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The effects of cetuximab and cisplatin anti-cancer drugs on the mechanical properties of the lung cancerous cells using atomic force microscope. 原子力显微镜下观察西妥昔单抗和顺铂抗癌药物对肺癌细胞力学性质的影响。
IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-07-12 DOI: 10.1139/bcb-2022-0322
Iraj Rezaei, Ali Sadeghi

Each anti-cancer drug has special effects on the target cells. One of the most important reasons to recommend an anti-cancer drug is related to the influences of it on the mechanical properties of the target cells. In this study, the effects of cetuximab and cisplatin anti-cancer drugs on the mechanical properties of A-549 and Calu-6 cells as the cancerous lung cells have been investigated. For both of the cells and anti-cancer drugs, MTT assessment has been used to define the convenient dosages for 24 and 48 h incubations based on IC50 concentration for the cell line viability. The mechanical specifications of the cells before and after treatment were obtained using nanoindentation by the JPK Instruments' NanoWizard3 atomic force microscope. The results show that cetuximab increases the stiffness of A-549 cell from 1225 to 3403 and 12 690 Pa for 24 and 48 h incubations. The influence of cetuximab on the Calu-6 shows that the elastic modulus after 24 and 48 h culture times increases about cisplatin anti-cancer drug, for A-549 cell indicates that the elastic modulus rises from 1225 to 1506 and 2375 Pa for 24 and 48 h, respectively. For Calu-6 cell, cisplatin has an important role to increase the stiffness of the cell. Applying cisplatin increases the elastic modulus from 33 to 682.8 Pa for 24 h and 1105 Pa after 48 h incubations.

每种抗癌药物对靶细胞都有特殊作用。推荐抗癌药物的一个最重要的原因是它对靶细胞的机械特性的影响。本研究研究了西妥昔单抗和顺铂抗癌药物对肺癌细胞A-549和Calu-6细胞力学性能的影响。对于细胞和抗癌药物,根据IC50浓度确定孵育24和48 h的适宜剂量。利用JPK Instruments的NanoWizard3原子力显微镜,采用纳米压痕法获得处理前后细胞的力学指标。结果表明,西妥昔单抗可使A-549细胞在24和48 h的孵育下从1225到3403和12 690 Pa的刚度增加。西妥昔单抗对Calu-6的影响表明,顺铂类抗癌药物培养24和48 h后弹性模量增加,对于A-549细胞,培养24和48 h后弹性模量分别从1225上升到1506和2375 Pa。对于Calu-6细胞,顺铂对增加细胞刚度有重要作用。应用顺铂使24 h的弹性模量从33增加到682.8 Pa, 48 h后的弹性模量为1105 Pa。
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引用次数: 0
The G protein-coupled receptor GPRC5A-a phorbol ester and retinoic acid-induced orphan receptor with roles in cancer, inflammation, and immunity. G蛋白偶联受体gprc5 -a -酚酯和视黄酸诱导的孤儿受体在癌症、炎症和免疫中起作用。
IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-07-19 DOI: 10.1139/bcb-2022-0352
Pablo A Iglesias González, Ángel G Valdivieso, Tomás A Santa-Coloma

GPRC5A is the first member of a new class of orphan receptors coupled to G proteins, which also includes GPRC5B, GPRC5C, and GPRC5D. Since its cloning and identification in the 1990s, substantial progress has been made in understanding the possible functions of this receptor. GPRC5A has been implicated in a variety of cellular events, such as cytoskeleton reorganization, cell proliferation, cell cycle regulation, migration, and survival. It appears to be a central player in different pathological processes, including tumorigenesis, inflammation, immune response, and tissue damage. The levels of GPRC5A expression differ depending on the type of cancer, with increased expression in colon, pancreas, and prostate cancers; decreased expression in lung cancer; and varied results in breast cancer. In this review, we discuss the early discovery of GPRC5A as a phorbol ester-induced gene and later as a retinoic acid-induced gene, its regulation, and its participation in important canonical pathways related to numerous types of tumors and inflammatory processes. GPRC5A represents a potential new target for cancer, inflammation, and immunity therapies.

GPRC5A是一类与G蛋白偶联的孤儿受体的第一个成员,该受体还包括GPRC5B、GPRC5C和GPRC5D。自20世纪90年代克隆和鉴定以来,对该受体可能功能的了解取得了实质性进展。GPRC5A参与多种细胞事件,如细胞骨架重组、细胞增殖、细胞周期调节、迁移和存活。它似乎在不同的病理过程中起着核心作用,包括肿瘤发生、炎症、免疫反应和组织损伤。GPRC5A的表达水平因癌症类型而异,在结肠癌、胰腺癌和前列腺癌中表达增加;肺癌中表达降低;乳腺癌的结果也不尽相同。在这篇综述中,我们讨论了GPRC5A作为佛波酯诱导基因的早期发现,以及后来作为视黄酸诱导基因的发现,它的调控,以及它在与多种类型的肿瘤和炎症过程相关的重要规范通路中的参与。GPRC5A代表了癌症、炎症和免疫治疗的潜在新靶点。
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引用次数: 0
Suppression of academics and school training in Iran during the "Woman, Life, Freedom" revolution. 在“妇女、生命、自由”革命期间,伊朗对学者和学校培训的压制。
IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-05-19 DOI: 10.1139/bcb-2023-0100
Shahla Shojaei, Nima Taefehshokr, Saeid Ghavami

For the past 6 months, there has been an ongoing revolution in Iran after the brutal death of Zhina (Mahsa) Amini in morality police custody. Iranian universities' professors and students have been on the frontline of this revolution and have been fired or sentenced. On the other hand, Iranian high schools and primary schools have been under suspected toxic gas attack. In the current article, the latest status of oppression of the university students and professors and toxic gas attack on primary and high schools in Iran has been evaluated.

在过去的6个月里,在Zhina (Mahsa) Amini被道德警察拘留后,伊朗发生了一场持续不断的革命。伊朗大学的教授和学生一直站在这场革命的前线,有的被解雇,有的被判刑。另一方面,伊朗的高中和小学疑似遭到毒气袭击。在这篇文章中,我们评估了伊朗对大学生和教授的压迫以及对小学和中学的毒气袭击的最新情况。
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引用次数: 1
Targeting PTGES/PGE2 axis enhances sensitivity of colorectal cancer cells to 5-fluorouracil. 靶向PTGES/PGE2轴增强结直肠癌细胞对5-氟尿嘧啶的敏感性
IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-06-26 DOI: 10.1139/bcb-2023-0101
Song Geng, Hao Zhan, Lianmeng Cao, Longlong Geng, Xiang Ren

Insensitivity and resistance to 5-fluorouracil (5FU) remain as major hurdles for effective and durable 5FU-based chemotherapy in colorectal cancer (CRC) patients. In this study, we identified prostaglandin E synthase (PTGES)/prostaglandin E2 (PGE2) axis as an important regulator for 5FU sensitivity in CRC cells. We found that PTGES expression and PGE2 production are elevated in CRC cells in comparison to normal colorectal epithelial cells. Depletion of PTGES significantly enhanced the inhibitory effect of 5FU on CRC cell viability that was fully reverted by exogenous supplement of PGE2. Inhibition of PTGES enzymatic function, by either inducing loss-of-function mutant or treatment with selective inhibitors, phenocopied the PTGES depletion in terms of 5FU sensitization. Mechanistically, PTGES/PGE2 axis modulates glycolysis in CRC cells, thereby regulating the 5FU sensitivity. Importantly, high PTGES expression is correlated with poor prognosis in 5FU-treated CRC patients. Thus, our study defines PTGES/PGE2 axis as a novel therapeutic target for enhancing the efficacy of 5FU-based chemotherapy in CRC.

5-氟尿嘧啶(5FU)的不敏感和耐药仍然是结直肠癌(CRC)患者有效和持久的5FU化疗的主要障碍。在本研究中,我们发现前列腺素E合成酶(PTGES)/前列腺素E2 (PGE2)轴是CRC细胞中5FU敏感性的重要调节因子。我们发现,与正常结肠上皮细胞相比,结直肠癌细胞中PTGES的表达和PGE2的产生升高。PTGES的缺失显著增强了5FU对CRC细胞活力的抑制作用,外源性补充PGE2完全恢复了这种抑制作用。通过诱导功能丧失突变体或用选择性抑制剂治疗来抑制PTGES酶功能,在5FU致敏方面表现了PTGES的耗竭。在机制上,PTGES/PGE2轴调节CRC细胞中的糖酵解,从而调节5FU的敏感性。重要的是,在5fu治疗的CRC患者中,高PTGES表达与预后不良相关。因此,我们的研究将PTGES/PGE2轴定义为一种新的治疗靶点,可以提高基于5fu的结直肠癌化疗的疗效。
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引用次数: 0
Nootkatone attenuates airway inflammation in asthmatic mice through repressing ROS-induced NLRP3 inflammasome activation. 诺卡酮通过抑制ros诱导的NLRP3炎性体激活来减轻哮喘小鼠气道炎症。
IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-07-19 DOI: 10.1139/bcb-2023-0009
Yun Gai, Chong Bai, Wei Zhang, Hua Xiao, Jing Xu, Jia Hou, Xiahui Ge

Nootkatone (NKT) exhibits potential pharmacological activities including anti-oxidation and anti-inflammation. Nevertheless, little is known about the roles of NKT in asthmatic airway inflammation. In the study, mice were sensitized and challenged with ovalbumin (OVA) to establish experimental allergic asthma model. After treatment with NKT, lung tissues, peripheral blood, and bronchoalveolar lavage fluid (BALF) were collected to assess inflammatory cytokines, oxidative stress, and pathological alternations. The effects of NKT on regulating reactive oxygen species (ROS)-induced NLR family pyrin domain containing 3 (NLRP3) inflammasome activation was assessed in IL-13-treated BEAS-2B cell model. We found that NKT treatment decreased the production of Th2 inflammatory cytokines (IL-4, IL-5, and IL-13) in BALF and IgE levels in serum, and alleviated inflammatory cell penetration, goblet cell proliferation, collagen accumulation, and mucus hypersecretion in lung tissues. NKT treatment mitigated oxidative stress and NLRP3 inflammasome activation in asthmatic mice. IL-13 treatment induced oxidative stress and NLRP3-mediated pyroptosis in BEAS-2B bronchial epithelial cells, whereas these effects were blocked by NKT. NKT protected against airway remodeling, as indicated by decreased epithelial-mesenchymal transition. Taken together, these results demonstrate that NKT mitigates asthmatic airway inflammation by inhibiting ROS-triggered NLRP3 activation and may be a potential agent for treating asthma.

诺卡酮(NKT)具有抗氧化和抗炎症等潜在药理活性。然而,对NKT在哮喘气道炎症中的作用知之甚少。本研究采用卵清蛋白(OVA)致敏和激发小鼠,建立实验性过敏性哮喘模型。在NKT治疗后,收集肺组织、外周血和支气管肺泡灌洗液(BALF)来评估炎症细胞因子、氧化应激和病理改变。在il -13处理的BEAS-2B细胞模型中,研究了NKT对活性氧(ROS)诱导的NLR家族pyrin domain containing 3 (NLRP3)炎性小体活化的调节作用。我们发现,NKT治疗降低了Th2炎性细胞因子(IL-4、IL-5和IL-13)的产生、血清BALF和IgE水平,减轻了肺组织中炎症细胞渗透、杯状细胞增殖、胶原积累和粘液高分泌。NKT治疗可减轻哮喘小鼠的氧化应激和NLRP3炎性体激活。IL-13处理诱导BEAS-2B支气管上皮细胞氧化应激和nlrp3介导的热凋亡,而这些作用被NKT阻断。NKT可以防止气道重塑,这可以通过减少上皮-间质转化来证明。综上所述,这些结果表明NKT通过抑制ros触发的NLRP3激活来减轻哮喘气道炎症,可能是治疗哮喘的潜在药物。
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引用次数: 0
Naïve Bayes classifier assisted automated detection of cerebral microbleeds in susceptibility-weighted imaging brain images. 在敏感性加权成像脑图像中,朴素贝叶斯分类器辅助脑微出血的自动检测。
IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-08-28 DOI: 10.1139/bcb-2023-0156
Tayyab Ateeq, Zaid Bin Faheem, Mohamed Ghoneimy, Jehad Ali, Yang Li, Abdullah Baz

Cerebral microbleeds (CMBs) in the brain are the essential indicators of critical brain disorders such as dementia and ischemic stroke. Generally, CMBs are detected manually by experts, which is an exhaustive task with limited productivity. Since CMBs have complex morphological nature, manual detection is prone to errors. This paper presents a machine learning-based automated CMB detection technique in the brain susceptibility-weighted imaging (SWI) scans based on statistical feature extraction and classification. The proposed method consists of three steps: (1) removal of the skull and extraction of the brain; (2) thresholding for the extraction of initial candidates; and (3) extracting features and applying classification models such as random forest and naïve Bayes classifiers for the detection of true positive CMBs. The proposed technique is validated on a dataset consisting of 20 subjects. The dataset is divided into training data that consist of 14 subjects with 104 microbleeds and testing data that consist of 6 subjects with 63 microbleeds. We were able to achieve 85.7% sensitivity using the random forest classifier with 4.2 false positives per CMB, and the naïve Bayes classifier achieved 90.5% sensitivity with 5.5 false positives per CMB. The proposed technique outperformed many state-of-the-art methods proposed in previous studies.

大脑中的脑微出血(CMBs)是痴呆和缺血性中风等严重脑疾病的基本指标。通常,CMB是由专家手动检测的,这是一项效率有限的详尽任务。由于CMB具有复杂的形态学性质,手动检测容易出错。本文提出了一种基于统计特征提取和分类的脑易感性加权成像(SWI)扫描中基于机器学习的自动CMB检测技术。所提出的方法包括三个步骤:(1)颅骨切除和大脑提取;(2) 用于提取初始候选的阈值;以及(3)提取特征并应用诸如随机森林和朴素贝叶斯分类器的分类模型来检测真阳性CMB。在由20名受试者组成的数据集上验证了所提出的技术。数据集分为训练数据和测试数据,训练数据由14名受试者和104名微出血组成,测试数据由6名受试人和63名微出血构成。我们能够使用随机森林分类器实现85.7%的灵敏度,每个CMB有4.2个假阳性,而天真贝叶斯分类器实现90.5%的灵敏度,每CMB有5.5个假阳性。所提出的技术优于先前研究中提出的许多最先进的方法。
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引用次数: 0
Attention-based deep learning framework to recognize diabetes disease from cellular retinal images. 基于注意力的深度学习框架从细胞视网膜图像中识别糖尿病疾病。
IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-12-01 Epub Date: 2023-07-20 DOI: 10.1139/bcb-2023-0151
Deep Kothadiya, Amjad Rehman, Sidra Abbas, Faten S Alamri, Tanzila Saba

A medical disorder known as diabetic retinopathy (DR) affects people who suffer from diabetes. Many people are visually impaired due to DR. Primary cause of DR in patients is high blood sugar, and it affects blood vessels available in the retinal cell. The recent advancement in deep learning and computer vision methods, and their automation applications can recognize the presence of DR in retinal cells and vessel images. Authors have proposed an attention-based hybrid model to recognize diabetes in early stage to prevent harmful clauses. Proposed methodology uses DenseNet121 architecture for convolution learning and then, the feature vector will be enhanced with channel and spatial attention model. The proposed architecture also simulates binary and multiclass classification to recognize the infection and the spreading of disease. Binary classification recognizes DR images either positive or negative, while multiclass classification represents an infection on a scale of 0-4. Simulation of the proposed methodology has achieved 98.57% and 99.01% accuracy for multiclass and binary classification, respectively. Simulation of the study also explored the impact of data augmentation to make the proposed model robust and generalized. Attention-based deep learning model has achieved remarkable accuracy to detect diabetic infection from retinal cellular images.

一种被称为糖尿病视网膜病变(DR)的医学疾病影响着糖尿病患者。许多人因DR而视力受损,患者的主要原因是高血糖,它会影响视网膜细胞中的血管。深度学习和计算机视觉方法的最新进展及其自动化应用可以识别视网膜细胞和血管图像中DR的存在。作者提出了一种基于注意力的糖尿病早期识别混合模型,以预防有害条款。该方法使用DenseNet121架构进行卷积学习,然后使用通道和空间注意模型增强特征向量。该体系结构还模拟了二元和多类分类,以识别疾病的感染和传播。二分类可识别DR图像阳性或阴性,而多分类代表0-4级的感染。仿真结果表明,该方法在多类分类和二元分类上的准确率分别达到了98.57%和99.01%。该研究的仿真还探讨了数据增强的影响,使所提出的模型具有鲁棒性和泛化性。基于注意力的深度学习模型在检测视网膜细胞图像中的糖尿病感染方面取得了显著的准确性。
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引用次数: 0
Early pigment spot segmentation and classification from iris cellular image analysis with explainable deep learning and multiclass support vector machine. 利用可解释的深度学习和多类支持向量机从虹膜细胞图像分析中进行早期色素斑点分割和分类。
IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-10-31 DOI: 10.1139/bcb-2023-0183
Amjad R Khan, Rabia Javed, Tariq Sadad, Saeed Ali Bahaj, Gabriel Avelino Sampedro, Mideth Abisado

Globally, retinal disorders impact thousands of individuals. Early diagnosis and treatment of these anomalies might halt their development and prevent many people from developing preventable blindness. Iris spot segmentation is critical due to acquiring iris cellular images that suffer from the off-angle iris, noise, and specular reflection. Most currently used iris segmentation techniques are based on edge data and noncellular images. The size of the pigment patches on the surface of the iris increases with eye syndrome. In addition, iris images taken in uncooperative settings frequently have negative noise, making it difficult to segment them precisely. The traditional diagnosis processes are costly and time consuming since they require highly qualified personnel and have strict environments. This paper presents an explainable deep learning model integrated with a multiclass support vector machine to analyze iris cellular images for early pigment spot segmentation and classification. Three benchmark datasets MILE, UPOL, and Eyes SUB were used in the experiments to test the proposed methodology. The experimental results are compared on standard metrics, demonstrating that the proposed model outperformed the methods reported in the literature regarding classification errors. Additionally, it is observed that the proposed parameters are highly effective in locating the micro pigment spots on the iris surfaces.

在全球范围内,视网膜疾病影响着成千上万的人。对这些异常的早期诊断和治疗可能会阻止它们的发展,并防止许多人患上可预防的失明。虹膜斑点分割是至关重要的,因为获取的虹膜细胞图像会受到偏离角度虹膜、噪声和镜面反射的影响。目前使用的大多数虹膜分割技术都是基于边缘数据和非细胞图像。虹膜表面色素斑块的大小随着眼部综合征而增加。此外,在不合作的环境中拍摄的虹膜图像经常具有负噪声,使得难以精确分割。传统的诊断过程成本高昂且耗时,因为它们需要高素质的人员并且具有严格的环境。本文提出了一种可解释的深度学习模型,该模型与多类支持向量机相结合,用于分析虹膜细胞图像,用于早期色素斑分割和分类。实验中使用了三个基准数据集Mile、UPOL和Eyes SUB来测试所提出的方法。实验结果在标准度量上进行了比较,表明所提出的模型在分类误差方面优于文献中报道的方法。此外,观察到所提出的参数在定位虹膜表面上的微色素点方面是非常有效的。
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引用次数: 0
Message from Dr. Philippe T. Georgel, Guest Editor for the Marshall University Collection, Brad D. Smith, President of Marshall University, and Dr. Anivandan Mukherjee, Provost of Marshall University. 马歇尔大学文集客座编辑Philippe T.Georgel博士、马歇尔大学校长Brad D.Smith和马歇尔大学教务长Anivandan Mukherjee博士致辞。
IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-10-01 Epub Date: 2023-04-13 DOI: 10.1139/bcb-2023-0072
Philippe T Georgel, Brad D Smith, Avinandan Mukherjee
Welcome to the Biochemistry and Cell Biology (BCB) Marshall University Collection. In this series, selected papers authored by Marshall University Faculty and Students are highlighted. The inaugural set of manuscripts is based on research projects presented during the 2022 Marshall University Student research and Creativity Symposium in Huntington, West Virginia (see details below). The entire Marshall University (MU) community is very proud of the research and creative activities displayed by our students during this event. In the future, the collection will continue publishing our student-based research, which will carry on displaying high standards of quality and innovation that make us proud of our institution.
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引用次数: 0
Remembering the legacy of Professor Mohammad Hashemi: a pioneer in molecular genetic studies in southeast Iran (1965-2019). 纪念穆罕默德·哈希米教授的遗产:伊朗东南部分子遗传学研究的先驱(1965-2019)。
IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2023-10-01 Epub Date: 2023-05-29 DOI: 10.1139/bcb-2023-0116
Farhad Tabasi, Ebrahim Eskandari, Saeid Ghavmi

Professor Mohammad Hashemi was a clinical biochemist and cancer genetic scientist. He has been chair and head of Department of Clinical Biochemistry at Zahedan University of Medical Sciences, Zahedan, Iran. He has played an important role in the improvement of understanding of genetics of disease in southeast Iran. He was also a part of international team for the discovery of the role of calprotectin (S100A8/A9) in cancer biology via regulation of cell fate in tumor cells. He had over 300 peer-reviewed scientific publications and trained significant numbers of high quality personals (>40) in the field of biomedical sciences. His sudden death in 2019 shocked national and international scientific society but his scientific legacy will remain alive forever.

Mohammad Hashemi教授是一位临床生物化学家和癌症基因科学家。他曾任伊朗扎黑丹医学科学大学临床生物化学系主任。他在提高对伊朗东南部疾病遗传学的理解方面发挥了重要作用。他也是发现钙保护蛋白(S100A8/A9)通过调节肿瘤细胞的细胞命运在癌症生物学中的作用的国际团队的一员。他拥有300多份同行评审的科学出版物,并在生物医学领域培训了大量高素质的人才(>40人)。他于2019年突然去世,震惊了国家和国际科学社会,但他的科学遗产将永远存在。
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引用次数: 0
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