首页 > 最新文献

The open medical informatics journal最新文献

英文 中文
Data mining techniques in medical informatics. 医学信息学中的数据挖掘技术。
Pub Date : 2010-05-28 DOI: 10.2174/1874431101004020021
U Rajendra Acharya, Wenwei Yu
The advent of high-performance computing has benefited various disciplines in finding practical solutions to their problems, and our health care is no exception to this. Signal processing, image processing, and data mining tools have been developed for effective analysis of medical information, in order to help clinicians in making better diagnosis for treatment purposes. Data mining has become a fundamental methodology for computing applications in medical informatics. Progress in data mining applications and its implications are manifested in the areas of information management in healthcare organizations, health informatics, epidemiology, patient care and monitoring systems, assistive technology, large-scale image analysis to information extraction and automatic identification of unknown classes. Various algorithms associated with data mining have significantly helped to understand medical data more clearly, by distinguishing pathological data from normal data, for supporting decision-making as well as visualization and identification of hidden complex relationships between diagnostic features of different patient groups. There are nine papers in this Special issue, covering different areas in medical informatics. Paper 1 proposes a metabonomic study applied to medical diagnosis. Metabolomics and metabonomics belong to the “-omics” sciences. Particularly, metabonomic correlates the metabolic fingerprint to characteristics of specific patient categories. Usually, metabonomic studies are conducted by in-vitro spectroscopy. The aim of this study was to apply data-mining metabonomic techniques to the clinical diagnosis of genetic mutations in migraine sufferers. This is one of the first applications of advanced data-mining techniques to a mixed database consisting of hematochemical, instrumental, and genetic variables. There has been an effort to use motion-related surface vibration, to detect independent finger motions is in practice. Accelerometers have been used in a finger tapping experiment to collect the finger motion related mechanical vibration patterns. The extracted time-domain and frequency-domain features were fed to back-propagation neural networks, to classify different finger motions. The insights provided in paper 2 will be helpful for prosthetic hand control. Microscopic imaging is ubiquitous in several medical informatics disciplines, including but not limited to cancer informatics, neuro-informatics, and other emerging health informatics disciplines. The decision support applications frequently require the sensitive and specific detection of pathological changes in cells, which further require the accurate measurement of their geometric parameters. In paper 3, Du et al. have suggested that due to the complex nature of cell issues and problems inherent to microscopy, unsupervised mining approaches of clustering can be incorporated in the segmentation of cells. They have evaluated the performance of multiple unsupervis
{"title":"Data mining techniques in medical informatics.","authors":"U Rajendra Acharya, Wenwei Yu","doi":"10.2174/1874431101004020021","DOIUrl":"https://doi.org/10.2174/1874431101004020021","url":null,"abstract":"The advent of high-performance computing has benefited various disciplines in finding practical solutions to their problems, and our health care is no exception to this. Signal processing, image processing, and data mining tools have been developed for effective analysis of medical information, in order to help clinicians in making better diagnosis for treatment purposes. \u0000 \u0000Data mining has become a fundamental methodology for computing applications in medical informatics. Progress in data mining applications and its implications are manifested in the areas of information management in healthcare organizations, health informatics, epidemiology, patient care and monitoring systems, assistive technology, large-scale image analysis to information extraction and automatic identification of unknown classes. Various algorithms associated with data mining have significantly helped to understand medical data more clearly, by distinguishing pathological data from normal data, for supporting decision-making as well as visualization and identification of hidden complex relationships between diagnostic features of different patient groups. There are nine papers in this Special issue, covering different areas in medical informatics. \u0000 \u0000Paper 1 proposes a metabonomic study applied to medical diagnosis. Metabolomics and metabonomics belong to the “-omics” sciences. Particularly, metabonomic correlates the metabolic fingerprint to characteristics of specific patient categories. Usually, metabonomic studies are conducted by in-vitro spectroscopy. The aim of this study was to apply data-mining metabonomic techniques to the clinical diagnosis of genetic mutations in migraine sufferers. This is one of the first applications of advanced data-mining techniques to a mixed database consisting of hematochemical, instrumental, and genetic variables. \u0000 \u0000There has been an effort to use motion-related surface vibration, to detect independent finger motions is in practice. Accelerometers have been used in a finger tapping experiment to collect the finger motion related mechanical vibration patterns. The extracted time-domain and frequency-domain features were fed to back-propagation neural networks, to classify different finger motions. The insights provided in paper 2 will be helpful for prosthetic hand control. \u0000 \u0000Microscopic imaging is ubiquitous in several medical informatics disciplines, including but not limited to cancer informatics, neuro-informatics, and other emerging health informatics disciplines. The decision support applications frequently require the sensitive and specific detection of pathological changes in cells, which further require the accurate measurement of their geometric parameters. In paper 3, Du et al. have suggested that due to the complex nature of cell issues and problems inherent to microscopy, unsupervised mining approaches of clustering can be incorporated in the segmentation of cells. They have evaluated the performance of multiple unsupervis","PeriodicalId":88331,"journal":{"name":"The open medical informatics journal","volume":"4 ","pages":"21-2"},"PeriodicalIF":0.0,"publicationDate":"2010-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2174/1874431101004020021","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"29176045","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
Datamining Approach for Automation of Diagnosis of Breast Cancer in Immunohistochemically Stained Tissue Microarray Images~!2009-10-04~!2009-11-14~!2010-05-28~! 免疫组织化学染色组织芯片图像中乳腺癌自动诊断的数据挖掘方法2009-10-04 2009-11-14 2010-05-28
Pub Date : 2010-05-28 DOI: 10.2174/1874431101004020086
K. Prasad
{"title":"Datamining Approach for Automation of Diagnosis of Breast Cancer in Immunohistochemically Stained Tissue Microarray Images~!2009-10-04~!2009-11-14~!2010-05-28~!","authors":"K. Prasad","doi":"10.2174/1874431101004020086","DOIUrl":"https://doi.org/10.2174/1874431101004020086","url":null,"abstract":"","PeriodicalId":88331,"journal":{"name":"The open medical informatics journal","volume":"54 1","pages":"86-93"},"PeriodicalIF":0.0,"publicationDate":"2010-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80103669","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Association Rule Based Similarity Measures for the Clustering of Gene Expression Data~!2009-10-10~!2009-11-05~!2010-05-28~! 基于关联规则的基因表达数据相似性度量聚类研究2009-10-10
Pub Date : 2010-05-28 DOI: 10.2174/1874431101004020063
P. Sethi
{"title":"Association Rule Based Similarity Measures for the Clustering of Gene Expression Data~!2009-10-10~!2009-11-05~!2010-05-28~!","authors":"P. Sethi","doi":"10.2174/1874431101004020063","DOIUrl":"https://doi.org/10.2174/1874431101004020063","url":null,"abstract":"","PeriodicalId":88331,"journal":{"name":"The open medical informatics journal","volume":"53 1","pages":"63-73"},"PeriodicalIF":0.0,"publicationDate":"2010-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83093719","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dynamic modelling of heart rate response under different exercise intensity. 不同运动强度下心率反应的动态建模。
Pub Date : 2010-05-28 DOI: 10.2174/1874431101004020081
Steven W Su, Weidong Chen, Dongdong Liu, Yi Fang, Weijun Kuang, Xiaoxiang Yu, Tian Guo, Branko G Celler, Hung T Nguyen

Heart rate is one of the major indications of human cardiovascular response to exercises. This study investigates human heart rate response dynamics to moderate exercise. A healthy male subject has been asked to walk on a motorised treadmill under a predefined exercise protocol. ECG, body movements, and oxygen saturation (SpO2) have been reliably monitored and recorded by using non-invasive portable sensors. To reduce heart rate variation caused by the influence of various internal or external factors, the designed step response protocol has been repeated three times. Experimental results show that both steady state gain and time constant of heart rate response are not invariant when walking speed is faster than 3 miles/hour, and time constant of offset exercise is noticeably longer than that of onset exercise.

心率是人体心血管对运动反应的主要指标之一。本研究探讨适度运动对人体心率的反应动态。一名健康的男性受试者被要求在预定的运动方案下在电动跑步机上行走。使用无创便携式传感器可靠地监测和记录心电图、身体运动和血氧饱和度(SpO2)。为了减少由于各种内外因素的影响而引起的心率变化,设计的阶跃反应方案重复了三次。实验结果表明,当步行速度大于3英里/小时时,心率反应的稳态增益和时间常数都不是不变的,偏移运动的时间常数明显长于起始运动。
{"title":"Dynamic modelling of heart rate response under different exercise intensity.","authors":"Steven W Su,&nbsp;Weidong Chen,&nbsp;Dongdong Liu,&nbsp;Yi Fang,&nbsp;Weijun Kuang,&nbsp;Xiaoxiang Yu,&nbsp;Tian Guo,&nbsp;Branko G Celler,&nbsp;Hung T Nguyen","doi":"10.2174/1874431101004020081","DOIUrl":"https://doi.org/10.2174/1874431101004020081","url":null,"abstract":"<p><p>Heart rate is one of the major indications of human cardiovascular response to exercises. This study investigates human heart rate response dynamics to moderate exercise. A healthy male subject has been asked to walk on a motorised treadmill under a predefined exercise protocol. ECG, body movements, and oxygen saturation (SpO2) have been reliably monitored and recorded by using non-invasive portable sensors. To reduce heart rate variation caused by the influence of various internal or external factors, the designed step response protocol has been repeated three times. Experimental results show that both steady state gain and time constant of heart rate response are not invariant when walking speed is faster than 3 miles/hour, and time constant of offset exercise is noticeably longer than that of onset exercise.</p>","PeriodicalId":88331,"journal":{"name":"The open medical informatics journal","volume":"4 ","pages":"81-5"},"PeriodicalIF":0.0,"publicationDate":"2010-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2174/1874431101004020081","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"29176048","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 26
Diagnosis of esophagitis based on face recognition techniques. 基于人脸识别技术的食管炎诊断。
Pub Date : 2010-05-28 DOI: 10.2174/1874431101004020058
Santosh S Saraf, Gururaj R Udupi, Santosh D Hajare

Face recognition technology has evolved over years with the Principal Component Analysis (PCA) method being the benchmark for recognition efficiency. The face recognition techniques take care of variation of illumination, pose and other features of the face in the image. We envisage an application of these face recognition techniques for classification of medical images. The motivating factor being, given a condition of an organ it is represented by some typical features. In this paper we report the use of the face recognition techniques to classify the type of Esophagitis, a condition of inflammation of the esophagus. The image of the esophagus is captured in the process of endoscopy. We test PCA, Fisher Face method and Independent Component Analysis techniques to classify the images of the esophagus. Esophagitis is classified into four categories. The results of classification for each method are reported and the results are compared.

人脸识别技术经过多年的发展,主成分分析(PCA)方法是识别效率的基准。人脸识别技术考虑到图像中人脸的光照、姿态和其他特征的变化。我们设想将这些人脸识别技术应用于医学图像的分类。激励因素是,给定一个器官的状况,它是由一些典型的特征来表示的。在本文中,我们报告了使用面部识别技术来分类食管炎的类型,这是一种食道炎症的情况。食管的图像是在内镜检查过程中拍摄的。我们测试了PCA、Fisher Face法和独立分量分析技术来对食管图像进行分类。食管炎分为四类。报告了每种方法的分类结果,并对结果进行了比较。
{"title":"Diagnosis of esophagitis based on face recognition techniques.","authors":"Santosh S Saraf,&nbsp;Gururaj R Udupi,&nbsp;Santosh D Hajare","doi":"10.2174/1874431101004020058","DOIUrl":"https://doi.org/10.2174/1874431101004020058","url":null,"abstract":"<p><p>Face recognition technology has evolved over years with the Principal Component Analysis (PCA) method being the benchmark for recognition efficiency. The face recognition techniques take care of variation of illumination, pose and other features of the face in the image. We envisage an application of these face recognition techniques for classification of medical images. The motivating factor being, given a condition of an organ it is represented by some typical features. In this paper we report the use of the face recognition techniques to classify the type of Esophagitis, a condition of inflammation of the esophagus. The image of the esophagus is captured in the process of endoscopy. We test PCA, Fisher Face method and Independent Component Analysis techniques to classify the images of the esophagus. Esophagitis is classified into four categories. The results of classification for each method are reported and the results are compared.</p>","PeriodicalId":88331,"journal":{"name":"The open medical informatics journal","volume":"4 ","pages":"58-62"},"PeriodicalIF":0.0,"publicationDate":"2010-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2174/1874431101004020058","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"29176046","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Datamining approach for automation of diagnosis of breast cancer in immunohistochemically stained tissue microarray images. 免疫组织化学染色组织芯片图像中自动化诊断乳腺癌的数据挖掘方法。
Pub Date : 2010-05-28 DOI: 10.2174/1874431101004010086
Keerthana Prasad, Bernhard Zimmermann, Gopalakrishna Prabhu, Muktha Pai

Cancer of the breast is the second most common human neoplasm, accounting for approximately one quarter of all cancers in females after cervical carcinoma. Estrogen receptor (ER), Progesteron receptor and human epidermal growth factor receptor (HER-2/neu) expressions play an important role in diagnosis and prognosis of breast carcinoma. Tissue microarray (TMA) technique is a high throughput technique which provides a standardized set of images which are uniformly stained, facilitating effective automation of the evaluation of the specimen images. TMA technique is widely used to evaluate hormone expression for diagnosis of breast cancer. If one considers the time taken for each of the steps in the tissue microarray process workflow, it can be observed that the maximum amount of time is taken by the analysis step. Hence, automated analysis will significantly reduce the overall time required to complete the study. Many tools are available for automated digital acquisition of images of the spots from the microarray slide. Each of these images needs to be evaluated by a pathologist to assign a score based on the staining intensity to represent the hormone expression, to classify them into negative or positive cases. Our work aims to develop a system for automated evaluation of sets of images generated through tissue microarray technique, representing the ER expression images and HER-2/neu expression images. Our study is based on the Tissue Microarray Database portal of Stanford university at http://tma.stanford.edu/cgi-bin/cx?n=her1, which has made huge number of images available to researchers. We used 171 images corresponding to ER expression and 214 images corresponding to HER-2/neu expression of breast carcinoma. Out of the 171 images corresponding to ER expression, 104 were negative and 67 were representing positive cases. Out of the 214 images corresponding to HER-2/neu expression, 112 were negative and 102 were representing positive cases. Our method has 92.31% sensitivity and 93.18% specificity for ER expression image classification and 96.67% sensitivity and 88.24% specificity for HER-2/neu expression image classification.

乳腺癌是第二常见的人类肿瘤,约占女性癌症的四分之一,仅次于宫颈癌。雌激素受体(ER)、孕激素受体(Progesteron receptor)和人表皮生长因子受体(HER-2/neu)的表达在乳腺癌的诊断和预后中起重要作用。组织微阵列(TMA)技术是一种高通量技术,它提供了一组均匀染色的标准化图像,促进了标本图像评估的有效自动化。TMA技术被广泛用于评估乳腺癌的激素表达。如果考虑组织微阵列处理工作流程中每个步骤所花费的时间,可以观察到分析步骤所花费的时间最多。因此,自动化分析将显著减少完成研究所需的总时间。许多工具可用于自动数字采集微阵列载玻片上斑点的图像。每一张图像都需要由病理学家评估,根据染色强度分配一个分数来代表激素表达,将它们分为阴性或阳性病例。我们的工作旨在开发一个系统,用于自动评估通过组织微阵列技术生成的图像集,代表ER表达图像和HER-2/ new表达图像。我们的研究基于斯坦福大学的组织微阵列数据库门户网站http://tma.stanford.edu/cgi-bin/cx?n=her1,该网站为研究人员提供了大量的图像。我们使用了171张与ER表达相对应的图像,214张与HER-2/neu表达相对应的图像。在171张与ER表达相对应的图像中,104张为阴性,67张为阳性。在214张HER-2/neu表达的图像中,112张为阴性,102张为阳性。该方法对ER表达图像分类的灵敏度为92.31%,特异性为93.18%;对HER-2/neu表达图像分类的灵敏度为96.67%,特异性为88.24%。
{"title":"Datamining approach for automation of diagnosis of breast cancer in immunohistochemically stained tissue microarray images.","authors":"Keerthana Prasad,&nbsp;Bernhard Zimmermann,&nbsp;Gopalakrishna Prabhu,&nbsp;Muktha Pai","doi":"10.2174/1874431101004010086","DOIUrl":"https://doi.org/10.2174/1874431101004010086","url":null,"abstract":"<p><p>Cancer of the breast is the second most common human neoplasm, accounting for approximately one quarter of all cancers in females after cervical carcinoma. Estrogen receptor (ER), Progesteron receptor and human epidermal growth factor receptor (HER-2/neu) expressions play an important role in diagnosis and prognosis of breast carcinoma. Tissue microarray (TMA) technique is a high throughput technique which provides a standardized set of images which are uniformly stained, facilitating effective automation of the evaluation of the specimen images. TMA technique is widely used to evaluate hormone expression for diagnosis of breast cancer. If one considers the time taken for each of the steps in the tissue microarray process workflow, it can be observed that the maximum amount of time is taken by the analysis step. Hence, automated analysis will significantly reduce the overall time required to complete the study. Many tools are available for automated digital acquisition of images of the spots from the microarray slide. Each of these images needs to be evaluated by a pathologist to assign a score based on the staining intensity to represent the hormone expression, to classify them into negative or positive cases. Our work aims to develop a system for automated evaluation of sets of images generated through tissue microarray technique, representing the ER expression images and HER-2/neu expression images. Our study is based on the Tissue Microarray Database portal of Stanford university at http://tma.stanford.edu/cgi-bin/cx?n=her1, which has made huge number of images available to researchers. We used 171 images corresponding to ER expression and 214 images corresponding to HER-2/neu expression of breast carcinoma. Out of the 171 images corresponding to ER expression, 104 were negative and 67 were representing positive cases. Out of the 214 images corresponding to HER-2/neu expression, 112 were negative and 102 were representing positive cases. Our method has 92.31% sensitivity and 93.18% specificity for ER expression image classification and 96.67% sensitivity and 88.24% specificity for HER-2/neu expression image classification.</p>","PeriodicalId":88331,"journal":{"name":"The open medical informatics journal","volume":" ","pages":"86-93"},"PeriodicalIF":0.0,"publicationDate":"2010-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/2d/03/TOMINFOJ-4-86.PMC3095117.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40090161","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Region quad-tree decomposition based edge detection for medical images. 基于区域四叉树分解的医学图像边缘检测。
Pub Date : 2010-05-28 DOI: 10.2174/1874431101004020050
Sumeet Dua, Naveen Kandiraju, Pradeep Chowriappa

Edge detection in medical images has generated significant interest in the medical informatics community, especially in recent years. With the advent of imaging technology in biomedical and clinical domains, the growth in medical digital images has exceeded our capacity to analyze and store them for efficient representation and retrieval, especially for data mining applications. Medical decision support applications frequently demand the ability to identify and locate sharp discontinuities in an image for feature extraction and interpretation of image content, which can then be exploited for decision support analysis. However, due to the inherent high dimensional nature of the image content and the presence of ill-defined edges, edge detection using classical procedures is difficult, if not impossible, for sensitive and specific medical informatics-based discovery. In this paper, we propose a new edge detection technique based on the regional recursive hierarchical decomposition using quadtree and post-filtration of edges using a finite difference operator. We show that in medical images of common origin, focal and/or penumbral blurred edges can be characterized by an estimable intensity gradient. This gradient can further be used for dismissing false alarms. A detailed validation and comparison with related works on diabetic retinopathy images and CT scan images show that the proposed approach is efficient and accurate.

医学图像的边缘检测在医学信息学社区引起了极大的兴趣,特别是在最近几年。随着成像技术在生物医学和临床领域的出现,医学数字图像的增长已经超过了我们分析和存储它们以进行有效表示和检索的能力,特别是对于数据挖掘应用。医疗决策支持应用程序经常要求能够识别和定位图像中的明显不连续性,以便提取图像内容的特征和解释,然后可以利用这些特征进行决策支持分析。然而,由于图像内容固有的高维性质和存在不明确的边缘,使用经典程序进行边缘检测对于敏感和特定的基于医学信息学的发现是困难的,如果不是不可能的话。本文提出了一种基于四叉树区域递归分层分解和有限差分算子边缘后滤波的边缘检测方法。我们表明,在医学图像的共同起源,焦点和/或半影模糊的边缘可以表征一个可估计的强度梯度。这个梯度可以进一步用于排除假警报。通过对糖尿病视网膜病变图像和CT扫描图像的详细验证和比较,表明了该方法的有效性和准确性。
{"title":"Region quad-tree decomposition based edge detection for medical images.","authors":"Sumeet Dua,&nbsp;Naveen Kandiraju,&nbsp;Pradeep Chowriappa","doi":"10.2174/1874431101004020050","DOIUrl":"https://doi.org/10.2174/1874431101004020050","url":null,"abstract":"<p><p>Edge detection in medical images has generated significant interest in the medical informatics community, especially in recent years. With the advent of imaging technology in biomedical and clinical domains, the growth in medical digital images has exceeded our capacity to analyze and store them for efficient representation and retrieval, especially for data mining applications. Medical decision support applications frequently demand the ability to identify and locate sharp discontinuities in an image for feature extraction and interpretation of image content, which can then be exploited for decision support analysis. However, due to the inherent high dimensional nature of the image content and the presence of ill-defined edges, edge detection using classical procedures is difficult, if not impossible, for sensitive and specific medical informatics-based discovery. In this paper, we propose a new edge detection technique based on the regional recursive hierarchical decomposition using quadtree and post-filtration of edges using a finite difference operator. We show that in medical images of common origin, focal and/or penumbral blurred edges can be characterized by an estimable intensity gradient. This gradient can further be used for dismissing false alarms. A detailed validation and comparison with related works on diabetic retinopathy images and CT scan images show that the proposed approach is efficient and accurate.</p>","PeriodicalId":88331,"journal":{"name":"The open medical informatics journal","volume":"4 ","pages":"50-7"},"PeriodicalIF":0.0,"publicationDate":"2010-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2174/1874431101004020050","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"29176047","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Anamneses-Based Internet Information Supply: Can a Combination of an Expert System and Meta-Search Engine Help Consumers find the Health Information they Require? 基于自述的互联网信息供应:专家系统与元搜索引擎的结合能否帮助消费者找到所需的健康信息?
Pub Date : 2010-04-09 DOI: 10.2174/1874431101004010012
Wilfried Honekamp, Herwig Ostermann

An increasing number of people search for health information online. During the last 10 years various researchers have determined the requirements for an ideal consumer health information system. The aim of this study was to figure out, whether medical laymen can find a more accurate diagnosis for a given anamnesis via the developed prototype health information system than via ordinary internet search.In a randomized controlled trial, the prototype information system was evaluated by the assessment of two sample cases. Participants had to determine the diagnosis of a patient with a headache via information found searching the web. A patient's history sheet and a computer with internet access were provided to the participants and they were guided through the study by an especially designed study website. The intervention group used the prototype information system; the control group used common search engines and portals. The numbers of correct diagnoses in each group were compared.A total of 140 (60/80) participants took part in two study sections. In the first case, which determined a common diagnosis, both groups did equally well. In the second section, which determined a less common and more complex case, the intervention group did significantly better (P=0.031) due to the tailored information supply.Using medical expert systems in combination with a portal searching meta-search engine represents a feasible strategy to provide reliable patient-tailored information and can ultimately contribute to patient safety with respect to information found via the internet.

越来越多的人在网上搜索健康信息。在过去的 10 年中,不同的研究人员已经确定了理想的消费者健康信息系统的要求。这项研究的目的是要弄清,与普通的互联网搜索相比,医学门外汉是否能通过开发的原型健康信息系统为给定的病症找到更准确的诊断。参与者必须通过网络搜索到的信息确定一位头痛患者的诊断。我们向参与者提供了一份患者病历表和一台可上网的电脑,并通过专门设计的研究网站指导他们完成研究。干预组使用原型信息系统;对照组使用普通搜索引擎和门户网站。共有 140 人(60/80)参加了两个研究部分。在确定常见诊断的第一部分中,两组的表现不相上下。在第二部分中,由于提供了量身定制的信息,干预组的表现明显更好(P=0.031)。将医学专家系统与门户网站搜索元搜索引擎结合使用,是提供可靠的、为患者量身定制的信息的可行策略,并能最终促进患者在互联网信息方面的安全。
{"title":"Anamneses-Based Internet Information Supply: Can a Combination of an Expert System and Meta-Search Engine Help Consumers find the Health Information they Require?","authors":"Wilfried Honekamp, Herwig Ostermann","doi":"10.2174/1874431101004010012","DOIUrl":"10.2174/1874431101004010012","url":null,"abstract":"<p><p>An increasing number of people search for health information online. During the last 10 years various researchers have determined the requirements for an ideal consumer health information system. The aim of this study was to figure out, whether medical laymen can find a more accurate diagnosis for a given anamnesis via the developed prototype health information system than via ordinary internet search.In a randomized controlled trial, the prototype information system was evaluated by the assessment of two sample cases. Participants had to determine the diagnosis of a patient with a headache via information found searching the web. A patient's history sheet and a computer with internet access were provided to the participants and they were guided through the study by an especially designed study website. The intervention group used the prototype information system; the control group used common search engines and portals. The numbers of correct diagnoses in each group were compared.A total of 140 (60/80) participants took part in two study sections. In the first case, which determined a common diagnosis, both groups did equally well. In the second section, which determined a less common and more complex case, the intervention group did significantly better (P=0.031) due to the tailored information supply.Using medical expert systems in combination with a portal searching meta-search engine represents a feasible strategy to provide reliable patient-tailored information and can ultimately contribute to patient safety with respect to information found via the internet.</p>","PeriodicalId":88331,"journal":{"name":"The open medical informatics journal","volume":"4 ","pages":"12-20"},"PeriodicalIF":0.0,"publicationDate":"2010-04-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/98/a5/TOMINFOJ-4-12.PMC2874219.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"29016770","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nip, tuck and click: medical tourism and the emergence of web-based health information. 小结、修饰和点击:医疗旅游和网络健康信息的出现。
Pub Date : 2010-02-12 DOI: 10.2174/1874431101004010001
Neil Lunt, Mariann Hardey, Russell Mannion

An emerging trend is what has become commonly known as 'Medical Tourism' where patients travel to overseas destinations for specialised surgical treatments and other forms of medical care. With the rise of more affordable cross-border travel and rapid technological developments these movements are becoming more commonplace. A key driver is the platform provided by the internet for gaining access to healthcare information and advertising. There has been relatively little attention given to the role and impact of web-based information to inform Medical Tourism decisions.This article provides a brief overview of the most recent development in Medical Tourism and examines how this is linked to the emergence of specialized internet web sites. It produces a summary of the functionality of medical tourist sites, and situates Medical Tourism informatics within the broader literatures relating to information search, information quality and decision-making.This paper is both a call to strengthen the empirical evidence in this area, and also to advocate integrating Medical Tourism research within a broader conceptual framework.

医疗旅游 "是一种新兴趋势,患者前往海外目的地接受专业手术治疗和其他形式的医疗护理。随着更经济实惠的跨境旅行的兴起和技术的飞速发展,这些活动正变得越来越普遍。互联网提供的获取医疗保健信息和广告的平台是一个关键驱动因素。本文简要概述了医疗旅游的最新发展,并探讨了这与专业互联网网站的出现之间的联系。本文对医疗旅游网站的功能进行了总结,并将医疗旅游信息学置于与信息搜索、信息质量和决策相关的更广泛的文献中。本文既呼吁加强该领域的实证研究,也提倡将医疗旅游研究纳入更广泛的概念框架中。
{"title":"Nip, tuck and click: medical tourism and the emergence of web-based health information.","authors":"Neil Lunt, Mariann Hardey, Russell Mannion","doi":"10.2174/1874431101004010001","DOIUrl":"10.2174/1874431101004010001","url":null,"abstract":"<p><p>An emerging trend is what has become commonly known as 'Medical Tourism' where patients travel to overseas destinations for specialised surgical treatments and other forms of medical care. With the rise of more affordable cross-border travel and rapid technological developments these movements are becoming more commonplace. A key driver is the platform provided by the internet for gaining access to healthcare information and advertising. There has been relatively little attention given to the role and impact of web-based information to inform Medical Tourism decisions.This article provides a brief overview of the most recent development in Medical Tourism and examines how this is linked to the emergence of specialized internet web sites. It produces a summary of the functionality of medical tourist sites, and situates Medical Tourism informatics within the broader literatures relating to information search, information quality and decision-making.This paper is both a call to strengthen the empirical evidence in this area, and also to advocate integrating Medical Tourism research within a broader conceptual framework.</p>","PeriodicalId":88331,"journal":{"name":"The open medical informatics journal","volume":"4 ","pages":"1-11"},"PeriodicalIF":0.0,"publicationDate":"2010-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/0f/a2/TOMINFOJ-4-1.PMC2874214.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"29029036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Association rule based similarity measures for the clustering of gene expression data. 基于关联规则的基因表达数据聚类相似性度量。
Pub Date : 2010-01-01 Epub Date: 2010-05-28 DOI: 10.2174/1874431101004010063
Prerna Sethi, Sathya Alagiriswamy

In life threatening diseases, such as cancer, where the effective diagnosis includes annotation, early detection, distinction, and prediction, data mining and statistical approaches offer the promise for precise, accurate, and functionally robust analysis of gene expression data. The computational extraction of derived patterns from microarray gene expression is a non-trivial task that involves sophisticated algorithm design and analysis for specific domain discovery. In this paper, we have proposed a formal approach for feature extraction by first applying feature selection heuristics based on the statistical impurity measures, the Gini Index, Max Minority, and the Twoing Rule and obtaining the top 100-400 genes. We then analyze the associative dependencies between the genes and assign weights to the genes based on their degree of participation in the rules. Consequently, we present a weighted Jaccard and vector cosine similarity measure to compute the similarity between the discovered rules. Finally, we group the rules by applying hierarchical clustering. To demonstrate the usability and efficiency of the concept of our technique, we applied it to three publicly available, multiclass cancer gene expression datasets and performed a biomedical literature search to support the effectiveness of our results.

在威胁生命的疾病中,如癌症,有效的诊断包括注释、早期检测、区分和预测,数据挖掘和统计方法为精确、准确和功能强大的基因表达数据分析提供了希望。从微阵列基因表达中计算提取衍生模式是一项非常重要的任务,涉及复杂的算法设计和特定区域发现的分析。在本文中,我们提出了一种正式的特征提取方法,首先应用基于统计杂质度量、基尼指数、最大少数派和Twoing规则的特征选择启发式方法,获得前100-400个基因。然后,我们分析基因之间的关联依赖关系,并根据基因在规则中的参与程度为其分配权重。因此,我们提出了加权Jaccard和向量余弦相似度度量来计算所发现规则之间的相似度。最后,采用层次聚类对规则进行分组。为了证明我们技术概念的可用性和效率,我们将其应用于三个公开可用的多类别癌症基因表达数据集,并进行生物医学文献检索以支持我们结果的有效性。
{"title":"Association rule based similarity measures for the clustering of gene expression data.","authors":"Prerna Sethi,&nbsp;Sathya Alagiriswamy","doi":"10.2174/1874431101004010063","DOIUrl":"https://doi.org/10.2174/1874431101004010063","url":null,"abstract":"<p><p>In life threatening diseases, such as cancer, where the effective diagnosis includes annotation, early detection, distinction, and prediction, data mining and statistical approaches offer the promise for precise, accurate, and functionally robust analysis of gene expression data. The computational extraction of derived patterns from microarray gene expression is a non-trivial task that involves sophisticated algorithm design and analysis for specific domain discovery. In this paper, we have proposed a formal approach for feature extraction by first applying feature selection heuristics based on the statistical impurity measures, the Gini Index, Max Minority, and the Twoing Rule and obtaining the top 100-400 genes. We then analyze the associative dependencies between the genes and assign weights to the genes based on their degree of participation in the rules. Consequently, we present a weighted Jaccard and vector cosine similarity measure to compute the similarity between the discovered rules. Finally, we group the rules by applying hierarchical clustering. To demonstrate the usability and efficiency of the concept of our technique, we applied it to three publicly available, multiclass cancer gene expression datasets and performed a biomedical literature search to support the effectiveness of our results.</p>","PeriodicalId":88331,"journal":{"name":"The open medical informatics journal","volume":" ","pages":"63-73"},"PeriodicalIF":0.0,"publicationDate":"2010-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.2174/1874431101004010063","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40101162","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 16
期刊
The open medical informatics journal
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1