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Discovery of potent measles virus fusion inhibitor peptides via structure-guided derivatization†
IF 3.597 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2025-01-24 DOI: 10.1039/D4MD01006J
Ziwei Gao, Jiei Sasaki, Tateki Suzuki, Tomoaki Suzuki, Yuki Miwa, Shinsuke Sando, Takao Hashiguchi and Jumpei Morimoto

Fusion inhibitor peptide (FIP), a short peptide known as a measles virus (MeV) infection inhibitor, inhibits membrane fusion between the viral envelope of MeV and the host cell membrane. Therefore, FIP is potentially useful as a drug candidate for treating MeV infection, but improvement of inhibitory activity is desirable. In this study, we conducted a structure–activity relationship study of FIP and, based on the result and the previously reported crystal structure of the complex, we designed FIP derivatives. From a series of derivatives, we discovered an FIP derivative with a strong inhibitory activity (IC50 = 210 nM) derived from the enhanced binding affinity (KD = 6.6 nM) to the MeV fusion protein.

{"title":"Discovery of potent measles virus fusion inhibitor peptides via structure-guided derivatization†","authors":"Ziwei Gao, Jiei Sasaki, Tateki Suzuki, Tomoaki Suzuki, Yuki Miwa, Shinsuke Sando, Takao Hashiguchi and Jumpei Morimoto","doi":"10.1039/D4MD01006J","DOIUrl":"10.1039/D4MD01006J","url":null,"abstract":"<p >Fusion inhibitor peptide (FIP), a short peptide known as a measles virus (MeV) infection inhibitor, inhibits membrane fusion between the viral envelope of MeV and the host cell membrane. Therefore, FIP is potentially useful as a drug candidate for treating MeV infection, but improvement of inhibitory activity is desirable. In this study, we conducted a structure–activity relationship study of FIP and, based on the result and the previously reported crystal structure of the complex, we designed FIP derivatives. From a series of derivatives, we discovered an FIP derivative with a strong inhibitory activity (IC<small><sub>50</sub></small> = 210 nM) derived from the enhanced binding affinity (<em>K</em><small><sub>D</sub></small> = 6.6 nM) to the MeV fusion protein.</p>","PeriodicalId":88,"journal":{"name":"MedChemComm","volume":" 4","pages":" 1619-1625"},"PeriodicalIF":3.597,"publicationDate":"2025-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11799930/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143383214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Expanding the chemical space for antiviral discovery: the potential of twistenediones†
IF 3.597 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2025-01-22 DOI: 10.1039/D4MD00891J
Aida Jaafar, Daniel Guerra-González, Ana Pascual, Ana M. Ortuño, Carlos M. Cruz, Juan M. Cuerva, Paula Bueno, Victoria Castro, Urtzi Garaigorta, Pablo Gastaminza, Javier Adrio and María Ribagorda

Despite significant progress in drug discovery, there remains an urgent need to identify new structures capable of targeting drug-resistant diseases, as well as novel pathogens, to address the growing challenges in global health. This work highlights the underexplored potential of twistane-like structures as promising candidates for drug development, particularly as antiviral agents. We provide the first comprehensive study of their antiviral activity, in particular against SARS-CoV-2. We report the synthesis of a family of chiral indolyl-twistenediones, with the separation and characterization of both enantiomers via chiral semipreparative HPLC. The absolute configurations were determined using experimental and theoretical ECD techniques, supported by DFT calculations. A detailed biological study of their antiviral activity against various pathogenic RNA viruses demonstrates selective efficacy against members of the Coronaviridae family, specifically targeting a post-entry step in the viral replication cycle. Further investigation revealed a remarkable chiral distinction in the antiviral activity between the two enantiomers, opening new avenues for research in the 3D space of chiral cage compounds.

{"title":"Expanding the chemical space for antiviral discovery: the potential of twistenediones†","authors":"Aida Jaafar, Daniel Guerra-González, Ana Pascual, Ana M. Ortuño, Carlos M. Cruz, Juan M. Cuerva, Paula Bueno, Victoria Castro, Urtzi Garaigorta, Pablo Gastaminza, Javier Adrio and María Ribagorda","doi":"10.1039/D4MD00891J","DOIUrl":"10.1039/D4MD00891J","url":null,"abstract":"<p >Despite significant progress in drug discovery, there remains an urgent need to identify new structures capable of targeting drug-resistant diseases, as well as novel pathogens, to address the growing challenges in global health. This work highlights the underexplored potential of twistane-like structures as promising candidates for drug development, particularly as antiviral agents. We provide the first comprehensive study of their antiviral activity, in particular against SARS-CoV-2. We report the synthesis of a family of chiral indolyl-twistenediones, with the separation and characterization of both enantiomers <em>via</em> chiral semipreparative HPLC. The absolute configurations were determined using experimental and theoretical ECD techniques, supported by DFT calculations. A detailed biological study of their antiviral activity against various pathogenic RNA viruses demonstrates selective efficacy against members of the <em>Coronaviridae</em> family, specifically targeting a post-entry step in the viral replication cycle. Further investigation revealed a remarkable chiral distinction in the antiviral activity between the two enantiomers, opening new avenues for research in the 3D space of chiral cage compounds.</p>","PeriodicalId":88,"journal":{"name":"MedChemComm","volume":" 4","pages":" 1626-1632"},"PeriodicalIF":3.597,"publicationDate":"2025-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11803301/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143383140","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biocompatible glycolipid derived from bhilawanol as an antibiofilm agent and a promising platform for drug delivery†
IF 3.597 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2025-01-21 DOI: 10.1039/D4MD00828F
Tohira Banoo, Abhijit Ghosh, Priyasha Mishra, Sanhita Roy and Subbiah Nagarajan

Stimuli-responsive smart materials for biomedical applications have gained significant attention because of their potential for selectivity and sensitivity in biological systems. Even though ample stimuli-responsive materials are available, the use of traditional Ayurvedic compounds in the fabrication of pharmaceuticals is limited. Among various materials, gels are one of the essential classes because of their molecular-level tunability with little effort from the environment. In this study, we report a simple synthesis method for multifunctional glycolipids using a starting material derived from biologically significant natural molecules and carbohydrates in good yields. The synthesized glycolipids were prone to form a hydrogel by creating a 3D fibrous architecture. The mechanism of bottom-up assembly involving the molecular-level interaction was studied in detail using SEM, XRD, FTIR, and NMR spectroscopy. The stability, processability, and thixotropic behavior of the hydrogel were investigated through rheological measurements, and it was identified to be more suitable for biomedical applications. To evaluate the potential application of the self-assembled hydrogel in the field of medicine, we encapsulated a natural drug, curcumin, into a gel and studied its pH as a stimuli-responsive release profile. Interestingly, the encapsulated drug was released both in acidic and basic pH levels at a different rate, as identified using UV-vis spectroscopy. It is worth mentioning that the gelator used for fabricating smart soft materials displays significant potential in selectively compacting the biofilm formed by Streptococcus pneumoniae. We believe that the reported multifunctional hydrogel derived from bhilawanol-based glycolipid holds great promise in medicine.

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引用次数: 0
A perspective on small molecules targeting the renin–angiotensin–aldosterone system and their utility in cardiovascular diseases: exploring the structural insights for rational drug discovery and development
IF 3.597 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2025-01-21 DOI: 10.1039/D4MD00720D
Nisha Bansal, Deepika Kathuria, Arockia M. Babu, Sonia Dhiman, Sorabh Lakhanpal, K. Nagendra Prasad, Roshan Kumar, Yogita Tyagi, Bhupinder Kumar, Mahendra Pratap Singh and Abhay M. Gaidhane

Renin–angiotensin–aldosterone system (RAAS) is crucial in cardiovascular homeostasis. Any disruption in this homeostasis often leads to numerous cardiovascular diseases (CVDs) and non-cardiovascular diseases. Small molecules that show ability toward mechanically modulating RAAS components have been developed to address this problem, thus providing opportunities for innovative drug discovery and development. This review is put forth to provide a comprehensive understanding not only on the signaling mechanisms of RAAS that lead to cardiovascular events but also on the use of small molecules targeting the modulation of RAAS components. Further, the detailed descriptions of the drugs affecting the RAAS and their pharmacodynamics, kinetics, and metabolism profiles are provided. This article also covers the limitations of the present therapeutic armory, followed by their mechanistic insights. A brief discussion is offered on the analysis of the chemical space parameters of the drugs affecting RAAS compared to other cardiovascular and renal categories of medications approved by the US FDA. This review provides structural insights and emphasizes the importance of integrating the current therapeutic regimen with pharmacological tactics to accelerate the development of new therapeutics targeting the RAAS components for improved and efficacious cardiovascular outcomes. Finally, chemical spacing parameters of RAAS modulators are provided, which will help in understanding their peculiarities in modulating the RAAS signaling through structural and functional analyses. Furthermore, this review will assist medicinal chemists working in this field in developing better drug regimens with improved selectivity and efficacy.

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引用次数: 0
N-Glycidyl d-tryptophan ether-based ointment with anti-infective, anti-inflammatory, and wound-healing properties†
IF 3.597 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2025-01-20 DOI: 10.1039/D4MD00878B
Denial Mahata, Malabendu Jana, Suresh K. Mondal, Sounik Manna, Arundhuti Jana, Anirban Chakraborty, Ananta K. Ghosh, Ranadhir Chakraborty, Tapas K. Hazra and Santi M. Mandal

Anti-infective hydrogel is an emerging and innovative material used as an antibacterial ointment or to coat medical devices. Here, we synthesized a novel derivative of N-glycidyl D-tryptophan ether using the D-isoform of tryptophan through a ring-opening polymerization reaction. The compound was characterized using gel permeation chromatography (GPC), HPLC, 1H NMR, 13C NMR, MALDI-TOF-MS, and FTIR spectroscopy. The results demonstrated its antibacterial activity by inhibiting quorum sensing and subsequent biofilm formation. In vivo studies revealed the ability of the compound to promote wound healing by reducing inflammatory cytokine levels, such as tumor necrosis factor alpha, interleukin-1β, and IL-6. Moreover, the compound showed antioxidant activity by scavenging the DPPH radical due to the presence of polymeric hydroxyl acidic protons near the nitrogen. Since inflammation prompted ROS-initiated DNA strand breaks, it was also confirmed that the compound could reduce DNA strand break accumulation, as demonstrated through testing against bleomycin-induced DNA strand break accumulation. Therefore, the synthesized compound, which could be used as a base material for ointments, was found to be effective for antibacterial and wound healing actions by (a) inhibiting biofilm formation by bacteria, (b) reducing the expression of inflammatory cytokines, and (c) preventing the accumulation of DNA strand breaks through free-radical scavenging activity.

{"title":"N-Glycidyl d-tryptophan ether-based ointment with anti-infective, anti-inflammatory, and wound-healing properties†","authors":"Denial Mahata, Malabendu Jana, Suresh K. Mondal, Sounik Manna, Arundhuti Jana, Anirban Chakraborty, Ananta K. Ghosh, Ranadhir Chakraborty, Tapas K. Hazra and Santi M. Mandal","doi":"10.1039/D4MD00878B","DOIUrl":"10.1039/D4MD00878B","url":null,"abstract":"<p >Anti-infective hydrogel is an emerging and innovative material used as an antibacterial ointment or to coat medical devices. Here, we synthesized a novel derivative of <em>N</em>-glycidyl <small>D</small>-tryptophan ether using the <small>D</small>-isoform of tryptophan through a ring-opening polymerization reaction. The compound was characterized using gel permeation chromatography (GPC), HPLC, <small><sup>1</sup></small>H NMR, <small><sup>13</sup></small>C NMR, MALDI-TOF-MS, and FTIR spectroscopy. The results demonstrated its antibacterial activity by inhibiting quorum sensing and subsequent biofilm formation. <em>In vivo</em> studies revealed the ability of the compound to promote wound healing by reducing inflammatory cytokine levels, such as tumor necrosis factor alpha, interleukin-1β, and IL-6. Moreover, the compound showed antioxidant activity by scavenging the DPPH radical due to the presence of polymeric hydroxyl acidic protons near the nitrogen. Since inflammation prompted ROS-initiated DNA strand breaks, it was also confirmed that the compound could reduce DNA strand break accumulation, as demonstrated through testing against bleomycin-induced DNA strand break accumulation. Therefore, the synthesized compound, which could be used as a base material for ointments, was found to be effective for antibacterial and wound healing actions by (a) inhibiting biofilm formation by bacteria, (b) reducing the expression of inflammatory cytokines, and (c) preventing the accumulation of DNA strand breaks through free-radical scavenging activity.</p>","PeriodicalId":88,"journal":{"name":"MedChemComm","volume":" 4","pages":" 1729-1739"},"PeriodicalIF":3.597,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143399958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of benzofuran-derived sulfamates as dual aromatase-steroid sulfatase inhibitors (DASIs): design, synthesis and biological evaluation†
IF 3.597 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2025-01-09 DOI: 10.1039/D4MD00795F
Ahmed G. Eissa, Francesca Gozzi, Oqab Aloqab, Charlotte E. Parrish, Nadira Mohamed, Irene Shiali, Harith Al-Baldawi, Paul A. Foster and Claire Simons

Resistance of oestrogen receptor-positive (ER+) breast cancer, the most prevalent type of breast cancer accounting for ∼70% of all cases, to current therapies necessitates the study of alternative strategies. One promising strategy is the multi-targeting approach using dual aromatase-steroid sulfatase inhibitors (DASIs). Herein, we describe the development of DASIs using a common benzofuran pharmacophore. Triazole benzofuran sulfamates were found to have low nM aromatase (Arom) inhibitory activity but no steroid sulfatase (STS) inhibitory activity (IC50 > 10 μM); by contrast, benzofuran ketone sulfamates demonstrated low nM STS inhibitory activity but no Arom inhibitory activity (IC50 > 1 μM). The addition of a methyl group at the 3rd position of the benzofuran ring in the benzofuran ketone sulfamate 19 (R1 = CH3) had a notable effect, resulting in dual aromatase and STS inhibitory activities with the 4-chloro derivative 19b (Arom IC50 = 137 nM, STS IC50 = 48 nM) and 4-methoxy derivative 19e (Arom IC50 = 35 nM, STS IC50 = 164 nM) optimal for dual inhibition. Arom/STS inhibition results combined with molecular dynamics studies provided a clear rationale for the activity observed.

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引用次数: 0
Breaking the energy chain: importance of ATP synthase in Mycobacterium tuberculosis and its potential as a drug target 打破能量链:ATP合酶在结核分枝杆菌中的重要性及其作为药物靶点的潜力。
IF 3.597 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2025-01-08 DOI: 10.1039/D4MD00829D
Summaya Perveen, Sunny Pal and Rashmi Sharma

Unveiling novel pathways for drug discovery forms the foundation of a new era in the combat against tuberculosis. The discovery of a novel drug, bedaquiline, targeting mycobacterial ATP synthase highlighted the targetability of the energy metabolism pathway. The significant potency of bedaquiline against heterogeneous population of Mycobacterium tuberculosis marks ATP synthase as an important complex of the electron transport chain. This review focuses on the importance and unique characteristics of mycobacterial ATP synthase. Understanding these distinctions enables the targeting of ATP synthase subunits for drug discovery, without aiming at the mammalian counterpart. Furthermore, a brief comparison of the structural differences between mycobacterial and mitochondrial ATP synthase is discussed. Being a complex multi-subunit protein, ATP synthase offers multiple sites for potential inhibitors, including the a, c, ε, γ, and δ subunits. Inhibitors targeting these subunits are critically reviewed, providing insight into the design of better and more potent chemical entities with the potential for effective treatment regimens.

揭示药物发现的新途径构成了抗击结核病新时代的基础。一种靶向分枝杆菌ATP合成酶的新药贝达喹啉的发现突出了能量代谢途径的靶向性。贝达喹啉对结核分枝杆菌异种群体的显著效力表明ATP合酶是电子传递链的重要复合物。本文就分枝杆菌ATP合酶的重要性及其独特的特性作一综述。了解这些区别可以使ATP合酶亚基成为药物发现的靶标,而无需针对哺乳动物。此外,简要比较了分枝杆菌和线粒体ATP合酶的结构差异进行了讨论。作为一种复杂的多亚基蛋白,ATP合酶为潜在的抑制剂提供了多个位点,包括a, c, ε, γ和δ亚基。针对这些亚基的抑制剂进行了严格的审查,为设计更好,更有效的化学实体提供了见解,具有有效治疗方案的潜力。
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引用次数: 0
Saponin components exhibit antiviral properties against porcine epidemic diarrhea virus in vitro 皂苷成分对猪流行性腹泻病毒具有体外抗病毒作用。
IF 3.597 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2025-01-08 DOI: 10.1039/D4MD00894D
Yiyi Hu, Yunchuan Li, Haodan Zhu, Dandan Wang, Junming Zhou and Bin Li

Piglets afflicted with porcine epidemic diarrhea virus (PEDV) experience severe diarrhea and elevated death rates, leading to substantial financial losses in the pig farming sector. The objective of this study is to investigate the impact of saponins on PEDV within Vero cells by utilizing different methodologies to evaluate their anti-PEDV effect. By producing 40 saponins, we have discovered that No. 29, No. 31, No. 35, and No. 38 exhibit properties that make them effective against PEDV, serving as potential drugs. The findings showed that in a clear dose-dependent manner, the mRNA levels of PEDV were significantly inhibited in the high, middle, and low-dose groups of No. 29, No. 31, No. 35, and No. 38, when compared to the PEDV control. The four tested saponins significantly inhibited the levels of PEDV N contents and viral titers. Furthermore, concentration of cytotoxicity 50% (CC50) values for No. 29, No. 31, No. 35, and No. 38 saponins were 37.13 μM, 52.86 μM, 44.98 μM, and 43.81 μM, respectively, demonstrating the safety of these medications in clinical environments. Collectively, these findings indicate that the four examined saponins could efficiently modulate the immune response against PEDV and hold promise for utilization in antiviral treatments.

感染猪流行性腹泻病毒(PEDV)的仔猪会出现严重腹泻和死亡率升高,导致养猪业遭受重大经济损失。本研究的目的是通过使用不同的方法来评估皂苷对Vero细胞内PEDV的影响。通过生产40种皂苷,我们发现29号、31号、35号和38号表现出对PEDV有效的特性,可以作为潜在的药物。结果显示,与PEDV对照组相比,No. 29、No. 31、No. 35、No. 38高、中、低剂量组PEDV mRNA水平均明显受到抑制,且呈明显的剂量依赖性。4种皂苷均能显著抑制PEDV N含量和病毒滴度。29号、31号、35号和38号皂苷的细胞毒性50% (CC50)浓度分别为37.13 μM、52.86 μM、44.98 μM和43.81 μM,表明其在临床环境下是安全的。总的来说,这些发现表明,四种被检测的皂苷可以有效地调节对PEDV的免疫反应,并有望用于抗病毒治疗。
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引用次数: 0
Exploration of the cytotoxic and microtubule disruption potential of novel imidazo[1,5-a]pyridine-based chalcones† 新型咪唑[1,5-a]吡啶查尔酮的细胞毒性和微管破坏潜力的探索。
IF 3.597 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2025-01-08 DOI: 10.1039/D4MD00838C
Ramu Gopathi, Mommuleti Pradeep Kumar, Gangasani Jagadeesh Kumar, Syamprasad N. P., Bheeshma Geetanjali Kodiripaka, V. G. M. Naidu and Bathini Nagendra Babu

In continuation of our efforts to develop new anticancer compounds, a new series of imidazo[1,5-a]pyridine-chalcone derivatives was designed, synthesized, characterized, and evaluated for its cytotoxicity against five human cancer cell lines, i.e., breast (MDA-MB-231), colon (RKO), bone (Mg-63), prostate (PC-3), and liver (HepG2) cell lines, as well as a normal cell line (HEK). Among the synthesized compounds, two exhibited promising cytotoxicity against the MDA-MB-231 cell line with IC50 values of 4.23 ± 0.25 μM and 3.26 ± 0.56 μM. We also studied apoptotic induction of the compounds using annexin V-FITC/PI staining, and ROS-mediated mitochondrial damage was elucidated using DCFDA, followed by JC-1 staining. The potential activity of the compounds was further confirmed by immuno-fluorescence and molecular docking studies, which revealed the anticancer activity of active compounds through binding and microtubule disruption.

为了继续开发新的抗癌化合物,我们设计、合成、表征了一系列新的咪唑[1,5-a]吡啶查尔酮衍生物,并评估了其对五种人类癌细胞系的细胞毒性,即乳腺癌(MDA-MB-231)、结肠癌(RKO)、骨(Mg-63)、前列腺(PC-3)、肝脏(HepG2)细胞系以及正常细胞系(HEK)。其中2个化合物对MDA-MB-231细胞株具有良好的细胞毒性,IC50值分别为4.23±0.25 μM和3.26±0.56 μM。我们还通过annexin V-FITC/PI染色研究了化合物对细胞凋亡的诱导作用,并通过DCFDA和JC-1染色研究了ros介导的线粒体损伤。通过免疫荧光和分子对接研究进一步证实了化合物的潜在活性,揭示了活性化合物通过结合和微管破坏的抗癌活性。
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引用次数: 0
Peptide-based amyloid-beta aggregation inhibitors
IF 3.597 Q2 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2024-12-31 DOI: 10.1039/D4MD00729H
Naina Sehra, Rajesh Parmar and Rahul Jain

Aberrant protein misfolding and accumulation is considered to be a major pathological pillar of neurodegenerative disorders, including Alzheimer's and Parkinson's diseases. Aggregation of amyloid-β (Aβ) peptide leads to the formation of toxic amyloid fibrils and is associated with cognitive dysfunction and memory loss in Alzheimer's disease (AD). Designing molecules that inhibit amyloid aggregation seems to be a rational approach to AD drug development. Over the years, researchers have utilized a variety of therapeutic strategies targeting different pathways, extensively studying peptide-based approaches to understand AD pathology and demonstrate their efficacy against Aβ aggregation. This review highlights rationally designed peptide/mimetics, including structure-based peptides, metal-peptide chelators, stapled peptides, and peptide-based nanomaterials as potential amyloid inhibitors.

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引用次数: 0
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