Pub Date : 2025-11-03eCollection Date: 2025-01-01DOI: 10.3762/bjoc.21.180
Artur M Schweidtmann, Philippe Schwaller
{"title":"Adaptive experimentation and optimization in organic chemistry.","authors":"Artur M Schweidtmann, Philippe Schwaller","doi":"10.3762/bjoc.21.180","DOIUrl":"10.3762/bjoc.21.180","url":null,"abstract":"","PeriodicalId":8756,"journal":{"name":"Beilstein Journal of Organic Chemistry","volume":"21 ","pages":"2367-2368"},"PeriodicalIF":2.1,"publicationDate":"2025-11-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12599388/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145493770","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-03eCollection Date: 2025-01-01DOI: 10.3762/bjoc.21.181
Guang-Wei Zhang, Yong Zhang, Le Shi, Chuang Gao, Hong-Yu Li, Lei Xue
To our knowledge, this work represents one of the earliest comparative studies on the anion-binding behaviors of carbazole-based structural analogs, demonstrating that a flexible macrocycle markedly improves iodide binding affinity via an induced-fit mechanism. The flexible analog PBG exhibits a 22.78-fold higher fluorescence quenching efficiency upon iodide binding compared to the rigid WDG (KPBG /KWDG = 22.78), demonstrating its potential as a highly sensitive optical probe and offering a novel strategy for engineering dynamic supramolecular receptors. Two carbazole-based macrocyclic probes, PBG (flexible benzene ring) and WDG (rigid fluorene backbone), were synthesized via Friedel-Crafts reactions. Their iodide (I-) recognition properties were systematically explored using 1H NMR, UV-vis absorption, and fluorescence spectroscopy. Quantitative analysis via the Benesi-Hildebrand equation and nonlinear fitting demonstrated that flexible PBG achieves superior I- binding (KPBG = 1.387 × 105 M-1) through induced-fit conformational adjustments, whereas rigid WDG (KWDG = 6.089 × 103 M-1) is constrained by preorganized cavity geometry, adhering to a conformational selection mechanism. This work elucidates the synergistic interplay between conformational dynamics and localized structural adaptations governing anion recognition. The findings advance the rational design of tunable, high-affinity anion receptors and deepen the understanding of conformational regulation in supramolecular systems.
{"title":"Conformational effects on iodide binding: a comparative study of flexible and rigid carbazole macrocyclic analogs.","authors":"Guang-Wei Zhang, Yong Zhang, Le Shi, Chuang Gao, Hong-Yu Li, Lei Xue","doi":"10.3762/bjoc.21.181","DOIUrl":"10.3762/bjoc.21.181","url":null,"abstract":"<p><p>To our knowledge, this work represents one of the earliest comparative studies on the anion-binding behaviors of carbazole-based structural analogs, demonstrating that a flexible macrocycle markedly improves iodide binding affinity via an induced-fit mechanism. The flexible analog <b>PBG</b> exhibits a 22.78-fold higher fluorescence quenching efficiency upon iodide binding compared to the rigid <b>WDG</b> (<i>K</i> <b><sub>PBG</sub></b> /<i>K</i> <b><sub>WDG</sub></b> = 22.78), demonstrating its potential as a highly sensitive optical probe and offering a novel strategy for engineering dynamic supramolecular receptors. Two carbazole-based macrocyclic probes, <b>PBG</b> (flexible benzene ring) and <b>WDG</b> (rigid fluorene backbone), were synthesized via Friedel-Crafts reactions. Their iodide (I<sup>-</sup>) recognition properties were systematically explored using <sup>1</sup>H NMR, UV-vis absorption, and fluorescence spectroscopy. Quantitative analysis via the Benesi-Hildebrand equation and nonlinear fitting demonstrated that flexible <b>PBG</b> achieves superior I<sup>-</sup> binding (<i>K</i> <b><sub>PBG</sub></b> = 1.387 × 10<sup>5</sup> M<sup>-1</sup>) through induced-fit conformational adjustments, whereas rigid <b>WDG</b> (<i>K</i> <b><sub>WDG</sub></b> = 6.089 × 10<sup>3</sup> M<sup>-1</sup>) is constrained by preorganized cavity geometry, adhering to a conformational selection mechanism. This work elucidates the synergistic interplay between conformational dynamics and localized structural adaptations governing anion recognition. The findings advance the rational design of tunable, high-affinity anion receptors and deepen the understanding of conformational regulation in supramolecular systems.</p>","PeriodicalId":8756,"journal":{"name":"Beilstein Journal of Organic Chemistry","volume":"21 ","pages":"2369-2375"},"PeriodicalIF":2.1,"publicationDate":"2025-11-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12599402/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145494000","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Integrating molecular photoswitches into rotaxanes offers unique opportunities for precise control over their structural, dynamic, and functional properties. By harnessing light as a non-invasive stimulus with high spatial and temporal resolution, these photoswitches allow for the modulation of the rotaxanes' intra- and intermolecular interactions, optoelectronic properties, and shuttling dynamics. In this review, we discuss key examples of photoswitchable rotaxanes, organized according to the position of the photoswitch, either embedded in the axle or incorporated into the macrocycle. We examine the major classes of photoswitches used, including their switching mechanisms and the resulting influence on rotaxane operation. Due to their architectural versatility and precise light control, photoswitchable rotaxanes hold promise for a broad range of applications, including light-responsive molecular machines, smart materials, and biofunctional systems. However, emerging applications increasingly require rethinking and developing new structural designs that incorporate more efficient and advanced photoswitches to fully realize their potential.
{"title":"Rotaxanes with integrated photoswitches: design principles, functional behavior, and emerging applications.","authors":"Jullyane Emi Matsushima, Khushbu, Zuliah Abdulsalam, Udyogi Navodya Kulathilaka Conthagamage, Víctor García-López","doi":"10.3762/bjoc.21.179","DOIUrl":"10.3762/bjoc.21.179","url":null,"abstract":"<p><p>Integrating molecular photoswitches into rotaxanes offers unique opportunities for precise control over their structural, dynamic, and functional properties. By harnessing light as a non-invasive stimulus with high spatial and temporal resolution, these photoswitches allow for the modulation of the rotaxanes' intra- and intermolecular interactions, optoelectronic properties, and shuttling dynamics. In this review, we discuss key examples of photoswitchable rotaxanes, organized according to the position of the photoswitch, either embedded in the axle or incorporated into the macrocycle. We examine the major classes of photoswitches used, including their switching mechanisms and the resulting influence on rotaxane operation. Due to their architectural versatility and precise light control, photoswitchable rotaxanes hold promise for a broad range of applications, including light-responsive molecular machines, smart materials, and biofunctional systems. However, emerging applications increasingly require rethinking and developing new structural designs that incorporate more efficient and advanced photoswitches to fully realize their potential.</p>","PeriodicalId":8756,"journal":{"name":"Beilstein Journal of Organic Chemistry","volume":"21 ","pages":"2345-2366"},"PeriodicalIF":2.1,"publicationDate":"2025-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12581010/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145443864","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-30eCollection Date: 2025-01-01DOI: 10.3762/bjoc.21.177
Peng-Xi Luo, Jin-Xuan Yang, Shao-Min Fu, Bo Liu
In recent years, the Norrish-Yang cyclization and related photoredox reactions of dicarbonyls have been extensively utilized in natural product synthesis. This review summarizes the latest advancements in these reactions for constructing terpenoids, alkaloids, and antibiotics. Through Norrish-Yang cyclization, dicarbonyls (e.g., 1,2-diketones and α-keto amides) can efficiently construct sterically hindered ring structures, which can further undergo ring-opening or rearrangement reaction to assemble complex molecular frameworks. Additionally, quinone photoredox reactions involving single-electron transfer (SET) processes provide novel strategies for the stereoselective synthesis of useful structures such as spiroketals. This review, drawing on examples from recently reported natural product syntheses, elaborates on reaction mechanisms, factors governing regioselectivity and stereoselectivity, and the impact of substrate structures on reaction pathways. These reactions not only serve as robust tools for the streamlined synthesis of natural products but also establish a solid foundation for subsequent pharmaceutical investigations.
{"title":"Recent advances in Norrish-Yang cyclization and dicarbonyl photoredox reactions for natural product synthesis.","authors":"Peng-Xi Luo, Jin-Xuan Yang, Shao-Min Fu, Bo Liu","doi":"10.3762/bjoc.21.177","DOIUrl":"10.3762/bjoc.21.177","url":null,"abstract":"<p><p>In recent years, the Norrish-Yang cyclization and related photoredox reactions of dicarbonyls have been extensively utilized in natural product synthesis. This review summarizes the latest advancements in these reactions for constructing terpenoids, alkaloids, and antibiotics. Through Norrish-Yang cyclization, dicarbonyls (e.g., 1,2-diketones and α-keto amides) can efficiently construct sterically hindered ring structures, which can further undergo ring-opening or rearrangement reaction to assemble complex molecular frameworks. Additionally, quinone photoredox reactions involving single-electron transfer (SET) processes provide novel strategies for the stereoselective synthesis of useful structures such as spiroketals. This review, drawing on examples from recently reported natural product syntheses, elaborates on reaction mechanisms, factors governing regioselectivity and stereoselectivity, and the impact of substrate structures on reaction pathways. These reactions not only serve as robust tools for the streamlined synthesis of natural products but also establish a solid foundation for subsequent pharmaceutical investigations.</p>","PeriodicalId":8756,"journal":{"name":"Beilstein Journal of Organic Chemistry","volume":"21 ","pages":"2315-2333"},"PeriodicalIF":2.1,"publicationDate":"2025-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12581001/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145443861","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-30eCollection Date: 2025-01-01DOI: 10.3762/bjoc.21.178
Reem Al-Ahmad, Mingji Dai
In this review, we summarize and compare four total syntheses of complanadine A, a complex and pseudo-dimeric lycopodium alkaloid with promising neurotrophic activity and potential for pain management. These four total syntheses are from the groups of Siegel, Sarpong, Tsukano, and Dai. Each of the four total syntheses contains innovative strategies and creative tactics, reflecting how emerging synthetic capabilities and concepts can positively impact natural product total synthesis.
{"title":"Comparative analysis of complanadine A total syntheses.","authors":"Reem Al-Ahmad, Mingji Dai","doi":"10.3762/bjoc.21.178","DOIUrl":"10.3762/bjoc.21.178","url":null,"abstract":"<p><p>In this review, we summarize and compare four total syntheses of complanadine A, a complex and pseudo-dimeric <i>lycopodium</i> alkaloid with promising neurotrophic activity and potential for pain management. These four total syntheses are from the groups of Siegel, Sarpong, Tsukano, and Dai. Each of the four total syntheses contains innovative strategies and creative tactics, reflecting how emerging synthetic capabilities and concepts can positively impact natural product total synthesis.</p>","PeriodicalId":8756,"journal":{"name":"Beilstein Journal of Organic Chemistry","volume":"21 ","pages":"2334-2344"},"PeriodicalIF":2.1,"publicationDate":"2025-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12581007/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145443781","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-29eCollection Date: 2025-01-01DOI: 10.3762/bjoc.21.176
Suvenika Perera, Peter Y Zavalij, Lyle Isaacs
Contamination of water bodies by micropollutants including industrial dyes is a worldwide health and environmental concern. We report the design, synthesis, and characterization of a series of methylene-bridged glycoluril dimers G2W1-G2W4 that are insoluble in water and that differ in the nature of their aromatic sidewalls (G2W4: benzene, G2W3: naphthalene, G2W1 and G2W2: triphenylene). We tested G2W1-G2W4 along with comparator H2 as solid-state sequestrants for a panel of five dyes (methylene blue, methylene violet, acridine orange, rhodamine 6G, and methyl violet 6B). We find that catechol-walled H2 (OH substituents) is a superior sequestrant compared to G2W1-G2W4 (OMe substituents). X-ray crystal structures for G2W1 and G2W3 suggest that the OMe groups fill their own cavity and thereby decrease their abilities as sequestrants. H2 achieved a removal efficiency of 94% for methylene blue whereas G2W1 demonstrated a 64% removal efficiency for methylene violet; both sequestration processes were largely complete within 10 minutes.
{"title":"Insoluble methylene-bridged glycoluril dimers as sequestrants for dyes.","authors":"Suvenika Perera, Peter Y Zavalij, Lyle Isaacs","doi":"10.3762/bjoc.21.176","DOIUrl":"10.3762/bjoc.21.176","url":null,"abstract":"<p><p>Contamination of water bodies by micropollutants including industrial dyes is a worldwide health and environmental concern. We report the design, synthesis, and characterization of a series of methylene-bridged glycoluril dimers <b>G2W1</b>-<b>G2W4</b> that are insoluble in water and that differ in the nature of their aromatic sidewalls (<b>G2W4</b>: benzene, <b>G2W3</b>: naphthalene, <b>G2W1</b> and <b>G2W2</b>: triphenylene). We tested <b>G2W1</b>-<b>G2W4</b> along with comparator <b>H2</b> as solid-state sequestrants for a panel of five dyes (methylene blue, methylene violet, acridine orange, rhodamine 6G, and methyl violet 6B). We find that catechol-walled <b>H2</b> (OH substituents) is a superior sequestrant compared to <b>G2W1</b>-<b>G2W4</b> (OMe substituents). X-ray crystal structures for <b>G2W1</b> and <b>G2W3</b> suggest that the OMe groups fill their own cavity and thereby decrease their abilities as sequestrants. <b>H2</b> achieved a removal efficiency of 94% for methylene blue whereas <b>G2W1</b> demonstrated a 64% removal efficiency for methylene violet; both sequestration processes were largely complete within 10 minutes.</p>","PeriodicalId":8756,"journal":{"name":"Beilstein Journal of Organic Chemistry","volume":"21 ","pages":"2302-2314"},"PeriodicalIF":2.1,"publicationDate":"2025-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12580995/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145443786","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-29eCollection Date: 2025-01-01DOI: 10.3762/bjoc.21.175
Johannes Puschnig, Martyn Jevric, Ben W Greatrex
Halogenated butyrolactones are found in a variety of bioactive materials and used for the construction of nucleoside analogues. Short procedures for their synthesis have been developed starting with levoglucosenone, which can be obtained in a single step from the pyrolysis of acid-treated cellulose. The processes use inexpensive reagents for the stereoselective C3 functionalization of the bicyclic ring system, with a subsequent Baeyer-Villiger oxidation affording the fluorinated, chlorinated, and brominated dideoxyribonolactones.
{"title":"Halogenated butyrolactones from the biomass-derived synthon levoglucosenone.","authors":"Johannes Puschnig, Martyn Jevric, Ben W Greatrex","doi":"10.3762/bjoc.21.175","DOIUrl":"10.3762/bjoc.21.175","url":null,"abstract":"<p><p>Halogenated butyrolactones are found in a variety of bioactive materials and used for the construction of nucleoside analogues. Short procedures for their synthesis have been developed starting with levoglucosenone, which can be obtained in a single step from the pyrolysis of acid-treated cellulose. The processes use inexpensive reagents for the stereoselective C3 functionalization of the bicyclic ring system, with a subsequent Baeyer-Villiger oxidation affording the fluorinated, chlorinated, and brominated dideoxyribonolactones.</p>","PeriodicalId":8756,"journal":{"name":"Beilstein Journal of Organic Chemistry","volume":"21 ","pages":"2297-2301"},"PeriodicalIF":2.1,"publicationDate":"2025-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12581009/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145443801","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-28eCollection Date: 2025-01-01DOI: 10.3762/bjoc.21.174
Anna C Renner, Sagar S Thorat, Hariharaputhiran Subramanian, Mukund P Sibi
This perspective is focused on enantioselective free radical reactions. It describes several important catalytic asymmetric strategies applied to enantioselective radical reactions, including chiral Lewis acid catalysis, organocatalysis, photoredox catalysis, chiral transition-metal catalysis and photoenzymatic catalysis. The application of electrochemistry to asymmetric radical transformations is also discussed.
{"title":"Enantioselective radical chemistry: a bright future ahead.","authors":"Anna C Renner, Sagar S Thorat, Hariharaputhiran Subramanian, Mukund P Sibi","doi":"10.3762/bjoc.21.174","DOIUrl":"10.3762/bjoc.21.174","url":null,"abstract":"<p><p>This perspective is focused on enantioselective free radical reactions. It describes several important catalytic asymmetric strategies applied to enantioselective radical reactions, including chiral Lewis acid catalysis, organocatalysis, photoredox catalysis, chiral transition-metal catalysis and photoenzymatic catalysis. The application of electrochemistry to asymmetric radical transformations is also discussed.</p>","PeriodicalId":8756,"journal":{"name":"Beilstein Journal of Organic Chemistry","volume":"21 ","pages":"2283-2296"},"PeriodicalIF":2.1,"publicationDate":"2025-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12581008/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145443798","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-27eCollection Date: 2025-01-01DOI: 10.3762/bjoc.21.173
Hezhen Han, Wenjie Mao, Bin Lin, Maosheng Cheng, Lu Yang, Yongxiang Liu
This review presents a paradigm-shifting "pathway economy" strategy for 1,n-enyne cyclization, enabling divergent construction of complex molecular architectures from a single substrate class. Through mechanistic-guided modulation of catalysts, solvents, ligands, and angle strain, this approach achieves unprecedented reaction pathway control while demonstrating superior temporal and step efficiency compared to conventional methods. The work establishes a sustainable framework for rapid molecular diversification, offering transformative potential for green chemistry and pharmaceutical applications. By unifying mechanistic insights with practical synthetic design, this review provides valuable guidance for future innovations in precision organic synthesis.
{"title":"Pathway economy in cyclization of 1<i>,n</i>-enynes.","authors":"Hezhen Han, Wenjie Mao, Bin Lin, Maosheng Cheng, Lu Yang, Yongxiang Liu","doi":"10.3762/bjoc.21.173","DOIUrl":"10.3762/bjoc.21.173","url":null,"abstract":"<p><p>This review presents a paradigm-shifting \"pathway economy\" strategy for 1,<i>n</i>-enyne cyclization, enabling divergent construction of complex molecular architectures from a single substrate class. Through mechanistic-guided modulation of catalysts, solvents, ligands, and angle strain, this approach achieves unprecedented reaction pathway control while demonstrating superior temporal and step efficiency compared to conventional methods. The work establishes a sustainable framework for rapid molecular diversification, offering transformative potential for green chemistry and pharmaceutical applications. By unifying mechanistic insights with practical synthetic design, this review provides valuable guidance for future innovations in precision organic synthesis.</p>","PeriodicalId":8756,"journal":{"name":"Beilstein Journal of Organic Chemistry","volume":"21 ","pages":"2260-2282"},"PeriodicalIF":2.1,"publicationDate":"2025-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12580996/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145443843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-24eCollection Date: 2025-01-01DOI: 10.3762/bjoc.21.172
Vinay Kumar Singh, Frédéric Justaud, Dabbugoddu Brahmaiah, Nangunoori Sampath Kumar, Blandine Baratte, Thomas Robert, Stéphane Bach, Chada Raji Reddy, Nicolas Levoin, René L Grée
The cdc2-like kinases (CLKs), are a family of kinases that attracted recently the interest of scientists due to their significant biological roles, in particular in the regulation of the mRNA splicing process. Among the four isoforms of CLKs, CLK3 is the one for which the biological roles are less understood, in part because no selective inhibitor of this challenging kinase has been found to date. Based on structural analysis of the CLKs we have identified the lysine 241, present only in CLK3, as an attractive residue to design inhibitors with increased affinity towards this kinase as compared to the three other isoforms CLK1, CLK2, and CLK4. Based on this observation, we have been able to transform a molecule (DB18) previously established with a very low activity on CLK3 into a derivative VS-77 which has now a significant affinity toward CLK3 (IC50 = 0.3 μM). Thus, VS-77 appears as a new pan-inhibitor of the CLK family.
{"title":"Research towards selective inhibition of the CLK3 kinase.","authors":"Vinay Kumar Singh, Frédéric Justaud, Dabbugoddu Brahmaiah, Nangunoori Sampath Kumar, Blandine Baratte, Thomas Robert, Stéphane Bach, Chada Raji Reddy, Nicolas Levoin, René L Grée","doi":"10.3762/bjoc.21.172","DOIUrl":"10.3762/bjoc.21.172","url":null,"abstract":"<p><p>The cdc2-like kinases (CLKs), are a family of kinases that attracted recently the interest of scientists due to their significant biological roles, in particular in the regulation of the mRNA splicing process. Among the four isoforms of CLKs, CLK3 is the one for which the biological roles are less understood, in part because no selective inhibitor of this challenging kinase has been found to date. Based on structural analysis of the CLKs we have identified the lysine 241, present only in CLK3, as an attractive residue to design inhibitors with increased affinity towards this kinase as compared to the three other isoforms CLK1, CLK2, and CLK4. Based on this observation, we have been able to transform a molecule (<b>DB18</b>) previously established with a very low activity on CLK3 into a derivative <b>VS-77</b> which has now a significant affinity toward CLK3 (IC<sub>50</sub> = 0.3 μM). Thus, <b>VS-77</b> appears as a new pan-inhibitor of the CLK family.</p>","PeriodicalId":8756,"journal":{"name":"Beilstein Journal of Organic Chemistry","volume":"21 ","pages":"2250-2259"},"PeriodicalIF":2.1,"publicationDate":"2025-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12557437/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145386417","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}