BioTechnologia最新文献

In flowering plants, the LEAFY (LFY) gene controls floral meristem activity. In early land plants such as mosses and ferns, it, however, has a minimum role in cell division and development of diploid sporophyte. Homology modeling, an accurate and efficient protein structure prediction method, was used to construct a 3D model of the LEAFY protein in nonflowering and flowering plants. The present study examines the following species: Charophyte green algae, Physcomitrella, Ceratopteris, Picea, and Arabidopsis, as they are the popularly used model organisms for developmental studies. LEAFY protein sequences from the model organisms were aligned by multiple sequence alignment. 3D models of the LEAFY protein from all the model organisms was constructed using the PHYRE2 program with 100% confidence, and the constructed models were evaluated using the MolProbity tool. On the basis of the conserved regions, Charophyte green algae shared 38-46% sequence similarity with Physcomitrella sp., 37-46% similarity with Ceratopteris sp., 33-41% similarity with Picea sp., and 32-38% similarity with Arabidopsis sp. The Motif Finder server identified the protein family domain FLO_LFY and LFY_SAM, whose function is floral meristem development. Secondary structure prediction analysis indicated that the LEAFY protein belongs to the alpha (α) protein class, which is stable against mutation and thus limits structural changes in the LEAFY protein. The study findings reveal two distinct clusters of the LFY gene from the common ancestor green algae. One cluster is present in nonflowering plants that include mosses, pteridophytes, and gymnosperms, and the other cluster is present in flowering plants that include orchids, monocots, dicots, and angiosperms.

Different designs of the plant tissue culture vessel, such as size, material, and shape, may alter its microenvironment atmosphere. The present study was conducted on protocorm-like bodies (PLBs) of Dendrobium Sabin Blue orchid to determine the development of PLBs on plastic and glass culture vessels of different sizes. PLBs were cultured in half-strength Murashige and Skoog (MS) medium with the same initial weight of 0.5 g in 10 replicates. The growth index of the PLBs was calculated after 11 weeks to study their growth in every vessel; additionally, biochemical analysis was performed to determine carbohydrate content, proline concentration, and photosynthesis pigments in the PLBs. Scanning electron microscopy (SEM) was performed to study stomata development on PLBs in each vessel, and histological analyses were conducted to study the cell structure. Overall, the PLBs cultured in a large 470 ml plastic vessel showed successful growth with a high growth index, high carbohydrate content, low-stress condition, and high chlorophyll content. SEM confirmed that the presence of trichome and rhizoid in PLBs cultured in the 470 ml plastic vessel. Histological analysis showed the formation of the shoot on the PLBs and the presence of starch granules. Thus, the use of plastic as a culture vessel provides a good impact for culturing PLBs and has low cost.

Alzheimer's disease (AD) is a brain disorder and the main reason for dementia. In this regard, there is a need to understand the alterations that occur during aging to develop treatment strategies to mitigate or prevent neurodegenerative consequences. Onion and garlic root extracts contain natural polyphenols with high antioxidant capacity; therefore, the present study aimed to investigate the protective effect of these extracts free from mycotoxin contamination on a rat model of AD. Antifungal and antibacterial assays were performed for onion and garlic extracts. Several groups of AD-induced rats were administered 1, 2, and 3 mg/kg onion or garlic extract through intragastric intubation for 30 days. After treatment, histopathological analysis, expression of apoptosis-related genes, and analyses of DNA damage and reactive oxygen species (ROS) generation were conducted in the brain tissues. The results indicate that treatment of AD-induced rats with several doses of onion and garlic root extracts decreased histopathological lesions, the expression levels of apoptotic genes, and the rate of DNA damage and inhibited intracellular ROS generation in the brain tissues. The results suggest that the protective role of onion root extract could be attributed to its content of flavonoids and flavonoid compounds through the improvement of antioxidant capacity and regulation of gene expression patterns. The higher activity levels of free radical scavenging of azino-bis (3-ethylbenzothiazoline-6-sulphonic acid (ABTS) and antioxidant ferric reducing antioxidant power (FRAP) levels found in garlic root extract are most probably responsible for its protective effect against neurodegenerative damage.

Juglone is an allelopathin secreted by black walnut tree of the Juglandaceae family and is used as an active ingredient in many herbal preparations and as a commercial dye. It is considered as an important phytochemical with wide therapeutic potential. Black walnut extract has long been used in folk medicine to treat various types of cancers. It demonstrates antiviral, antibacterial, antifungal, and antitumor activities. The present study aimed to analyze the effect of juglone on the viability and proliferation of melanoma cells of C-32 (amelanotic melanoma) and COLO 829 (melanotic melanoma) cell lines in vitro and on the mRNA expression of genes encoding the proapoptotic BAX protein and caspase 3 and the gene encoding antiapoptotic BCL2 protein. The results showed a dose-dependent effect of juglone on the viability, proliferation, and death induction in C-32 and COLO 829 melanoma cells and in HFF-1 normal dermal fibroblasts in in vitro cultures, but melanoma cells were more sensitive to juglone. Our findings revealed different mRNA expression patterns for all the studied genes in melanoma and normal cells treated with juglone in in vitro cultures.

One of the major pollutants generated from guinea fowl farms and slaughterhouses is guinea fowl feather (GFF) wastes. Chicken feathers are an important substrate for removing aqueous pollutants due to their structural characteristics, but the application of GFFs for such purposes has not been elucidated. This study was carried out to determine the potential of raw as well as chemically and physically pretreated GFFs in the bioremediation of copper (Cu) and zinc (Zn) from aqueous solutions and the subsequent biodegradation of Cu- and Zn-laden GFFs using free and immobilized heavy-metal-tolerant bacteria. Using atomic adsorption spectrometry, the ability of treated and untreated GFFs to adsorb Cu and Zn was determined, and the generated heavy-metal-laden GFFs were degraded using Pseudochrobactrum sp. IY-BUK1. The results revealed that under optimized conditions, acetone and autoclave pretreatment enhanced Cu and Zn removal by 40% within 6 h when compared with raw GFFs. Similarly, complete biodegradation of Cu- and Zn-laden GFFs was achieved at pH 8, with 2% inoculum size, and at 25°C using IY-BUK1 in 7 days. Upon optimization of physical and nutritional conditions, using one factor at a time and response surface methodology, the maximum keratinase activity was achieved at 30°C, with 3% inoculum size and 3.5% polluted GFF concentration in 3 h. The degradation and keratinase activity were further enhanced by 50% by the immobilization of Pseudochrobactrum sp. IY-BUK1 cells compared with free cells. Thus, GFFs can act as good biosorbents, and together with IY-BUK1, the use of GFFs can be an alternative approach to dispose of GFFs, thus preventing environmental pollution via bioremediation.

Coronavirus disease 2019 caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has affected 235.6 million people worldwide. In the present study, RNA-dependent RNA polymerase (RdRp) (PDB Id: 6M71) of SARS-CoV-2, an essential enzyme needed for subgenomic replication and amplification of RNA, was selected. Similar to other RdRps, it is a conserved protein and a popular target for antiviral drug therapy. Based on a computational approach, potential RdRp inhibitors were identified. The absorption, distribution, metabolism, excretion, and toxicity (ADMET) of selected molecules were determined using computation tools. The potential inhibitors were docked to the RdRp and later confirmed by Molecular Dynamics (MD) using the "Flare" module of Cresset software. Drummondin E and Flinderole B had higher drug similarity scores among the compounds selected in this study. Both these compounds are noncarcinogenic, nonirritant, nontumorigenic, and nonmutagenic. Molecular docking studies showed that both compounds can bind to RdRp. The best ligand interaction patterns were validated by MD using the "Flare" module. MD was performed for the period of 100 ns with the time step of 1 fs. The simulation results suggest that Thr-680, Arg-624, Lys-676, and Val-557 are key interacting partners in the Drummondin E-RdRp complex, while Asp-618, Asp-760, Asp-623, Arg-624, and Asp-761 are the interacting partners in the Flinderole B-RdRp complex. Based on the in silico drug-likeness score; ADMET properties; and molecular simulation result, we surmise that Flinderole B and Drummondin E could impede SARS-CoV-2 genome replication and transcription by targeting the RdRp protein.

Shea tree (Vitellaria paradoxa) is an essential tree crop with great potential economic value mainly because of its seed oil (shea butter) which is of high demand for manufacturing assorted products in food, cosmetic, and rubber industries. Propagation of this species is, however, hindered by relative unavailability of seed (nuts), erratic seed germination, a long vegetative phase, and latex exudation from cuttings. Thus, another method of propagation through in vitro culture is recommended for rapid multiplication of shea genotypes for large-scale cultivation. In the present study, the effects of two cytokinins, namely, 6-benzylaminopurine (BAP) and kinetin (KIN), and one auxin, namely 1-naphthaleneacetic acid (NAA), on shoot and/or root induction in vitro were assessed at various combinations/concentrations. The inclusion of these growth regulators in the culture medium significantly improved (P < 0.05) shoot/root regeneration over the controls. The highest shoot regeneration percentage (100%) was obtained on Murashige and Skoog (MS) basal medium supplemented with 2 mg ∙ dm^-3 KIN + + 0.5 mg ∙ dm^-3 NAA or 1.5 mg ∙ dm^-3 KIN within 7/8 days of inoculation. This medium (2 mg ∙ dm^-3 KIN + + 0.5 mg ∙ dm^-3 NAA) showed the highest mean shoot length of 3.24 cm. Compared to KIN, BAP was more effective in inducing vigorous shoot growth. However, rooting was induced only on MS medium modified with 1 mg ∙ dm^-3 BAP + 0.5 mg ∙ dm^-3 NAA. These findings can serve as baseline information for in vitro, commercialscale propagation of shea tree.

Improved agricultural practices and rapid industrialization have led to huge waste generation, and the management of this waste is becoming a global concern. The process of vermicomposting has emerged as a method of choice for converting waste into useful manure, with evidence of increase in crop productivity. During vermi-composting, the collective activities of decomposing microorganisms and earthworms lead to the humification of organic/inorganic waste, thereby generating the final product called vermicompost. Different types of industrial wastes such as waste from paper industries, tanneries, sugar mills, and pulp and textile industries have been effectively converted to vermicompost and successfully used to improve plant growth. The vermicompost thus formed was also demonstrated to increase the production of pharmaceutically important plant secondary meta-bolites such as withanolides and polyunsaturated fatty acids. Microbial amendment with different bacterial and fungal strains during vermicomposting further proves to be beneficial by increasing nitrogen content, decomposing organic waste, providing aeration, and stabilizing the vermicompost. These microorganisms after passing through the earthworm's intestine increase in numbers in the vermicast, thus becoming enriched in vermi-compost, which is particularly important for their use as biofertilizers. The precise role of different microbial pretreatments in improving the quality of vermicompost generated from industrial and agricultural waste is, however, not completely understood. To fill this gap in knowledge, the present article aims to review published literature to highlight the potential of microbial amendment during vermicomposting for bioremediation of industrial and agricultural waste. Microbial pre-composting followed by vermicomposting emerges as an eco-friendly and economical approach for managing agricultural and industrial waste.

Background: A research was conducted on the ultrasonic pretreatment of chicken droppings for biogas production. The hydrolysis step in anaerobic digestion is rate-limiting and time-consuming due to the presence of complex molecules in the organic wastes. Pretreatment encourages faster digestion and yields improvement by making the organic waste ready for microbial attack.

Material and methods: To achieve the optimum sonication time and slurry ratio for maximum biogas production, Response Surface Methodology (RSM) was used in this study. 13 experimental runs were developed according to Central Composite Design with different setup conditions and five replicates at center points to observe the Response, i.e., volumes of biogas produced. This was achieved with the aid of a software package (Design Expert 12.0.1.0). A quadratic model was developed for the responses and a 3D response surface plot was obtained to analyze the effect of the variables and their interactions to determine their optimum levels.

Results: The numerical optimization and point prediction result gave a sonication time of 18.6 minutes and a slurry ratio of 2.0 (i.e., 2.0 : 1.0). Under this condition, the predicted maximum volume of biogas production is 24.514 ml in 12 days. This prediction was tested and validated, and the volume of biogas produced under the same conditions was 22.282 ml. This confirmed the adequacy of the predicted model as only a 10.02% error was recorded.

Conclusions: Henceforth, the optimum sonication time and slurry ratio were achieved for maximum biogas production from chicken droppings.

This comparative study aimed to evaluate the effects of different drying methods such as solar drying, shade drying (SHD), freeze drying (FD), oven drying, and microwave drying on the physicochemical properties, bioactive components, and antioxidant activity of Centella asiatica. The results showed that out of all the treated samples, FD-treated samples showed the lowest moisture content (2.4%), the lowest water activity (0.24%), and the highest rehydration ratio (5.51%). For samples treated using different drying methods, significant differences in Commission on Illumination - LAB (L *, a *, and b *) values and total color difference (E ) were observed. FD-treated samples showed the minimum color change (E ) and highest lightness (L *). Additionally, upon Fourier-transform infrared spectral analysis, no major changes in the functional groups were observed between C. asiatica leaves processed using different drying methods. FD-treated samples showed the highest antioxidant activity followed by SHD-treated samples, as measured by 2,2-diphenyl-1-picrylhydrazyl and 2,2-azino-bis-3-ethylbenzo-thiazoline-6-sulphonic acid radical scavenging assays. The phenolic (chlorogenic acid, rutin, kaempferol, and quercetin) and triterpene saponin (madecassoside, asiaticoside, madecassic acid, and asiatic acid) contents of the dried samples of C. asiatica were measured using high-performance liquid chromatography, which showed that the FD method allowed for the highest retention of phenolic and triterpene saponins among the tested drying techniques. The physicochemical characteristics, antioxidant potential, and bioactive retention of the samples that underwent FD treatment were superior to those of other methods, and therefore, FD can be employed as the first-line drying technique for processing C. asiatica leaves.