首页 > 最新文献

Biotechnology advances最新文献

英文 中文
Towards syngas biorefineries: The potential of microbial consortia for syngas valorisation 迈向合成气生物精炼厂:微生物联合体对合成气增值的潜力。
IF 12.5 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-29 DOI: 10.1016/j.biotechadv.2025.108699
Silvia García-Casado , Raúl Muñoz , Raquel Lebrero
Gasification has emerged as a promising platform to cope with recalcitrant organic waste within the framework of biomass-based biorefineries, producing syngas that can be fermented into valuable bioproducts. Despite its potential, syngas fermentation is based predominantly on pure cultures, which faces significant challenges, including the limited portfolio of generated compounds (primarily acetate and ethanol) and their low productivity. To address these bottlenecks, the potential of microbial consortia as effective platforms for syngas conversion has been evaluated. Syngas biomethanation using mixed cultures is a well-established process, with pilot-scale implementations yielding promising results. Alternatively, the production of carboxylic acids has emerged as an interesting option compared to pure cultures, as comparable acetate productivities can be achieved along with the possibility for chain elongation to butyrate or caproate. However, the feasibility of using mixed cultures to produce alcohols and other high-value compounds from syngas remains underexplored. Advancing the field will also require the development of innovative technologies to overcome inherent barriers and fully unlock the potential of syngas-based bioprocesses. Key challenges include the presence of impurities and variability in syngas composition, mass transfer limitations in bioreactors, and the need for efficient downstream effluent purification. In this context, mixed cultures emerge as a robust approach capable of buffering syngas fluctuations and tolerating certain impurities. At the same time, the development of novel gas phase bioreactors and innovative membrane-based systems for effluent purification is crucial for enhancing CO and H2 mass transfer and improving products titers, respectively.
气化已经成为一个有前途的平台,可以在生物质生物精炼厂的框架内处理顽固的有机废物,产生可以发酵成有价值的生物产品的合成气。尽管合成气发酵具有潜力,但它主要基于纯培养物,这面临着重大挑战,包括产生的化合物(主要是醋酸酯和乙醇)组合有限,生产率低。为了解决这些瓶颈,微生物联合体作为合成气转化的有效平台的潜力已经被评估。使用混合培养的合成气生物甲烷化是一个成熟的过程,中试规模的实施产生了有希望的结果。另外,与纯培养物相比,羧酸的生产已经成为一个有趣的选择,因为可以实现相当的醋酸酯产量,并有可能将链伸长为丁酸盐或己酸盐。然而,利用混合培养从合成气中生产酒精和其他高价值化合物的可行性仍未得到充分探索。推进该领域还需要开发创新技术,以克服固有障碍,充分释放基于合成气的生物工艺的潜力。主要挑战包括合成气成分中存在杂质和可变性,生物反应器中的传质限制,以及对高效下游污水净化的需求。在这种情况下,混合培养成为一种强有力的方法,能够缓冲合成气波动和容忍某些杂质。与此同时,新型气相生物反应器和新型膜基系统的开发对于增强CO和H2的传质以及提高产品滴度至关重要。
{"title":"Towards syngas biorefineries: The potential of microbial consortia for syngas valorisation","authors":"Silvia García-Casado ,&nbsp;Raúl Muñoz ,&nbsp;Raquel Lebrero","doi":"10.1016/j.biotechadv.2025.108699","DOIUrl":"10.1016/j.biotechadv.2025.108699","url":null,"abstract":"<div><div>Gasification has emerged as a promising platform to cope with recalcitrant organic waste within the framework of biomass-based biorefineries, producing syngas that can be fermented into valuable bioproducts. Despite its potential, syngas fermentation is based predominantly on pure cultures, which faces significant challenges, including the limited portfolio of generated compounds (primarily acetate and ethanol) and their low productivity. To address these bottlenecks, the potential of microbial consortia as effective platforms for syngas conversion has been evaluated. Syngas biomethanation using mixed cultures is a well-established process, with pilot-scale implementations yielding promising results. Alternatively, the production of carboxylic acids has emerged as an interesting option compared to pure cultures, as comparable acetate productivities can be achieved along with the possibility for chain elongation to butyrate or caproate. However, the feasibility of using mixed cultures to produce alcohols and other high-value compounds from syngas remains underexplored. Advancing the field will also require the development of innovative technologies to overcome inherent barriers and fully unlock the potential of syngas-based bioprocesses. Key challenges include the presence of impurities and variability in syngas composition, mass transfer limitations in bioreactors, and the need for efficient downstream effluent purification. In this context, mixed cultures emerge as a robust approach capable of buffering syngas fluctuations and tolerating certain impurities. At the same time, the development of novel gas phase bioreactors and innovative membrane-based systems for effluent purification is crucial for enhancing CO and H<sub>2</sub> mass transfer and improving products titers, respectively.</div></div>","PeriodicalId":8946,"journal":{"name":"Biotechnology advances","volume":"85 ","pages":"Article 108699"},"PeriodicalIF":12.5,"publicationDate":"2025-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144941427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Machine learning in predictive biocatalysis: A comparative review of methods and applications 预测生物催化中的机器学习:方法和应用的比较回顾
IF 12.5 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-28 DOI: 10.1016/j.biotechadv.2025.108698
Neha Tripathi , Joan Hérisson , Jean-Loup Faulon
In recent years, machine learning has significantly advanced predictive biocatalysis, enabling innovative approaches to enzyme function prediction, biocatalyst discovery, reaction modeling, and metabolic pathway optimization. This review provides a comparative analysis of current methodologies, highlighting the intersection between computational tools and biochemical data for predictive biocatalysis applications. Key aspects covered include enzyme classification, reaction annotation, enzyme-substrate specificity, reaction outcomes, and kinetic parameter prediction. We discuss various machine learning approaches, such as neural networks with increased depth, convolutional networks, graph-based architectures, and transformer models, highlighting their respective strengths and limitations. The integration of large-scale data, representation and featurization techniques, and robust validation methods has accelerated enzyme discovery and the development of eco-friendly, sustainable biocatalytic processes. In the future, machine learning is anticipated to play a central role in connecting computational insights with practical enzyme engineering efforts, advancing applications in synthetic biology, metabolic engineering, and green biocatalysis.
近年来,机器学习极大地推进了预测生物催化,使酶功能预测、生物催化剂发现、反应建模和代谢途径优化的创新方法成为可能。这篇综述提供了当前方法的比较分析,突出了预测生物催化应用中计算工具和生化数据之间的交集。主要内容包括酶分类、反应注释、酶-底物特异性、反应结果和动力学参数预测。我们讨论了各种机器学习方法,如深度增加的神经网络、卷积网络、基于图的架构和变压器模型,并强调了它们各自的优势和局限性。大规模数据、表征和特征技术以及强大的验证方法的集成加速了酶的发现和生态友好、可持续生物催化过程的发展。在未来,机器学习有望在将计算洞察力与实际酶工程工作联系起来,推进合成生物学,代谢工程和绿色生物催化方面的应用方面发挥核心作用。
{"title":"Machine learning in predictive biocatalysis: A comparative review of methods and applications","authors":"Neha Tripathi ,&nbsp;Joan Hérisson ,&nbsp;Jean-Loup Faulon","doi":"10.1016/j.biotechadv.2025.108698","DOIUrl":"10.1016/j.biotechadv.2025.108698","url":null,"abstract":"<div><div>In recent years, machine learning has significantly advanced predictive biocatalysis, enabling innovative approaches to enzyme function prediction, biocatalyst discovery, reaction modeling, and metabolic pathway optimization. This review provides a comparative analysis of current methodologies, highlighting the intersection between computational tools and biochemical data for predictive biocatalysis applications. Key aspects covered include enzyme classification, reaction annotation, enzyme-substrate specificity, reaction outcomes, and kinetic parameter prediction. We discuss various machine learning approaches, such as neural networks with increased depth, convolutional networks, graph-based architectures, and transformer models, highlighting their respective strengths and limitations. The integration of large-scale data, representation and featurization techniques, and robust validation methods has accelerated enzyme discovery and the development of eco-friendly, sustainable biocatalytic processes. In the future, machine learning is anticipated to play a central role in connecting computational insights with practical enzyme engineering efforts, advancing applications in synthetic biology, metabolic engineering, and green biocatalysis.</div></div>","PeriodicalId":8946,"journal":{"name":"Biotechnology advances","volume":"84 ","pages":"Article 108698"},"PeriodicalIF":12.5,"publicationDate":"2025-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144916384","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multigene engineering in plants: Technologies, applications, and future prospects 植物多基因工程:技术、应用及未来展望。
IF 12.5 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-27 DOI: 10.1016/j.biotechadv.2025.108697
Ruchika Rajput , Brandon A. Boone , Rushil Mandlik , Md Torikul Islam , Yiping Qi , Jack Wang , Rodolphe Barrangou , Rosangela Sozzani , Carrie A. Eckert , Gerald A. Tuskan , Jin-Gui Chen , Xiaohan Yang
The emerging bioeconomy presents a promising solution to both economic and environmental challenges. Within the bioeconomy, plants serve as a renewable, sustainable, and cost-effective source of foods, fuels, chemicals, and materials. However, traditional breeding and single-gene engineering approaches fall short in addressing complex traits (e.g., drought tolerance, disease resistance, yield, nutrient use efficiency) which are controlled by multiple genes. The complexity of plant biology often necessitates the use of multigene engineering (MGE), which involves simultaneous ectopic expression, up/down-regulation, or editing of multiple genes, to enhance plant traits relevant to the bioeconomy. These genes may be associated with distinct traits or function as components of specific metabolic and regulatory pathways. This review summarizes current technologies for MGE within the synthetic biology-driven Design-Build-Test-Learn (DBTL) framework, detailing its four key stages: Design – gene construct development; Build – DNA assembly and plant transformation; Test – the molecular, biochemical, and physiological characterization of engineered plants; and Learn – computational modeling to refine, multiplex and iterate the process. Despite good progress in the applications of MGE in biofortification, metabolic engineering, and stress resilience, challenges remain in construct stability, coordinated gene expression, and regulatory predictability. We identified optimization paths and future directions to accelerate MGE deployment in sustainable agriculture, with possible societal benefits including reduced production costs, increased yield, and improved food and nutritional security.
新兴的生物经济为经济和环境挑战提供了一个有希望的解决方案。在生物经济中,植物是一种可再生的、可持续的、具有成本效益的食物、燃料、化学品和材料来源。然而,传统的育种和单基因工程方法在处理由多个基因控制的复杂性状(如耐旱性、抗病性、产量、养分利用效率)方面存在不足。植物生物学的复杂性往往需要使用多基因工程(MGE),包括同时异位表达,上调/下调或编辑多个基因,以增强与生物经济相关的植物性状。这些基因可能与不同的性状有关,或作为特定代谢和调节途径的组成部分发挥作用。本文综述了合成生物学驱动的设计-构建-测试-学习(DBTL)框架下MGE技术的现状,详细介绍了其四个关键阶段:设计-基因构建开发;构建- DNA组装与植物转化;测试-工程植物的分子、生化和生理特性;学习计算建模来细化、复用和迭代过程。尽管MGE在生物强化、代谢工程和应激恢复方面的应用取得了良好进展,但在构建稳定性、基因协调表达和调控可预测性方面仍存在挑战。我们确定了优化路径和未来方向,以加速MGE在可持续农业中的应用,可能带来的社会效益包括降低生产成本、提高产量、改善粮食和营养安全。
{"title":"Multigene engineering in plants: Technologies, applications, and future prospects","authors":"Ruchika Rajput ,&nbsp;Brandon A. Boone ,&nbsp;Rushil Mandlik ,&nbsp;Md Torikul Islam ,&nbsp;Yiping Qi ,&nbsp;Jack Wang ,&nbsp;Rodolphe Barrangou ,&nbsp;Rosangela Sozzani ,&nbsp;Carrie A. Eckert ,&nbsp;Gerald A. Tuskan ,&nbsp;Jin-Gui Chen ,&nbsp;Xiaohan Yang","doi":"10.1016/j.biotechadv.2025.108697","DOIUrl":"10.1016/j.biotechadv.2025.108697","url":null,"abstract":"<div><div>The emerging bioeconomy presents a promising solution to both economic and environmental challenges. Within the bioeconomy, plants serve as a renewable, sustainable, and cost-effective source of foods, fuels, chemicals, and materials. However, traditional breeding and single-gene engineering approaches fall short in addressing complex traits (e.g., drought tolerance, disease resistance, yield, nutrient use efficiency) which are controlled by multiple genes. The complexity of plant biology often necessitates the use of multigene engineering (MGE), which involves simultaneous ectopic expression, up/down-regulation, or editing of multiple genes, to enhance plant traits relevant to the bioeconomy. These genes may be associated with distinct traits or function as components of specific metabolic and regulatory pathways. This review summarizes current technologies for MGE within the synthetic biology-driven Design-Build-Test-Learn (DBTL) framework, detailing its four key stages: Design – gene construct development; Build – DNA assembly and plant transformation; Test – the molecular, biochemical, and physiological characterization of engineered plants; and Learn – computational modeling to refine, multiplex and iterate the process. Despite good progress in the applications of MGE in biofortification, metabolic engineering, and stress resilience, challenges remain in construct stability, coordinated gene expression, and regulatory predictability. We identified optimization paths and future directions to accelerate MGE deployment in sustainable agriculture, with possible societal benefits including reduced production costs, increased yield, and improved food and nutritional security.</div></div>","PeriodicalId":8946,"journal":{"name":"Biotechnology advances","volume":"85 ","pages":"Article 108697"},"PeriodicalIF":12.5,"publicationDate":"2025-08-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144941442","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Chemical imaging of lignocellulosic biomass: Mapping plant chemistry 木质纤维素生物质的化学成像:植物化学制图。
IF 12.5 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-25 DOI: 10.1016/j.biotechadv.2025.108696
Noah Remy , David Touboul , Edith Nicol , Séverine Humbert , Luminita Duma , Pedro Lameiras , Jean-Hugues Renault , Gabriel Paës
Lignocellulosic biomass (LB), which encompasses various plant samples, requires thorough characterization to optimize its use as a carbon resource. Chemical imaging simultaneously provides chemical and spatial information, offering significant benefits for LB analysis. This review presents an overview of the most advanced techniques for achieving this goal. By combining spectrometry and microscopy, microspectroscopy enables chemical imaging using various irradiation sources (IR, Raman, fluorescence, among others), allowing for the quantitative mapping of key LB components such as lignins, cellulose, and hemicelluloses. Mass Spectrometry Imaging (MSI) generates a mass spectrum for each spot of a sample thereby creating a chemical image pixel-by-pixel. MSI techniques like Matrix-Assisted Laser Desorption/Ionization (MALDI), down to 2–5 μm spatial resolution, and Secondary Ion Mass Spectrometry (SIMS), down to 300 nm for molecular analysis, effectively map small molecules in LB. In contrast, Desorption ElectroSpray Ionization (DESI) has been applied to plant extracts but remains largely unexplored for LB applications. Nuclear Magnetic Resonance (NMR) provides insight into various LB properties too. Solid-state NMR (ssNMR) and Dynamic Nuclear Polarization (DNP) help elucidate the structure of LB, sometimes aided by 3D atomistic modeling, whereas micro–Magnetic Resonance Imaging (micro-MRI) and Time-Domain (TD-NMR) probe the impact of water on LB properties.
木质纤维素生物质(LB),其中包括各种植物样品,需要彻底的表征,以优化其作为碳资源的使用。化学成像同时提供化学和空间信息,为LB分析提供了显著的好处。本文概述了实现这一目标的最先进的技术。通过结合光谱和显微镜,微光谱学可以使用各种辐照源(红外、拉曼、荧光等)进行化学成像,从而可以定量绘制关键LB成分,如木质素、纤维素和半纤维素。质谱成像(MSI)为样品的每个点生成质谱,从而逐像素创建化学图像。MSI技术,如基质辅助激光解吸/电离(MALDI),低至2-5 μm的空间分辨率,以及二次离子质谱(SIMS),低至300 nm的分子分析,有效地绘制LB中的小分子。相比之下,解吸电喷雾电离(DESI)已经应用于植物提取物,但在LB应用中仍未得到很大的探索。核磁共振(NMR)也提供了对各种LB特性的洞察。固态核磁共振(ssNMR)和动态核极化(DNP)有助于阐明LB的结构,有时借助3D原子建模,而微磁共振成像(micro-MRI)和时域(TD-NMR)则探测水对LB性质的影响。
{"title":"Chemical imaging of lignocellulosic biomass: Mapping plant chemistry","authors":"Noah Remy ,&nbsp;David Touboul ,&nbsp;Edith Nicol ,&nbsp;Séverine Humbert ,&nbsp;Luminita Duma ,&nbsp;Pedro Lameiras ,&nbsp;Jean-Hugues Renault ,&nbsp;Gabriel Paës","doi":"10.1016/j.biotechadv.2025.108696","DOIUrl":"10.1016/j.biotechadv.2025.108696","url":null,"abstract":"<div><div>Lignocellulosic biomass (LB), which encompasses various plant samples, requires thorough characterization to optimize its use as a carbon resource. Chemical imaging simultaneously provides chemical and spatial information, offering significant benefits for LB analysis. This review presents an overview of the most advanced techniques for achieving this goal. By combining spectrometry and microscopy, microspectroscopy enables chemical imaging using various irradiation sources (IR, Raman, fluorescence, among others), allowing for the quantitative mapping of key LB components such as lignins, cellulose, and hemicelluloses. Mass Spectrometry Imaging (MSI) generates a mass spectrum for each spot of a sample thereby creating a chemical image pixel-by-pixel. MSI techniques like Matrix-Assisted Laser Desorption/Ionization (MALDI), down to 2–5 μm spatial resolution, and Secondary Ion Mass Spectrometry (SIMS), down to 300 nm for molecular analysis, effectively map small molecules in LB. In contrast, Desorption ElectroSpray Ionization (DESI) has been applied to plant extracts but remains largely unexplored for LB applications. Nuclear Magnetic Resonance (NMR) provides insight into various LB properties too. Solid-state NMR (ssNMR) and Dynamic Nuclear Polarization (DNP) help elucidate the structure of LB, sometimes aided by 3D atomistic modeling, whereas micro–Magnetic Resonance Imaging (micro-MRI) and Time-Domain (TD-NMR) probe the impact of water on LB properties.</div></div>","PeriodicalId":8946,"journal":{"name":"Biotechnology advances","volume":"85 ","pages":"Article 108696"},"PeriodicalIF":12.5,"publicationDate":"2025-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144941396","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Why the military should be interested in biomedical technology: four domains of innovation that could change fighting power 为什么军方应该对生物医学技术感兴趣:可以改变战斗力的四个创新领域
IF 12.5 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-25 DOI: 10.1016/j.biotechadv.2025.108695
David Gisselsson , Jean-Paul Pirnay , Michael Wiederoder , Corey Hart , Alberto Rinaldi , Olivier Gorgé , Heather Iriye , Luís Carvalho , Lucie Sedlackova , Øyvind Voie , Yohan Robinson
Biotechnology is a rapidly progressive field, currently transforming agriculture, healthcare, and life sciences. This rapid development comes with serious legal and ethical challenges as well as risks for human security and health. NATO has prioritized biotechnology and human enhancement technologies for defense, focusing on legitimate, defensive applications. This paper highlights four clusters of biomedical technologies with the potential to enhance warfighter performance:
  • 1.
    Small-scale sensors with response capability: These sensors, already used in civilian healthcare for glucose monitoring and insulin dosing, could be adapted for military use to administer antidotes or antibiotics in response to chemical or biological threats.
  • 2.
    Microbial engineering: Tailor-made probiotics could prepare soldiers' gut microbiomes to prevent travel-related illnesses, while bacteriophages, can be used to combat infections resistant to antibiotics.
  • 3.
    Human-machine interaction: Neurocybernetics is transforming military robotics by enabling seamless communication between humans and machines.
  • 4.
    Omics and informatics: Precision medicine combined with machine intelligence can be used for medical screening and monitoring of soldiers, as well as for biomedical intelligence gathering.
These technologies, progressing in civilian sectors, have significant potential to enhance military capabilities in the near future (5–10 years). Oversight and prioritization of human rights are essential to ensure responsible application, maintaining human dignity, bodily integrity, and personal autonomy even in wartime. As military innovation systems worldwide are advancing in strategic biotechnologies, it is critical for NATO countries to maintain synergistic intra-alliance collaboration in this intense field.
生物技术是一个快速发展的领域,目前正在改变农业、医疗保健和生命科学。这种快速发展带来了严重的法律和道德挑战,也给人类安全和健康带来了风险。北约优先考虑生物技术和人类增强技术用于国防,重点是合法的防御应用。本文重点介绍了四组具有提高作战人员性能潜力的生物医学技术:具有响应能力的小型传感器:这些传感器已在民用医疗保健中用于葡萄糖监测和胰岛素剂量,可用于军事用途,在应对化学或生物威胁时施用解毒剂或抗生素。微生物工程:量身定制的益生菌可以为士兵的肠道微生物群做准备,以预防与旅行有关的疾病,而噬菌体可以用来对抗对抗生素有抗药性的感染。人机交互:神经控制论通过实现人与机器之间的无缝通信,正在改变军事机器人技术。组学和信息学:精准医学与机器智能相结合,可用于士兵的医疗筛查和监测,以及生物医学情报收集。这些技术在民用领域取得进展,在不久的将来(5-10年)具有增强军事能力的巨大潜力。监督和优先考虑人权对于确保负责任的应用、维护人的尊严、身体完整和个人自主权至关重要,即使在战时也是如此。随着全球军事创新系统在战略生物技术领域的发展,北约国家在这一激烈领域保持协同合作至关重要。
{"title":"Why the military should be interested in biomedical technology: four domains of innovation that could change fighting power","authors":"David Gisselsson ,&nbsp;Jean-Paul Pirnay ,&nbsp;Michael Wiederoder ,&nbsp;Corey Hart ,&nbsp;Alberto Rinaldi ,&nbsp;Olivier Gorgé ,&nbsp;Heather Iriye ,&nbsp;Luís Carvalho ,&nbsp;Lucie Sedlackova ,&nbsp;Øyvind Voie ,&nbsp;Yohan Robinson","doi":"10.1016/j.biotechadv.2025.108695","DOIUrl":"10.1016/j.biotechadv.2025.108695","url":null,"abstract":"<div><div>Biotechnology is a rapidly progressive field, currently transforming agriculture, healthcare, and life sciences. This rapid development comes with serious legal and ethical challenges as well as risks for human security and health. NATO has prioritized biotechnology and human enhancement technologies for defense, focusing on legitimate, defensive applications. This paper highlights four clusters of biomedical technologies with the potential to enhance warfighter performance:<ul><li><span>1.</span><span><div><strong>Small-scale sensors with response capability</strong>: These sensors, already used in civilian healthcare for glucose monitoring and insulin dosing, could be adapted for military use to administer antidotes or antibiotics in response to chemical or biological threats.</div></span></li><li><span>2.</span><span><div><strong>Microbial engineering:</strong> Tailor-made probiotics could prepare soldiers' gut microbiomes to prevent travel-related illnesses, while bacteriophages, can be used to combat infections resistant to antibiotics.</div></span></li><li><span>3.</span><span><div><strong>Human-machine interaction</strong>: Neurocybernetics is transforming military robotics by enabling seamless communication between humans and machines.</div></span></li><li><span>4.</span><span><div><strong>Omics and informatics</strong>: Precision medicine combined with machine intelligence can be used for medical screening and monitoring of soldiers, as well as for biomedical intelligence gathering.</div></span></li></ul></div><div>These technologies, progressing in civilian sectors, have significant potential to enhance military capabilities in the near future (5–10 years). Oversight and prioritization of human rights are essential to ensure responsible application, maintaining human dignity, bodily integrity, and personal autonomy even in wartime. As military innovation systems worldwide are advancing in strategic biotechnologies, it is critical for NATO countries to maintain synergistic intra-alliance collaboration in this intense field.</div></div>","PeriodicalId":8946,"journal":{"name":"Biotechnology advances","volume":"84 ","pages":"Article 108695"},"PeriodicalIF":12.5,"publicationDate":"2025-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144919811","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Emerging research insights and future perspectives on the advancement of eccDNA: A comprehensive review ecdna进展的新研究见解和未来展望:综述
IF 12.5 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-22 DOI: 10.1016/j.biotechadv.2025.108693
Kunlong Qi , Zheliang Liu , Felix Kwame Amevor , Dan Xu , Wei Zhu , Tong Li , Yingjie Wang , Liuting Wu , Gang Shu , Xiaoling Zhao
Extrachromosomal circular DNA (eccDNA) is a class of chromosome-independent circular DNA molecules found in diverse organisms, including plants, animals, and microorganisms. Recent research has highlighted its roles in gene regulation, genome stability, and disease pathogenesis, with growing recognition of eccDNA as a valuable biomarker for cancer diagnosis, prognosis, and monitoring in precision medicine. Studies have also linked eccDNA to non-neoplastic diseases and normal tissue biology, broadening its biological significance beyond malignancies. Technological advancements have greatly enhanced the detection and characterization of eccDNA, enabling a better understanding of its formation, diversity, and functions. In agriculture, eccDNA research has shown potential applications for improving livestock productivity and health management. This review provides a comprehensive analysis of the current state of eccDNA research, focusing on its formation mechanisms, classification, biological functions, and implications in both disease and agriculture. Despite significant progress, challenges remain in fully understanding the biological roles, formation processes, and practical applications of eccDNA. Future research should adopt interdisciplinary approaches that integrate genomics, bioinformatics, and material science to further elucidate the complexities of eccDNA. By advancing our knowledge of eccDNA, researchers may unlock novel diagnostic, therapeutic, and biotechnological innovations, particularly in cancer treatment and livestock breeding programs.
染色体外环状DNA (extrachrosomal circular DNA, eccDNA)是一类与染色体无关的环状DNA分子,存在于多种生物中,包括植物、动物和微生物。最近的研究强调了它在基因调控、基因组稳定和疾病发病机制中的作用,越来越多的人认识到eccDNA在精准医学中作为癌症诊断、预后和监测的有价值的生物标志物。研究还将eccDNA与非肿瘤性疾病和正常组织生物学联系起来,将其生物学意义扩大到恶性肿瘤之外。技术进步极大地增强了对eccDNA的检测和表征,使人们能够更好地了解其形成、多样性和功能。在农业方面,ecdna研究显示了在提高牲畜生产力和健康管理方面的潜在应用。本文综述了ecdna的研究现状,重点介绍了其形成机制、分类、生物学功能及其在疾病和农业方面的意义。尽管取得了重大进展,但在充分理解eccDNA的生物学作用、形成过程和实际应用方面仍然存在挑战。未来的研究应采用跨学科的方法,将基因组学、生物信息学和材料科学相结合,进一步阐明eccDNA的复杂性。通过提高我们对eccDNA的了解,研究人员可能会开启新的诊断、治疗和生物技术创新,特别是在癌症治疗和牲畜育种计划方面。
{"title":"Emerging research insights and future perspectives on the advancement of eccDNA: A comprehensive review","authors":"Kunlong Qi ,&nbsp;Zheliang Liu ,&nbsp;Felix Kwame Amevor ,&nbsp;Dan Xu ,&nbsp;Wei Zhu ,&nbsp;Tong Li ,&nbsp;Yingjie Wang ,&nbsp;Liuting Wu ,&nbsp;Gang Shu ,&nbsp;Xiaoling Zhao","doi":"10.1016/j.biotechadv.2025.108693","DOIUrl":"10.1016/j.biotechadv.2025.108693","url":null,"abstract":"<div><div>Extrachromosomal circular DNA (eccDNA) is a class of chromosome-independent circular DNA molecules found in diverse organisms, including plants, animals, and microorganisms. Recent research has highlighted its roles in gene regulation, genome stability, and disease pathogenesis, with growing recognition of eccDNA as a valuable biomarker for cancer diagnosis, prognosis, and monitoring in precision medicine. Studies have also linked eccDNA to non-neoplastic diseases and normal tissue biology, broadening its biological significance beyond malignancies. Technological advancements have greatly enhanced the detection and characterization of eccDNA, enabling a better understanding of its formation, diversity, and functions. In agriculture, eccDNA research has shown potential applications for improving livestock productivity and health management. This review provides a comprehensive analysis of the current state of eccDNA research, focusing on its formation mechanisms, classification, biological functions, and implications in both disease and agriculture. Despite significant progress, challenges remain in fully understanding the biological roles, formation processes, and practical applications of eccDNA. Future research should adopt interdisciplinary approaches that integrate genomics, bioinformatics, and material science to further elucidate the complexities of eccDNA. By advancing our knowledge of eccDNA, researchers may unlock novel diagnostic, therapeutic, and biotechnological innovations, particularly in cancer treatment and livestock breeding programs.</div></div>","PeriodicalId":8946,"journal":{"name":"Biotechnology advances","volume":"84 ","pages":"Article 108693"},"PeriodicalIF":12.5,"publicationDate":"2025-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144893127","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The stressing point: how plants respond to environmental stimuli 重点是:植物如何对环境刺激作出反应
IF 12.5 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-22 DOI: 10.1016/j.biotechadv.2025.108691
Raymond Joseph , Wilgince Apollon , Antonio Costa De Oliveira
This review article examines how environmental stress affects plant development by changing their morphological features, physiological processes, biochemical pathways, and gene regulatory mechanisms. Eukaryotic plants face major agricultural challenges because they are stationary, making them constantly susceptible to adverse conditions such as drought, salinity, extreme temperatures, and heavy metal contamination. Key findings highlight the genetic and molecular factors that drive adaptive responses, including the production of osmoprotective and antioxidant compounds that improve stress tolerance. For instance, the review shows how wheat produces proline during water stress and discusses the role of differentially expressed genes (DEGs) in maize. It also covers how salt stress responses are regulated by Dehydration-Responsive Element-Binding (DREB) and basic/helix-loop-helix (bHLH) transcription factors, as well as how gene expression in sugar beet is controlled by non-coding RNAs. Furthermore, we examine how plants adapt to thermal and light stress, describing physiological and biochemical changes, including the regulation of heat shock proteins and gene expression under intense light conditions. Overall, our review emphasizes that plant stress adaptation relies on complex genetic, physiological, and biochemical mechanisms that support the development of resilient crop varieties and sustainable farming practices.
本文综述了环境胁迫如何通过改变植物的形态特征、生理过程、生化途径和基因调控机制等方面影响植物的发育。真核植物面临着重大的农业挑战,因为它们是静止的,使它们经常容易受到干旱、盐度、极端温度和重金属污染等不利条件的影响。关键发现强调了驱动适应性反应的遗传和分子因素,包括提高应激耐受性的渗透保护和抗氧化化合物的产生。例如,这篇综述展示了小麦在水分胁迫下如何产生脯氨酸,并讨论了差异表达基因(DEGs)在玉米中的作用。它还涵盖了脱水反应元件结合(DREB)和基本/螺旋-环-螺旋(bHLH)转录因子如何调节盐胁迫反应,以及甜菜基因表达如何由非编码rna控制。此外,我们研究了植物如何适应热和光胁迫,描述了生理和生化变化,包括在强光条件下热休克蛋白和基因表达的调节。总之,我们的综述强调,植物的逆境适应依赖于复杂的遗传、生理和生化机制,这些机制支持了抗逆性作物品种和可持续耕作方式的发展。
{"title":"The stressing point: how plants respond to environmental stimuli","authors":"Raymond Joseph ,&nbsp;Wilgince Apollon ,&nbsp;Antonio Costa De Oliveira","doi":"10.1016/j.biotechadv.2025.108691","DOIUrl":"10.1016/j.biotechadv.2025.108691","url":null,"abstract":"<div><div>This review article examines how environmental stress affects plant development by changing their morphological features, physiological processes, biochemical pathways, and gene regulatory mechanisms. Eukaryotic plants face major agricultural challenges because they are stationary, making them constantly susceptible to adverse conditions such as drought, salinity, extreme temperatures, and heavy metal contamination. Key findings highlight the genetic and molecular factors that drive adaptive responses, including the production of osmoprotective and antioxidant compounds that improve stress tolerance. For instance, the review shows how wheat produces proline during water stress and discusses the role of differentially expressed genes (DEGs) in maize. It also covers how salt stress responses are regulated by Dehydration-Responsive Element-Binding (DREB) and basic/helix-loop-helix (bHLH) transcription factors, as well as how gene expression in sugar beet is controlled by non-coding RNAs. Furthermore, we examine how plants adapt to thermal and light stress, describing physiological and biochemical changes, including the regulation of heat shock proteins and gene expression under intense light conditions. Overall, our review emphasizes that plant stress adaptation relies on complex genetic, physiological, and biochemical mechanisms that support the development of resilient crop varieties and sustainable farming practices.</div></div>","PeriodicalId":8946,"journal":{"name":"Biotechnology advances","volume":"84 ","pages":"Article 108691"},"PeriodicalIF":12.5,"publicationDate":"2025-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144900378","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineering plant hosts for high-efficiency accumulation of flavonoids: Advances, challenges and perspectives 高效积累类黄酮的工程植物宿主:进展、挑战与展望
IF 12.5 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-22 DOI: 10.1016/j.biotechadv.2025.108692
Yameng Xu , Xiaoyang Ge , Yongkun Lv , Zhaoen Yang , Fuguang Li , Zuoren Yang
Flavonoids are a vital class of compounds that contribute to plant resistance and also beneficial to human health. Increasing plant flavonoid content or enabling the synthesis of specific flavonoids can enhance plant resistance to biotic and abiotic stress while augmenting their nutritional value, thereby supporting sustainable agricultural practices. Although numerous studies have focused on increasing flavonoid content in plants, traditional engineering strategies lack the precision required to selectively regulate the synthesis of individual flavonoids. In contrast, systems and synthetic biology provide innovation approaches to address these challenges. Here, we summarize research on the distribution, biosynthetic pathways, and transcriptional regulation of flavonoids in plants. Subsequently, we analyze current progress in altering plant-flavonoid content, including transcriptional regulation, transporter engineering, and lifting rate-limiting steps. Additionally, we summarize potential strategies for precisely altering flavonoid biosynthetic pathways, including the selection of ideal hosts, designating artificially modifiable genetic elements, accelerating enzyme evolution by protein engineering, enhancing cascade biocatalysis and metabolic flux, and rebalancing metabolic fluxes. Finally, we discuss current limitations and prospects for building a next-generation plant hosts for high-efficiency flavonoid biosynthesis. This review aims to provide theoretical guidance for the modification and reconstruction of flavonoid biosynthesis in plants using systems and synthetic biology approaches.
黄酮类化合物是一类重要的化合物,有助于植物抵抗,也有益于人体健康。增加植物类黄酮含量或使特定类黄酮的合成能够增强其对生物和非生物胁迫的抵抗力,同时增加其营养价值,从而支持可持续农业实践。尽管许多研究都集中在增加植物中类黄酮的含量,但传统的工程策略缺乏选择性调节单个类黄酮合成所需的精度。相比之下,系统和合成生物学为解决这些挑战提供了创新的方法。本文就黄酮类化合物在植物中的分布、生物合成途径及转录调控等方面的研究进展进行综述。随后,我们分析了目前在改变植物类黄酮含量方面的进展,包括转录调控、转运蛋白工程和提高速率限制步骤。此外,我们总结了精确改变类黄酮生物合成途径的潜在策略,包括选择理想宿主,指定人工修饰的遗传元件,通过蛋白质工程加速酶的进化,增强级联生物催化和代谢通量,以及重新平衡代谢通量。最后,我们讨论了构建下一代高效类黄酮生物合成植物宿主的局限性和前景。本文旨在为应用系统生物学和合成生物学方法对植物类黄酮生物合成过程进行修饰和重构提供理论指导。
{"title":"Engineering plant hosts for high-efficiency accumulation of flavonoids: Advances, challenges and perspectives","authors":"Yameng Xu ,&nbsp;Xiaoyang Ge ,&nbsp;Yongkun Lv ,&nbsp;Zhaoen Yang ,&nbsp;Fuguang Li ,&nbsp;Zuoren Yang","doi":"10.1016/j.biotechadv.2025.108692","DOIUrl":"10.1016/j.biotechadv.2025.108692","url":null,"abstract":"<div><div>Flavonoids are a vital class of compounds that contribute to plant resistance and also beneficial to human health. Increasing plant flavonoid content or enabling the synthesis of specific flavonoids can enhance plant resistance to biotic and abiotic stress while augmenting their nutritional value, thereby supporting sustainable agricultural practices. Although numerous studies have focused on increasing flavonoid content in plants, traditional engineering strategies lack the precision required to selectively regulate the synthesis of individual flavonoids. In contrast, systems and synthetic biology provide innovation approaches to address these challenges. Here, we summarize research on the distribution, biosynthetic pathways, and transcriptional regulation of flavonoids in plants. Subsequently, we analyze current progress in altering plant-flavonoid content, including transcriptional regulation, transporter engineering, and lifting rate-limiting steps. Additionally, we summarize potential strategies for precisely altering flavonoid biosynthetic pathways, including the selection of ideal hosts, designating artificially modifiable genetic elements, accelerating enzyme evolution by protein engineering, enhancing cascade biocatalysis and metabolic flux, and rebalancing metabolic fluxes. Finally, we discuss current limitations and prospects for building a next-generation plant hosts for high-efficiency flavonoid biosynthesis. This review aims to provide theoretical guidance for the modification and reconstruction of flavonoid biosynthesis in plants using systems and synthetic biology approaches.</div></div>","PeriodicalId":8946,"journal":{"name":"Biotechnology advances","volume":"84 ","pages":"Article 108692"},"PeriodicalIF":12.5,"publicationDate":"2025-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144900576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineering cyclized biomolecules for advanced diagnostic and therapeutic applications 工程循环生物分子用于先进的诊断和治疗应用
IF 12.5 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-22 DOI: 10.1016/j.biotechadv.2025.108694
Yeonju Lee , Bohyun Oh , Sumin Kang , Sumin Kim , Young-Pil Kim
Nucleic acids, peptides, and proteins demonstrate remarkable structural diversity and play essential roles in various biological processes. These biomolecules function as ligands, diagnostic agents, and therapeutic cargoes. However, their practical applications are often limited by inherent instability and inefficient delivery for targeted diagnosis and therapy. Cyclization has emerged as a promising solution, endowing these biomolecules with enhanced conformational rigidity, resistance to degradation, and a broader range of biological activities. Cyclic architectures not only enhance antitumor, anti-inflammatory, and anti-infective properties, but also eliminate the need for auxiliary carriers in some applications. This deliberate cyclization further enables precise control over binding affinity, stability, and membrane permeability. In this review, we cover diverse engineering methods for creating cyclized biomolecules and explore their applications in biosensing, targeted imaging, and delivery. Moving beyond naturally occurring forms, we highlight rationally engineered cyclized constructs that substantially expand their theranostic landscape in biology and biotechnology.
核酸、多肽和蛋白质具有显著的结构多样性,在各种生物过程中发挥着重要作用。这些生物分子作为配体、诊断剂和治疗物资发挥作用。然而,它们的实际应用往往受到固有的不稳定性和低效率的靶向诊断和治疗的限制。环化已成为一种很有前途的解决方案,赋予这些生物分子增强的构象刚性,抗降解性和更广泛的生物活性。环状结构不仅增强了抗肿瘤、抗炎和抗感染的特性,而且在某些应用中消除了对辅助载体的需要。这种刻意的环化进一步实现了对结合亲和力、稳定性和膜渗透性的精确控制。在这篇综述中,我们介绍了制造环化生物分子的各种工程方法,并探讨了它们在生物传感、靶向成像和递送方面的应用。超越自然发生的形式,我们强调合理工程的环化结构,这大大扩展了它们在生物学和生物技术中的治疗前景。
{"title":"Engineering cyclized biomolecules for advanced diagnostic and therapeutic applications","authors":"Yeonju Lee ,&nbsp;Bohyun Oh ,&nbsp;Sumin Kang ,&nbsp;Sumin Kim ,&nbsp;Young-Pil Kim","doi":"10.1016/j.biotechadv.2025.108694","DOIUrl":"10.1016/j.biotechadv.2025.108694","url":null,"abstract":"<div><div>Nucleic acids, peptides, and proteins demonstrate remarkable structural diversity and play essential roles in various biological processes. These biomolecules function as ligands, diagnostic agents, and therapeutic cargoes. However, their practical applications are often limited by inherent instability and inefficient delivery for targeted diagnosis and therapy. Cyclization has emerged as a promising solution, endowing these biomolecules with enhanced conformational rigidity, resistance to degradation, and a broader range of biological activities. Cyclic architectures not only enhance antitumor, anti-inflammatory, and anti-infective properties, but also eliminate the need for auxiliary carriers in some applications. This deliberate cyclization further enables precise control over binding affinity, stability, and membrane permeability. In this review, we cover diverse engineering methods for creating cyclized biomolecules and explore their applications in biosensing, targeted imaging, and delivery. Moving beyond naturally occurring forms, we highlight rationally engineered cyclized constructs that substantially expand their theranostic landscape in biology and biotechnology.</div></div>","PeriodicalId":8946,"journal":{"name":"Biotechnology advances","volume":"84 ","pages":"Article 108694"},"PeriodicalIF":12.5,"publicationDate":"2025-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144900411","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multidimensional strategies for efficient heterologous protein expression in Aspergillus niger 黑曲霉高效异源蛋白表达的多维策略
IF 12.5 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-20 DOI: 10.1016/j.biotechadv.2025.108690
Zehan Shi , Jiaxuan Li , Fengmei Zhu , Xiaojing Liu , Jiefang Zhou , Jun Li , Wentao Xu
Microbial protein is a promising alternative to animal and plant proteins. Aspergillus niger, a generally recognized as safe (GRAS) microorganism, is frequently used for heterologous protein production, although its expression efficiency is constrained by multiple factors, including gene transcription, metabolic flux distribution, protein folding, and secretion pathways. However, constructing universal Aspergillus niger chassis cells for efficient protein production remains challenging due to the diverse properties of different proteins. With advancements in synthetic biology, numerous molecular biology tools and metabolic engineering strategies have been employed to address these issues. This article summarizes and discusses the latest progress in enhancing heterologous protein production from five dimensions: expression systems, secretion pathways, metabolic flux, intelligent fermentation, and systematic optimization through multi-omics integration. Additionally, it prospects the efficient and sustainable production of heterologous proteins by Aspergillus niger.
微生物蛋白是一种很有前途的动物和植物蛋白替代品。黑曲霉(Aspergillus niger)是公认的安全微生物(GRAS),常用于异源蛋白的生产,但其表达效率受到多种因素的制约,包括基因转录、代谢通量分布、蛋白质折叠和分泌途径等。然而,由于不同蛋白质的不同性质,构建通用的黑曲霉底盘细胞以高效生产蛋白质仍然具有挑战性。随着合成生物学的进步,许多分子生物学工具和代谢工程策略被用来解决这些问题。本文从表达系统、分泌途径、代谢通量、智能发酵、多组学整合优化等5个方面综述了提高外源蛋白产量的最新进展。展望了黑曲霉高效、可持续地生产外源蛋白的前景。
{"title":"Multidimensional strategies for efficient heterologous protein expression in Aspergillus niger","authors":"Zehan Shi ,&nbsp;Jiaxuan Li ,&nbsp;Fengmei Zhu ,&nbsp;Xiaojing Liu ,&nbsp;Jiefang Zhou ,&nbsp;Jun Li ,&nbsp;Wentao Xu","doi":"10.1016/j.biotechadv.2025.108690","DOIUrl":"10.1016/j.biotechadv.2025.108690","url":null,"abstract":"<div><div>Microbial protein is a promising alternative to animal and plant proteins. <em>Aspergillus niger</em>, a generally recognized as safe (GRAS) microorganism, is frequently used for heterologous protein production, although its expression efficiency is constrained by multiple factors, including gene transcription, metabolic flux distribution, protein folding, and secretion pathways. However, constructing universal <em>Aspergillus niger</em> chassis cells for efficient protein production remains challenging due to the diverse properties of different proteins. With advancements in synthetic biology, numerous molecular biology tools and metabolic engineering strategies have been employed to address these issues. This article summarizes and discusses the latest progress in enhancing heterologous protein production from five dimensions: expression systems, secretion pathways, metabolic flux, intelligent fermentation, and systematic optimization through multi-omics integration. Additionally, it prospects the efficient and sustainable production of heterologous proteins by <em>Aspergillus niger</em>.</div></div>","PeriodicalId":8946,"journal":{"name":"Biotechnology advances","volume":"84 ","pages":"Article 108690"},"PeriodicalIF":12.5,"publicationDate":"2025-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144890812","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Biotechnology advances
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1