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“Old Techniques for New Times”: the RMaCzek package for producing Czekanowski’s diagrams “新时代的旧技术”:用于生成切卡诺夫斯基图的RMaCzek包
Pub Date : 2020-12-01 DOI: 10.2478/bile-2020-0008
K. Bartoszek, Albin Västerlund
Summary Inspired by the MaCzek Visual Basic program we pprovide an R package, RMaCzek, that produces Czekanowski’s diagrams. Our package permits any seriation and distance method the user provides. In this paper we focus on the “OLO” and “QAP_2SUM” methods from the seriation package. We illustrate the possibilities of our package with three anthropological studies, one socioeconomic study and a phylogenetically motivated simulation study.
受MaCzek Visual Basic程序的启发,我们提供了一个R包RMaCzek,它可以生成Czekanowski的图表。我们的包允许用户提供任何序列化和距离方法。本文主要研究序列化包中的“OLO”和“QAP_2SUM”方法。我们用三个人类学研究,一个社会经济研究和一个系统发育动机模拟研究来说明我们一揽子计划的可能性。
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引用次数: 2
Comparative evaluation of goodness of fit tests for normal distribution using simulation and empirical data 正态分布拟合优度检验的模拟与实证比较评价
Pub Date : 2020-12-01 DOI: 10.2478/bile-2020-0015
Achilleas Anastasiou, A. Karagrigoriou, A. Katsileros
Summary The normal distribution is considered to be one of the most important distributions, with numerous applications in various fields, including the field of agricultural sciences. The purpose of this study is to evaluate the most popular normality tests, comparing the performance in terms of the size (type I error) and the power against a large spectrum of distributions with simulations for various sample sizes and significance levels, as well as through empirical data from agricultural experiments. The simulation results show that the power of all normality tests is low for small sample size, but as the sample size increases, the power increases as well. Also, the results show that the Shapiro–Wilk test is powerful over a wide range of alternative distributions and sample sizes and especially in asymmetric distributions. Moreover the D’Agostino–Pearson Omnibus test is powerful for small sample sizes against symmetric alternative distributions, while the same is true for the Kurtosis test for moderate and large sample sizes.
正态分布被认为是最重要的分布之一,在各个领域都有大量的应用,包括农业科学领域。本研究的目的是评估最流行的正态性检验,通过模拟各种样本量和显著性水平,以及通过农业实验的经验数据,比较其在大小(I型误差)和对大范围分布的功率方面的性能。仿真结果表明,在小样本量下,所有正态性测试的功率都很低,但随着样本量的增加,功率也随之增加。此外,结果表明,夏皮罗-威尔克检验是强大的在广泛的替代分布和样本量,特别是在不对称分布。此外,D 'Agostino-Pearson综合检验对于对称替代分布的小样本量是强大的,而对于中等和大样本量的峰度检验也是如此。
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引用次数: 1
Assessment of the impact of NP fertilizer application depth on the rate of initial dry matter accumulation of maize (Zea mays L.) NP肥施用深度对玉米初始干物质积累速率的影响
Pub Date : 2020-12-01 DOI: 10.2478/bile-2020-0016
K. Ambroży-Deręgowska, P. Szulc, I. Mejza
Summary A field study was conducted at the Department of Agronomy of Poznań University of Life Sciences to determine the effect of the depth of NP fertilizer application in maize cultivation on the dynamics of initial maize growth, expressed in dry matter of a single plant at two juvenile maize stages. The adopted assumptions were verified on the basis of a four-year field experiment using four depths of NP fertilizer application, two nitrogen fertilizers and two nitrogen dose application dates. Thermal conditions in the early maize growing season had a significant effect on maize response to the depth of application of a phosphorus starting dose. Row fertilization (regardless of the depth of fertilizer application) was more effective than broadcast fertilization at both studied developmental stages.
在波兹纳瓦生命科学大学农学系进行了一项实地研究,以确定玉米栽培中NP肥施用深度对玉米初始生长动态的影响,该动态以玉米两个幼期单株干物质表达。通过4年4个NP施肥深度、2种氮肥和2个施氮日期的田间试验,对上述假设进行了验证。玉米生长早期的热条件对玉米磷肥施深的响应有显著影响。在研究的两个发育阶段,行施肥(不考虑施肥深度)都比撒播施肥更有效。
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引用次数: 1
Application of the ρV coefficient and distance correlation to the analysis of multivariate association ρV系数和距离相关在多变量关联分析中的应用
Pub Date : 2020-12-01 DOI: 10.2478/bile-2020-0009
Malwina Janiszewska, A. Szczepańska-Álvarez, Emilia E. Zawieja
Summary The aim of this paper is to study the association between two random vectors related to two groups of characteristics. To analyze the multivariate association, the ρV coefficient and distance correlation are used. Two methods (classical and recent) are compared and illustrated with real data.
本文的目的是研究与两组特征相关的两个随机向量之间的关联。运用ρV系数和距离相关分析多元关联关系。比较了两种方法(经典方法和现代方法),并用实际数据进行了说明。
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引用次数: 0
A meta-analysis of genotype × environment interaction on sugar beet performance 基因型与环境互作对甜菜生产性能的meta分析
Pub Date : 2020-12-01 DOI: 10.2478/bile-2020-0014
P. Fasahat, M. Aghaeezadeh, M. Kakueinezhad, Leila Jabbari
Summary The evaluation of sugar beet genotypes under different climate conditions is a principal goal of breeding programs. In most studies, environment has a high influence on the qualitative and quantitative traits of sugar beet. Therefore, data collected from different environments may contribute to more accurate genotype selection. In this study, the effect of different environments on sugar beet genotypes’ performance was evaluated using a meta-analysis method based on Hedges’ technique. Data were collected from 149 trials conducted in twelve regions in Iran over 15 years (2003–18). For all trials, the value of the traits was weighted, and subsequently the effect size, reaction ratio and confidence interval were estimated. Among the studied environments, Khoy had a positive effect on root yield, sugar content, sugar yield and white sugar yield. As could be expected, the effect of environment on final yield formation was high, so that the Shiraz environment had a negative effect on root yield and sugar yield. Overall, the ranking of environments based on the meta-analysis results was quite different from that obtained by comparison of mean results.
不同气候条件下甜菜基因型的评价是育种计划的主要目标。在大多数研究中,环境对甜菜的质量和数量性状有很大的影响。因此,从不同环境中收集的数据可能有助于更准确的基因型选择。本研究采用基于Hedges技术的荟萃分析方法,评估了不同环境对甜菜基因型生产性能的影响。数据收集于15年间(2003-18年)在伊朗12个地区进行的149项试验。对所有试验的性状值进行加权,然后估计效应大小、反应比和置信区间。在研究环境中,Khoy对根产量、含糖量、糖产量和白糖产量均有正向影响。可以预见,环境对最终产量形成的影响很大,因此设拉子环境对根产量和糖产量都有负面影响。总体而言,基于meta分析结果的环境排名与通过比较平均结果得出的排名有很大不同。
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引用次数: 1
Constructing non-orthogonal split-split-plot designs using some resolvable block designs 用一些可分辨的块设计构造非正交分块-分块图设计
Pub Date : 2020-12-01 DOI: 10.2478/bile-2020-0012
I. Mejza, K. Ambroży-Deręgowska, K. Ozawa, S. Mejza, Shinji Kuriki
Summary We consider a new method of constructing non-orthogonal (incomplete) split-split-plot designs (SSPDs) for three (A, B, C) factor experiments. The final design is generated by some resolvable incomplete block design (for the factor A) and by square lattice designs for factors B and C using a modified Kronecker product of those designs (incidence matrices). Statistical properties of the constructed designs are investigated under a randomized-derived linear model. This model is strictly connected with a four-step randomization of units (blocks, whole plots, subplots, sub-subplots inside each block). The final SSPD has orthogonal block structure (OBS) and satisfies the general balance (GB) property. The statistical analysis of experiments performed in the SSPD is based on the analysis of variance often used for multistratum experiments. We characterize the SSPD with respect to the stratum efficiency factors for the basic estimable treatment contrasts. The structures of the vectors defining treatment contrasts are also given.
我们考虑了一种构建三(a, B, C)因子试验的非正交(不完全)分裂-分裂-地块设计(SSPDs)的新方法。最终设计是由一些可解析的不完全块设计(对于因子A)和因子B和C的方形点阵设计生成的,使用这些设计的改进Kronecker积(关联矩阵)。在随机导出的线性模型下,研究了构建设计的统计特性。该模型与单元的四步随机化(每个块内的块、整块、子块、子子块)严格相连。最终的SSPD具有正交块结构(OBS),满足一般平衡(GB)特性。在SSPD中进行的实验的统计分析是基于通常用于多层实验的方差分析。我们根据地层效率因子来描述SSPD的特征,以获得基本的可估计处理对比。还给出了定义处理对比的载体的结构。
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引用次数: 1
On a new approach to the analysis of variance for experiments with orthogonal block structure. IV. Experiments in split-plot designs 正交块结构试验方差分析的新方法。四、分块设计试验
Pub Date : 2020-12-01 DOI: 10.2478/bile-2020-0011
T. Caliński, A. Łacka, I. Siatkowski
Summary This paper provides estimation and hypothesis testing procedures for experiments in split-plot designs. These experiments have been shown to have a convenient orthogonal block structure when properly randomized. Due to this property, the analysis of experimental data can be carried out in a relatively simple manner. Relevant simplification procedures are indicated. According to the adopted approach, the analysis of variance and hypothesis testing procedures can be performed directly, rather than by combining the results of analyses based on some stratum submodels. The practical application of the presented theory is illustrated by examples of real experiments in appropriate split-plot designs. The present paper is the fourth in the planned series of publications on the analysis of experiments with orthogonal block structure.
本文提供了分割图设计实验的估计和假设检验程序。这些实验表明,在适当随机化的情况下,具有方便的正交块结构。由于这一特性,可以比较简单地对实验数据进行分析。指出了有关的简化程序。根据所采用的方法,可以直接进行方差分析和假设检验程序,而不是将基于某些地层子模型的分析结果结合起来。通过适当分块设计的实际实验实例说明了该理论的实际应用。本文是计划发表的正交块结构实验分析系列文章中的第四篇。
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引用次数: 1
The Pearson Bayes factor: An analytic formula for computing evidential value from minimal summary statistics 皮尔逊贝叶斯因子:从最小汇总统计中计算证据值的解析公式
Pub Date : 2020-11-18 DOI: 10.2478/bile-2021-0001
Thomas J. Faulkenberry
Summary In Bayesian hypothesis testing, evidence for a statistical model is quantified by the Bayes factor, which represents the relative likelihood of observed data under that model compared to another competing model. In general, computing Bayes factors is difficult, as computing the marginal likelihood of data under a given model requires integrating over a prior distribution of model parameters. In this paper, I capitalize on a particular choice of prior distribution that allows the Bayes factor to be expressed without integral representation, and I develop a simple formula – the Pearson Bayes factor – that requires only minimal summary statistics as commonly reported in scientific papers, such as the t or F score and the degrees of freedom. In addition to presenting this new result, I provide several examples of its use and report a simulation study validating its performance. Importantly, the Pearson Bayes factor gives applied researchers the ability to compute exact Bayes factors from minimal summary data, and thus easily assess the evidential value of any data for which these summary statistics are provided, even when the original data is not available.
在贝叶斯假设检验中,统计模型的证据由贝叶斯因子量化,贝叶斯因子表示在该模型下观察到的数据与另一个竞争模型相比的相对可能性。一般来说,计算贝叶斯因子是困难的,因为计算给定模型下数据的边际似然需要对模型参数的先验分布进行积分。在本文中,我利用了先验分布的一个特殊选择,它允许贝叶斯因子在没有积分表示的情况下表示,并且我开发了一个简单的公式-皮尔逊贝叶斯因子-它只需要像科学论文中通常报道的最小汇总统计数据,例如t或F分数和自由度。除了介绍这个新结果之外,我还提供了几个使用它的示例,并报告了一个验证其性能的仿真研究。重要的是,皮尔逊贝叶斯因子使应用研究人员能够从最小的汇总数据中计算精确的贝叶斯因子,从而轻松评估提供这些汇总统计的任何数据的证据价值,即使原始数据不可用。
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引用次数: 5
Measuring change in longitudinal research on pragmatic competence: A multinomial logistic model 语用能力纵向研究中的变化测量:一个多项逻辑模型
Pub Date : 2020-06-22 DOI: 10.2478/bile-2020-0013
Anna Szczepaniak-Kozak, E. Bakinowska, Katerina Strani
Summary This paper focuses on pragmatic competence development in second or foreign language learners. In particular, it attempts to fill the significant research gap in measuring change in pragmatic competence and capturing pragmalinguistic and sociopragmatic development over time. The paper proposes an innovative approach by applying a logistic model with multinomial distribution for measuring change in InterLanguage Pragmatics Research (ILP). Applied in the field of pragmatics, this statistical tool offers a comprehensive and flexible approach to modelling relations between independent and dependent variables in ILP research. The model is tested in a longitudinal study of Polish undergraduate students learning English, and specifically in the way they formulate requests by means of requestive directness strategies. The paper concludes that, regardless of time elapsing, the factors P (power distance) and D (social distance) have a highly significant influence on the use of requestive directness strategies by Poles learning EFL. Furthermore, the analysis indicates that the pragmatic output of Poles learning EFL is dependent on one more independent variable: the estimation of future social distance (F).
本文主要研究第二语言和外语学习者语用能力的发展。特别是,它试图填补在衡量语用能力变化和捕捉语用语言学和社会语用学随时间的发展方面的重大研究空白。本文提出了一种采用多项分布逻辑模型来衡量语际语用研究变化的创新方法。该统计工具应用于语用学领域,为ILP研究中自变量和因变量之间的关系建模提供了一种全面而灵活的方法。通过对波兰大学生英语学习的纵向研究,对该模型进行了检验,特别是对他们使用直接请求策略提出请求的方式进行了检验。本文的结论是,无论时间长短,P(权力距离)和D(社会距离)对波兰人学习英语的直接请求策略的使用都有非常显著的影响。此外,分析表明,波兰人学习英语的语用输出依赖于另一个自变量:对未来社会距离的估计(F)。
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引用次数: 1
Identifying High Nature Value farmlands on a national scale based on multivariate typology at municipality (LAU 2) level 基于城市多元类型的全国高自然价值农田识别
Pub Date : 2020-06-01 DOI: 10.2478/bile-2020-0006
W. Mądry, Marcin Olik, B. Roszkowska-Mądra, M. Studnicki, D. Gozdowski, E. Wójcik-Gront
Summary High Nature Value farmlands in Europe are of greatest importance in the conservation of biodiversity. Their environmental importance has been recognized for some time, and has been studied mostly in Western Europe. This article describes the results of multivariate statistical analyses performed on data (13 variables) collected from the latest National Agricultural Census and the CORINE database to provide a typology of farmlands with respect to their nature value at municipality level (LAU 2, Local Administrative Units level 2) across Poland. All municipalities were grouped into eight categories (types). Some of the farmland categories were considered to be High Nature Value farmland (HNVf). The following interrelated variables mostly contributed to the identification of HNVf: share of protected areas and forest, grassland, arable land and fallow, farmland cover diversity, and rate of nitrogen fertilization. HNVf was identified in 958 out of 2173 municipalities, covering 44% of the territory of Poland. The identified HNVf also overlaps partially (61%) with LFAs (Less Favored Areas). Farmlands with the highest nature value are located mostly across mountain and hilly areas, close to forests, and protected areas on lowlands and river valleys. The identified HNV farmlands are characterized by low-input farming systems and a large share of semi-natural habitats with a high landscape mosaic.
在欧洲,高自然价值农田在保护生物多样性方面具有重要意义。它们对环境的重要性已经认识了一段时间,并且主要在西欧进行了研究。本文描述了对从最新的全国农业普查和CORINE数据库收集的数据(13个变量)进行的多变量统计分析的结果,以提供波兰各地市级(LAU 2,地方行政单位2级)农田的自然价值类型。所有城市被分为8类(类型)。一些农田类别被认为是高自然价值农田(HNVf)。保护区和森林、草地、耕地和休耕面积、农田覆盖多样性和氮肥施肥率等相关变量对HNVf的识别贡献最大。在2173个市中的958个市查明了高死亡率,占波兰领土的44%。确定的HNVf也与lfa(不受青睐地区)部分重叠(61%)。自然价值最高的农田大多分布在山地和丘陵地区,靠近森林,以及低地和河谷的保护区。已确定的高传染性病毒农田具有低投入耕作系统和高景观马赛克的半自然生境的特点。
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引用次数: 2
期刊
Biometrical Letters
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