radicans中分离得到4种内生真菌,鉴定为Botryosphaeria sp. CBMAI 1197、Eutypella sp. CBMAI 1196、Hidropisphaera sp. CBMAI 1194和Xylaria sp. CBMAI 1195,催化氟苯乙酮衍生物1-3生成相应的氟苯醇1a-3a。在2,2,2-三氟-1-苯乙烷1的还原反应中,所有的海洋真菌都只产生ee > 99%的(S)-2,2,2-三氟-1-苯乙醇1a。真菌Botryosphaeria sp. CBMAI 1197表现出最好的酶促潜力,转化率最高(> 99%)。生物催化剂Botryosphaeria sp. CBMAI 1197在与底物1-(2-(三氟甲基)苯基)乙烷(2)和1-(2,4,5-三氟苯基)乙烷(3)的反应中也表现出活性酶,分别生成ee > 99%的手性醇S-2a和R-3a。此外,真菌Hidropisphaera sp. CBMAI 1194将酮3转化为相应的s -醇3a的转化率为100%,ee为53%。
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引用次数: 7
Biosensors based on oxidative enzymes for detection of environmental pollutants 基于氧化酶的环境污染物检测生物传感器
Pub Date : 2016-01-21 DOI: 10.1515/boca-2015-0010
G. Rebollar-Pérez, J. Campos-Terán, N. Ornelas-Soto, A. Méndez-Albores, E. Torres
Abstract In recent years, the continuous and accumulative discharge of toxic and contaminating compounds to the environment makes necessary to propose precise and quick methods for their detection and quantitation. Especially when one considers that the environmental impact of some of these emerging contaminants has not been clearly determined. Enzyme-based biosensors are an interesting alternative when inspecting different pollutants present in the environment in a quick, efficient, automatized, and economic way. Oxidative enzymes such as peroxidases and polyphenol oxidases (laccases and tyrosinases) are versatile and highly functional enzymes used for analyte recognition. Therefore, these enzymes are considered attractive and interesting biomolecules to act as recognition elements in biosensors. In this regard, detection of pollutants such as pesticides, phenols, heavy metals, and pharmaceutical compounds by using oxidative enzymes as recognition elements in biosensors is a versatile field, and it is the focus of the present review.
摘要近年来,有毒污染物质不断向环境中排放,有必要提出精确、快速的检测和定量方法。特别是当人们考虑到这些新出现的污染物对环境的影响尚未明确确定时。当以快速、高效、自动化和经济的方式检测环境中存在的不同污染物时,基于酶的生物传感器是一种有趣的选择。氧化酶如过氧化物酶和多酚氧化酶(漆酶和酪氨酸酶)是用于分析物识别的多功能和高功能酶。因此,这些酶被认为是有吸引力和有趣的生物分子,可以作为生物传感器的识别元件。在这方面,利用氧化酶作为识别元件在生物传感器中检测农药、酚类、重金属、药物化合物等污染物是一个广泛的领域,也是本综述的重点。
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引用次数: 26
Biocatalytic synthesis of (S)-Practolol, a selective β-blocker 选择性β阻断剂(S)-Practolol的生物催化合成
Pub Date : 2016-01-20 DOI: 10.1515/boca-2015-0006
Sachin B. Mulik, Saptarshi Ghosh, Jayeeta Bhaumik, U. Banerjee
Abstract The present study describes an efficient chemoenzymatic synthesis of enantiopure (S)-Practolol, a selective β-adrenergic receptor blocker. Prior to the synthesis of the target, a synthetic protocol for (RS)-N-4-(3-chloro-2-hydroxypropoxy)phenylacetamide, an essential precursor, was developed. Various commercial lipases were screened for the kinetic resolution of (RS)- N-4-(3-chloro-2-hydroxypropoxy)phenylacetamide using toluene as solvent and vinyl acetate as an acyl donor. Among various lipases screened, Pseudomonas cepacia sol-gel AK showed the highest enantioselectivity (96% enantiomeric excess with 50% conversion), affording (S)-1-(4-acetamidophenoxy)-3-chloropropan-2-yl acetate. Optimization of the reaction parameters was carried out in order to find the best-suited conditions for the biocatalysis. Furthermore, the enantiopure intermediate was hydrolyzed and the resulting product was reacted with isopropylamine to afford (S)-Practolol. This biocatalytic procedure depicts a green technology for the synthesis of (S)-Practolol with better yield and enantiomeric excess.
摘要本研究描述了一种高效的化学酶合成对映纯(S)-Practolol,一种选择性β-肾上腺素受体阻滞剂。在合成目标之前,开发了一种重要前体(RS)- n -4-(3-氯-2-羟基丙氧基)苯乙酰胺的合成方案。以甲苯为溶剂,醋酸乙烯为酰基给体,筛选了多种商用脂肪酶对(RS)- N-4-(3-氯-2-羟基丙氧基)苯乙酰胺的动力学分解。在筛选的各种脂肪酶中,洋葱假单胞菌溶胶-凝胶AK表现出最高的对映体选择性(96%的对映体过剩,50%的转化率),提供(S)-1-(4-乙酰氨基苯氧基)-3-氯丙-2-乙酸酯。对反应参数进行了优化,以寻找最适宜的生物催化条件。再将对映纯中间体水解,产物与异丙胺反应生成(S)-普practolol。这一生物催化过程描述了一种绿色合成(S)-Practolol的技术,具有较高的产率和对映体过量。
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引用次数: 2
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