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Exploring the phytohormonal crosstalk during embryonic journey and germination process of Vateria indica L. seeds utilizing LCMS/MS technology 利用 LCMS/MS 技术探索大叶女贞种子胚胎和萌发过程中植物激素的相互作用
IF 1.6 4区 生物学 Pub Date : 2024-03-09 DOI: 10.1007/s40415-024-00987-z
G. P. Gayatri, K. G. Ajith Kumar, K. V. Baiju, J. B. Hyzil

Vateria indica L. is an endangered tree species indigenous to South Western-Ghats regions of India, which is of immense economic importance. The natural regeneration process of this species is hindered by many factors including seed recalcitrance, which is a major problem hindering its natural regeneration, thus posing a great challenge in its seed storage and conservation. Recalcitrant seeds show marked differences from orthodox seeds in development. The onset of different stages is marked by a definite peaking and lowering of phytohormones and this hormonal pattern varies in orthodox and recalcitrant seeds. Phytohormonal dynamics in recalcitrant seeds, is a poorly investigated area and the present investigation was undertaken with a view to understand the hormonal changes during embryogeny and germination in this recalcitrant species. We have tested fifteen plant growth regulators simultaneously to get a better understanding about their role in embryogeny and germination. During April–July 2020, seeds were collected from their native habitats in the South Western-Ghats. From the randomly selected seeds, the embryonic tissues were chopped and frozen for LC–MS/MS hormonal profiling. The triplet hormonal interplay (between auxin, cytokinin and gibberellins) was found to be very crucial for the development of the embryo in Vateria indica L. In the present study, we can see a clear antagonism of cis Jasmonate with Brassinosteroid, cis Jasmonate declining during seed shed (14.44 ± 0.39 ng g-1fw) and germination phases, while Brassinosteroid increasing during these phases (32.24 ± 1.69 ng g-1fw). A clear hormonal interplay can also be seen between Auxin (Indole-3 Butyric acid—45.44 ± 0.3 ng g-1fw) and Brassinosteroid (24epi-Brassinolide—32.24 ± 1.69 ng g-1fw) at the time of seed germination. Phytohormone interplay and crosstalk provides an emerging knowledge about connections between phytohormones which are pivotal for growth and development and even stress responses in plants.

Graphical abstract

Chromatogram of Phytohormones.

Chromatogram of Phytohormones -X axis represents time and Y axis represents absorbance A, B and C—In Negative mode (ES-): Salicylic acid, IAA, IBA, JA, Benzene Adenine, ABA, GA-7, GA-4, GA-3, Epibrassinolide. D, E and F—In Positive mode (ES +): ACC, Cis-Jasmonate, Zeatin, Methyl Jasmonate and Trans Zeatin Riboside.

Chromatogram of Phytohormones. X axis represents time and Y axis represents absorbance D and E—In Negative mode (ES-): Salicylic acid, IAA, IBA, JA, Benzene Adenine, ABA, GA-7, GA-4, GA-3, Epibrassinolide. I and J—In Positive mode (ES +): ACC, Cis-Jasmonate, Zeatin, Methyl Jasmonate and Trans Zeatin Riboside.

Vateria indica L. 是印度西高止山脉南部地区的一种濒危树种,具有极其重要的经济价值。该树种的自然再生过程受到许多因素的阻碍,其中包括种子的抗逆性,这是阻碍其自然再生的一个主要问题,因此对其种子贮藏和保护提出了巨大挑战。顽固种子在发育过程中与正统种子存在明显差异。不同阶段开始时,植物激素会出现明确的高峰和低谷,这种激素模式在正统种子和顽固种子中各不相同。对顽固种子的植物激素动态研究较少,本研究旨在了解这种顽固物种在胚胎发育和萌发过程中的激素变化。我们同时测试了 15 种植物生长调节剂,以更好地了解它们在胚胎形成和萌发过程中的作用。2020 年 4 月至 7 月期间,我们从南西高止山脉的原生栖息地采集了种子。从随机挑选的种子中切碎并冷冻胚胎组织,用于 LC-MS/MS 激素分析。在本研究中,我们可以看到顺式茉莉酸盐与芸苔素类固醇的明显拮抗作用,顺式茉莉酸盐在种子脱落期(14.44 ± 0.39 ng g-1fw)和萌芽期下降,而芸苔素类固醇在这些阶段上升(32.24 ± 1.69 ng g-1fw)。在种子萌发期,还可以看到菊粉(吲哚-3 丁酸-45.44 ± 0.3 ng g-1fw)和类芸苔素(24epi-Brassinolide-32.24 ± 1.69 ng g-1fw)之间明显的激素相互作用。植物激素的相互作用和相互影响提供了有关植物激素之间联系的新知识,而植物激素对植物的生长发育乃至胁迫反应至关重要:水杨酸、IAA、IBA、JA、苯腺嘌呤、ABA、GA-7、GA-4、GA-3、表紫苏内酯。D、E 和 F-阳性模式(ES +):植物激素色谱图。X 轴代表时间,Y 轴代表吸光度 D 和 E-负模式(ES-):水杨酸、IAA、IBA、JA、苯腺嘌呤、ABA、GA-7、GA-4、GA-3、表紫草素内酯。I 和 J-阳性模式(ES +):ACC、顺式茉莉酸盐、玉米素、甲基茉莉酸盐和反式玉米素核苷。
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引用次数: 0
Reproductive ecology of a threatened medicinal plant Canscora alata (Roth) Wall 受威胁药用植物 Canscora alata (Roth) Wall 的生殖生态学
IF 1.6 4区 生物学 Pub Date : 2024-03-08 DOI: 10.1007/s40415-024-00994-0

Abstract

Canscora alata (Roth) Wall. (Gentianaceae) commonly known as Shankhapushpi, is an annual herbaceous threatened medicinal plant distributed mainly in the understory of wild Sal (Shorea robusta Gaertn.) forest and demands immediate conservation measures, for which understanding of its reproductive ecology is important. We studied aspects of floral biology, reproductive phenology and the breeding systems of the plant species. While undertaking the experiments, it was found that the species is self-compatible with a greater capability of autonomous self-pollination and doesn’t depend largely on pollinators for seed sets. However, geitonogamous and xenogamous modes of reproduction were observed. In natural habitat, visitors' frequency was extremely low, and most of the time they were absent. Outcrossing is rare, but it is occasionally facilitated by the fly, Paragus (Paragus) Latreille. We observed an "open-close-reopen" flowering rhythm during the anthesis of a flower. The mode of floral development clearly indicates that autonomous self-pollination is favored by the movement of stamens, styles, and stigmas during its “open-close-reopen” pattern of flowering. The plant also exhibits a larger anisomorphic stamen, orange in color. Even though the “fail safe” mechanism is an adaptive trait seen in outcrossing plant species, we have observed it here as well. The larger anisomorphic stamen helped to pollinate in order to ensure reproductive assurance through a delayed selfing mechanism; this is a rare occurrence in autogamous species. Despite self-compatibility, the ability to produce fruits and seeds through hand cross-pollination treatments implies that the plant species follow a selfing-outcrossing strategy to assure successful reproduction in its natural habitat. We hope these findings will be useful in strategic planning for the conservation of this plant species.

摘要 Canscora alata (Roth) Wall.(龙胆科)俗称 Shankhapushpi,是一种一年生草本植物,主要分布于野生 Sal(Shorea robusta Gaertn.)林下,是一种濒危药用植物,需要立即采取保护措施,而了解其生殖生态学则非常重要。我们研究了该植物物种的花生物学、生殖物候学和繁殖系统。在实验过程中,我们发现该物种具有较强的自主自花授粉能力,并在很大程度上不依赖授粉者来结籽。不过,也观察到了异花授粉和异花授粉的繁殖模式。在自然栖息地,来访者的频率极低,大部分时间都没有来访者。杂交非常罕见,但偶尔会通过苍蝇 Paragus (Paragus) Latreille 进行。我们观察到,在一朵花的开花期,有一个"开放-闭合-再开放"的开花节律。花的发育模式清楚地表明,在 "开-闭-开 "的开花模式中,雄蕊、花柱和柱头的移动有利于自主自花授粉。该植物还表现出较大的异形雄蕊,呈橙色。尽管 "故障安全 "机制是外交植物物种的一种适应性特征,但我们在这里也观察到了。较大的异形雄蕊有助于授粉,以通过延迟自交机制确保生殖保证;这在自交物种中很少见。尽管自交不亲和,但通过人工异花授粉处理产生果实和种子的能力意味着该植物物种遵循自交-异交策略,以确保在自然栖息地成功繁殖。我们希望这些发现对保护该植物物种的战略规划有所帮助。
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引用次数: 0
Light and dispersal strategies structure palm community along an elevation gradient in the Atlantic Forest 大西洋森林海拔梯度上棕榈群落的光照和扩散策略结构
IF 1.6 4区 生物学 Pub Date : 2024-03-07 DOI: 10.1007/s40415-024-00982-4
Sara Lucía Colmenares-Trejos, Rita de Cássia Quitete Portela, Alexandra Pires Fernandez, Maria Isabel Guedes Braz, Eduardo Arcoverde de Mattos

Light availability and seed dispersal can play a determinant role for plant growth and survival. The intricate interplay among these factors, coupled with pronounced topographic and elevational variation, may influence forest composition and structure. Despite the structural significance of palms within the Atlantic Forest, they are scarcely represented in both inventories and ecological studies. Additionally, functional trait variation among palm species is barely tested, and species are usually categorized into one or two functional types. We examined a palm community in terms of floristic composition and species replacement along an elevation gradient from 0 to 1400 m. Furthermore, we measured a set of morpho-physiological traits strongly associated with growth and survival strategies, such as photosynthetic capacity through Rapid Light Curves, leaf traits, height and fruit size and number. Our findings reveal highest richness from 300 to 800 m. Otherwise, palm density increased along elevation, peaking after 1200 m, mainly associated with E. edulis increase in density along elevation. Additionally, traits associated with enhanced light capture and dispersal capacity, i.e., higher photosynthetic capacity, height, and fruit number, were common among species widely distributed along the entire elevation gradient, such as Euterpe edulis M. and Geonoma schottiana M. In contrast, species with narrower distributions, exhibit the opposite traits. In conclusion, in our study area there is an integral role of light response and dispersal capacity in shaping the palm community structure in the Atlantic Forest along an elevation gradient from 0 to 1400 m.

光照和种子传播对植物的生长和存活起着决定性作用。这些因素之间错综复杂的相互作用,再加上明显的地形和海拔差异,可能会影响森林的组成和结构。尽管棕榈树在大西洋森林中具有重要的结构意义,但在清查和生态研究中却很少见到它们的身影。此外,棕榈树物种之间的功能性状变异几乎没有被测试过,物种通常被划分为一种或两种功能类型。此外,我们还测量了一系列与生长和生存策略密切相关的形态生理特征,如通过快速光照曲线测量光合能力、叶片特征、高度、果实大小和数量等。我们的研究结果表明,海拔 300 米至 800 米处的棕榈物种丰富度最高,其他地区的棕榈密度随海拔升高而增加,1200 米后达到峰值,这主要与 E. edulis 的密度随海拔升高而增加有关。此外,在整个海拔梯度上分布广泛的物种(如 Euterpe edulis M.和 Geonoma schottiana M.)中,与增强光捕获和传播能力有关的特征(即较高的光合能力、高度和果实数量)很常见。总之,在我们的研究区域,光响应和扩散能力对大西洋森林中从 0 米到 1400 米海拔梯度的棕榈群落结构的形成起着不可或缺的作用。
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引用次数: 0
The ability of plants leaves tissue to change polarization state of polarized laser radiation 植物叶片组织改变偏振激光辐射偏振态的能力
IF 1.6 4区 生物学 Pub Date : 2024-03-07 DOI: 10.1007/s40415-024-00988-y
Yuriy N. Kulchin, Sergey O. Kozhanov, Alexander S. Kholin, Vadim V. Demidchik, Evgeny P. Subbotin, Yuriy V. Trofimov, Kirill V. Kovalevsky, Natalia I. Subbotina, Andrey S. Gomolsky

The main purpose of this work was to confirm the previously proposed model of the laser radiation interaction with the epidermal layer of monocotyledons cells. The other purpose was to show that plant age affects polarization parameters and polarization direction affects plant development. The methods used in this work include the development of LED light sources, the polarization parameters assessment (polarization index), and statistical analysis. The maize plants (Zea mays L.), variety “Early gourmet 121,” optical setup, and software TXP Series Instrumentation were used in the work. Plants were grown under white light at an intensity of 200 µmol m−2 s−1. The study established that the harmonic ellipticity polarization change by ± 12.0° occurs when the linearly polarized light passed through the maize leaves depending on the axis rotation angle of the epidermal cells. In addition, it was shown that the maize leaves of different ages could have different values of the refractive index anisotropy and, consequently, different polarization ellipticity index. It has been established that the maize leaves with ordered structure of epidermal cells are able to change the polarized radiation ellipticity. That confirms the previously proposed model of the polarized light interaction with plant leaves. We established that linearly polarized light passing through the leaves of maize plants turns into elliptically polarized light, which is able to interact more effectively with the photosensitive protein structures of the leaf inner cells.

这项工作的主要目的是证实之前提出的激光辐射与单子叶细胞表皮层相互作用的模型。另一个目的是证明植物年龄会影响偏振参数,偏振方向会影响植物发育。这项工作采用的方法包括 LED 光源的开发、偏振参数评估(偏振指数)和统计分析。工作中使用了玉米植株(Zea mays L.)、品种 "Early gourmet 121"、光学装置和软件 TXP 系列仪器。植物在强度为 200 µmol m-2 s-1 的白光下生长。研究发现,当线性偏振光穿过玉米叶片时,谐波椭圆度偏振变化为 ± 12.0°,这取决于表皮细胞的轴旋转角度。此外,研究还表明,不同年龄的玉米叶片可能具有不同的折射率各向异性值,从而具有不同的偏振椭圆度指数。研究证实,表皮细胞结构有序的玉米叶片能够改变偏振辐射椭圆度。这证实了之前提出的偏振光与植物叶片相互作用的模型。我们确定,线偏振光通过玉米植物叶片时会变成椭圆偏振光,后者能够更有效地与叶片内部细胞的光敏蛋白质结构相互作用。
{"title":"The ability of plants leaves tissue to change polarization state of polarized laser radiation","authors":"Yuriy N. Kulchin, Sergey O. Kozhanov, Alexander S. Kholin, Vadim V. Demidchik, Evgeny P. Subbotin, Yuriy V. Trofimov, Kirill V. Kovalevsky, Natalia I. Subbotina, Andrey S. Gomolsky","doi":"10.1007/s40415-024-00988-y","DOIUrl":"https://doi.org/10.1007/s40415-024-00988-y","url":null,"abstract":"<p>The main purpose of this work was to confirm the previously proposed model of the laser radiation interaction with the epidermal layer of monocotyledons cells. The other purpose was to show that plant age affects polarization parameters and polarization direction affects plant development. The methods used in this work include the development of LED light sources, the polarization parameters assessment (polarization index), and statistical analysis. The maize plants (<i>Zea mays</i> L.), variety “Early gourmet 121,” optical setup, and software TXP Series Instrumentation were used in the work. Plants were grown under white light at an intensity of 200 µmol m<sup>−2</sup> s<sup>−1</sup>. The study established that the harmonic ellipticity polarization change by ± 12.0° occurs when the linearly polarized light passed through the maize leaves depending on the axis rotation angle of the epidermal cells. In addition, it was shown that the maize leaves of different ages could have different values of the refractive index anisotropy and, consequently, different polarization ellipticity index. It has been established that the maize leaves with ordered structure of epidermal cells are able to change the polarized radiation ellipticity. That confirms the previously proposed model of the polarized light interaction with plant leaves. We established that linearly polarized light passing through the leaves of maize plants turns into elliptically polarized light, which is able to interact more effectively with the photosensitive protein structures of the leaf inner cells.</p>","PeriodicalId":9140,"journal":{"name":"Brazilian Journal of Botany","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2024-03-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140074314","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In silico genome-wide analysis of Citrus sinensis (L.) Osbeck NHX and KEA genes and their roles in abiotic stress 对 Citrus sinensis (L.) Osbeck NHX 和 KEA 基因及其在非生物胁迫中作用的全基因组硅学分析
IF 1.6 4区 生物学 Pub Date : 2024-03-05 DOI: 10.1007/s40415-024-00981-5

Abstract

Citrus sinensis (L.) Osbeck is a valuable plant belonging to the Rutaceae family. Stress is induced in plants by abiotic factors such as drought, salinity, and temperature. The monovalent cation proton antiporter (CPA) superfamily, which includes the K+ efflux antiporter (KEA) and Na+/H+ exchanger (NHX) genes, plays a crucial role in the regulation of physiological events. This study aims to identify the KEA and NHX genes of C. sinensis and elucidate the roles of these genes in the response to abiotic stress. For this purpose, phylogenetic structure, distribution of chromosomes, gene duplications, gene and protein structures, cis-acting elements, functional gene ontologies, targeted miRNAs, and in silico PCR primer searches were performed using CsNHX and CsKEA sequences. Two KEA and fifty-five NHX were identified as a result of the analysis. Nine of the fifty-five genes (CsNHX5, CsNHX11, CsNHX12, CsNHX17, CsNHX27, CsNHX28, CsNHX47,CsNHX48, and CsNHX55) have been identified as playing a role in the stress response. On the phylogenetic tree, NHX genes were observed to be divided into three distinct clusters. The existence of multiple segmental and tandem duplications in the CsNHX genes has been demonstrated. Stress-related motifs were identified in the promoter regions of CsKEA and CsNHX by cis-acting element analysis, while stress-related miRNAs were identified by miRNA analysis. Consequently, KEA genes are responsible for transport, but they may also play a role in abiotic stress, as they contain cis-acting elements involved in the stress response and are targeted by miRNAs associated with stress. In addition, it has been determined that CsNHX5, which plays a role in the stress response, has the potential to be used in future transgenic plant production studies as it satisfies the PCR in silico criteria.

摘要 柑橘(Citrus sinensis (L.) Osbeck)属于芸香科,是一种珍贵的植物。干旱、盐度和温度等非生物因素会对植物产生胁迫。单价阳离子质子拮抗剂(CPA)超家族包括 K+ 外流拮抗剂(KEA)和 Na+/H+ 交换剂(NHX)基因,在生理事件的调控中起着至关重要的作用。本研究旨在鉴定中华鳖的 KEA 和 NHX 基因,并阐明这些基因在非生物胁迫响应中的作用。为此,研究人员利用 CsNHX 和 CsKEA 序列进行了系统发育结构、染色体分布、基因重复、基因和蛋白质结构、顺式作用元件、功能基因本体、目标 miRNAs 和硅 PCR 引物搜索。分析结果确定了两个 KEA 和 55 个 NHX。这 55 个基因中有 9 个(CsNHX5、CsNHX11、CsNHX12、CsNHX17、CsNHX27、CsNHX28、CsNHX47、CsNHX48 和 CsNHX55)被确定在应激反应中发挥作用。在系统发生树上,NHX 基因被观察到分为三个不同的群。CsNHX 基因存在多个节段和串联重复。通过顺式作用元件分析,在 CsKEA 和 CsNHX 的启动子区域发现了与应激有关的图案,而通过 miRNA 分析则发现了与应激有关的 miRNA。因此,KEA 基因负责运输,但也可能在非生物胁迫中发挥作用,因为它们含有参与胁迫反应的顺式作用元件,并被与胁迫相关的 miRNA 靶向。此外,还确定了在应激反应中发挥作用的 CsNHX5 有可能用于未来的转基因植物生产研究,因为它符合 PCR in silico 标准。
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引用次数: 0
Islands in the middle of the forest: size, distance and tree structure drive vascular epiphytes composition in Amazonia white-sand ecosystems 森林中央的岛屿:亚马孙白沙生态系统中维管束附生植物组成的大小、距离和树木结构驱动因素
IF 1.6 4区 生物学 Pub Date : 2024-03-05 DOI: 10.1007/s40415-024-00985-1

Abstract

Environmental factors and structural characteristics associated with tree communities influence patterns of diversity, and distribution of structurally dependent plants, such as vascular epiphytes. In this study, we investigated the diversity, composition, and structure of vascular epiphytes among five areas of white-sand ecosystems (WSEs or campinaranas), which are considered "islands" of vegetation immersed in other forest matrices, in the Central Amazon, Brazil. We tested the following hypotheses: (1) turnover is the main mechanism that drives beta diversity, (2) the epiphyte communities are geographically structured, with nearby areas sharing a greater number of species, (3) the floristic composition of vascular epiphytes differs between WSE areas and presents typical species in each of them, and (4) the size of the area, the distance from the adjacent forest matrix and the structural characteristics of the tree vegetation influence the composition and distribution of vascular epiphyte communities in the WSE. A total of 17,808 epiphyte individuals were recorded on 486 phorophytes. Our results indicate spatial turnover in the vascular epiphyte composition between WSEs studied. The size of the WSE, the distance from adjacent environments, and structural variables of vegetation (average canopy height and basal area) influence the distribution of vascular epiphytes in the WSEs. In addition, we observed that the communities have geographical structuring, with nearby areas sharing a greater number of taxa among themselves; however, the characteristic species and the epiphytic importance value are different between the areas. Differences in epiphyte communities between areas indicate that each WSe is unique; therefore, the conservation of multiple areas is necessary to preserve the diversity of epiphytes in these ecosystems.

摘要 与树木群落相关的环境因素和结构特征会影响维管附生植物等依赖结构的植物的多样性和分布模式。在这项研究中,我们调查了巴西亚马逊中部五个白沙生态系统(WSEs 或 campinaranas)地区的维管附生植物的多样性、组成和结构。我们对以下假设进行了检验:(1)更替是驱动贝塔多样性的主要机制;(2)附生植物群落具有地理结构性,附近地区共享更多的物种;(3)不同 WSE 地区的维管附生植物的植物学组成不同,每个地区都有典型的物种;(4)地区的大小、与邻近森林基质的距离以及树木植被的结构特征会影响 WSE 中维管附生植物群落的组成和分布。在 486 棵叶状植物上共记录了 17 808 个附生植物个体。我们的研究结果表明,维管附生植物的组成在所研究的 WSE 之间存在空间变化。WSE 的大小、与邻近环境的距离以及植被的结构变量(平均冠层高度和基部面积)都会影响维管附生植物在 WSE 中的分布。此外,我们还观察到群落具有地理结构性,邻近地区之间共享的类群数量较多;但是,不同地区之间的特征物种和附生植物重要性值却不同。不同地区之间附生植物群落的差异表明,每个 WSe 都是独一无二的;因此,有必要对多个地区进行保护,以保持这些生态系统中附生植物的多样性。
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引用次数: 0
Rare teratologies in natural populations of Ophioglossum L exhibiting development of spores on tropophylls (leaves) Ophioglossum L 自然种群中罕见的畸形,表现为孢子在叶片上发育
IF 1.6 4区 生物学 Pub Date : 2024-03-05 DOI: 10.1007/s40415-024-00986-0

Abstract

A few biotypes (plants possessing abnormal features) of Goswamia costata Zhang and Zhang, partly resembling Ophioglossum rubellum Welw. ex A. Braun, are presented out of which finding of the development of spores on the tropophyll (leaf) of plants is exceedingly important.

Most alarming feature is that the spores on leaves do not resemble spores produced by the sporangia in the sporophore (fertile spike) of the parent plant, a trait only so far described by the senior author more than two decades ago on margins of Ophioglossum eliminatum Khandelwal and Goswami and Ophioglossum costatum A Br, (now—Goswamia eliminata Zhang and Zhang; Goswamia costata Zhang and Zhang, respectively). The repeated observations of development of spores in cluster on the margins of tropophyll (leaf) from altogether different regions and localities in a different species do confirm that genes for the production of sporangia on the leaves are inherent within the genome of ophioglossaceous genera. Preliminary SEM investigations on spores have revealed unique secondary extensions of exine ornamentations with tubular outgrowths, never reported in any of the ophioglossaceous species.

摘要 本文介绍了 Goswamia costata Zhang 和 Zhang 的一些生物型(具有异常特征的植物),这些生物型部分类似于 Ophioglossum rubellum Welw.最令人震惊的是,叶片上的孢子与母株孢子囊(可育穗状花序)中的孢子囊产生的孢子并不相似,这一特征迄今为止只有资深作者在二十多年前对 Ophioglossum eliminatum Khandelwal 和 Goswami 以及 Ophioglossum costatum A Br(分别为现在的 Goswamia eliminata Zhang 和 Zhang;Goswamia costata Zhang 和 Zhang)的边缘进行过描述。从不同地区和不同地点对不同物种滋养叶(叶片)边缘孢子群发育的反复观察,确实证实了在叶片上产生孢子囊的基因是ophioglossaceous 属植物基因组中固有的。对孢子进行的初步扫描电子显微镜研究发现,外皮装饰的次生延伸具有独特的管状突起,这在任何鹅掌菌属物种中都从未报道过。
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引用次数: 0
Study on somatic embryogenesis of cinnamomum camphora based on transcriptome sequencing 基于转录组测序的樟树体细胞胚胎发生研究
IF 1.6 4区 生物学 Pub Date : 2024-03-04 DOI: 10.1007/s40415-024-00984-2
Yilang Liu, Haoran Guo, Xiaoling Kang, Rui Wu, Meijing Yuan, Li Du

In this study, non-embryogenic callus (NEC), embryogenic callus (EC), and somatic embryos (SE) sourced from various culture materials were employed to investigate somatic embryogenesis in Cinnamomum camphora. Utilizing RNA-Seq technology, we conducted transcriptome sequencing and analysis of C. camphora culture materials to elucidate the genes and metabolic pathways associated with somatic embryogenesis. Correlation analysis among the samples indicated substantial differences between the groups, confirming the representativeness of the three materials utilized. The analysis revealed three distinct databases of differentially expressed genes (DEGs) (SE vs EC, SE vs NEC, EC vs NEC) containing 10,449, 9,561, and 8,867 DEGs, respectively. Clustering analysis of DEGs unveiled significant separation among SE, EC, and NEC from different C. camphora materials. Notably, 21 genes were significantly up-regulated in SE and EC compared to NEC, predominantly comprising adversity stress-responsive genes, hormone-responsive genes, and zinc finger proteins. Of particular interest was the expression of the VACUOLAR IRON TRANSPORTER 1 (VIT1) gene, which was 78.33 and 3.05 times higher in SE than in NEC and EC, respectively. This suggests a potential crucial regulatory role for Fe2+ in C. camphora somatic embryogenesis. Further analysis of DEGs, in conjunction with Gene Ontology (GO) enrichment, unveiled a close association of C. camphora somatic embryogenesis with biological processes, transcriptional regulation, responses to salt stress and abscisic acid, cell nucleus activity, and DNA-binding transcription factors. Moreover, KEGG pathway analysis emphasized the significant enrichment of DEGs in plant hormone signal transduction, featuring 187 differential genes, highlighting the pivotal role of hormone signaling in C. camphora somatic embryogenesis. Most genes related to phytohormone synthesis, signal transduction, transcription factors, and stress responses were up-regulated, thereby promoting somatic embryogenesis in C. camphora. The findings of this study provide valuable insights into the molecular mechanisms underlying somatic embryogenesis in C. camphora and related species.

在本研究中,我们利用来自不同培养材料的非胚性胼胝体(NEC)、胚性胼胝体(EC)和体细胞胚(SE)来研究樟树的体细胞胚胎发生。利用 RNA-Seq 技术,我们对樟树培养材料进行了转录组测序和分析,以阐明与体细胞胚胎发生相关的基因和代谢途径。样本间的相关性分析表明,各组之间存在很大差异,这证实了所使用的三种材料具有代表性。分析发现了三个不同的差异表达基因(DEGs)数据库(SE vs EC、SE vs NEC、EC vs NEC),分别包含 10,449 个、9,561 个和 8,867 个 DEGs。DEGs 的聚类分析揭示了来自不同樟树材料的 SE、EC 和 NEC 之间的显著差异。值得注意的是,与NEC相比,SE和EC中有21个基因明显上调,主要包括逆境应激反应基因、激素反应基因和锌指蛋白。特别值得关注的是VACUOLAR IRON TRANSPORTER 1(VIT1)基因的表达量,它在SE中的表达量分别是NEC和EC的78.33倍和3.05倍。这表明,Fe2+ 在樟树体细胞胚胎发生过程中可能起着关键的调控作用。结合基因本体论(Gene Ontology,GO)富集对 DEGs 的进一步分析表明,樟树体细胞胚胎发生与生物过程、转录调控、对盐胁迫和脱落酸的反应、细胞核活性和 DNA 结合转录因子密切相关。此外,KEGG通路分析强调了DEGs在植物激素信号转导中的显著富集,共有187个差异基因,突出了激素信号转导在樟树体细胞胚胎发生中的关键作用。大多数与植物激素合成、信号转导、转录因子和胁迫反应相关的基因都被上调,从而促进了樟树的体细胞胚胎发生。本研究的发现为了解樟科植物及相关物种体细胞胚胎发生的分子机制提供了宝贵的信息。
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引用次数: 0
Root system architecture in cereals: exploring different perspectives of the hidden half 谷物的根系结构:从不同角度探索隐藏的一半
IF 1.6 4区 生物学 Pub Date : 2024-03-04 DOI: 10.1007/s40415-024-00991-3
Ambika Sharma, Pooja Saini, Pawan Saini, Vikrant Tyagi, Sushma Sharma, Naseer Ahmed, Harcharan Singh Dhaliwal, Imran Sheikh

Roots are important organs associated with water and nutrient uptake from soil to all the plant parts. Besides plant metabolite storage organ, it also provides anchorage and mechanical support. The root “hidden half” plays a decisive role in root system architecture trait to affect grain yield and abiotic stress tolerance. Genetic study of root trait harbored due to the complex nature of root and unavailability of the rhizosphere. Identification of root system architecture provides a basic understanding of plant fitness, crop performance and grain yield. With increasing interest in root phenotyping, breeders overcome these barriers through the development of advanced phenotyping platforms based on field, laboratories and greenhouses such as soil coring, hydroponics, GLO-roots, rhizotron and mini-rhizotron. The advanced 2-D, 3-D and 4-D root imaging techniques such as magnetic resonance technique, RGB imaging, infrared thermal imaging and X-ray computed tomography are complex, but it gives the most desirable and accurate results to understand the root system architecture. This review focused on root architecture studies methods for root phenotyping using advanced recent techniques.

根是植物各部分从土壤中吸收水分和养分的重要器官。除了储存植物代谢物外,它还提供锚固和机械支撑。根的 "隐藏的一半 "在根系结构性状中起着决定性作用,影响着谷物产量和非生物胁迫耐受性。由于根系的复杂性和根圈的不可得性,根系性状的遗传研究受到阻碍。通过对根系结构的鉴定,可以基本了解植物的适应性、作物表现和谷物产量。随着人们对根系表型的兴趣与日俱增,育种人员通过开发基于田间、实验室和温室的先进表型平台,如土壤取芯、水培、GLO-roots、根瘤仪和迷你根瘤仪,克服了这些障碍。先进的二维、三维和四维根系成像技术,如磁共振技术、RGB 成像、红外热成像和 X 射线计算机断层扫描,虽然复杂,但却能为了解根系结构提供最理想、最准确的结果。本综述重点介绍利用最新先进技术进行根系表型的根系结构研究方法。
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引用次数: 0
Phenology and water relations of treeline species of Western Himalaya, India 印度西喜马拉雅山脉树线物种的物候和水分关系
IF 1.6 4区 生物学 Pub Date : 2024-03-02 DOI: 10.1007/s40415-024-00989-x
Nandan Singh, Ashish Tewari, Shruti Shah, Amit Mittal

Many regions of Himalayas are warming more than global average rate, and treeline is assumed to be sensitive to changes in the climate. The Indian Himalayan treeline species are very less studied on water stress level and its relation to phenology. In the present study, we have tried to relate water relations of selected treeline species with the timing of phenological phases in treeline areas of western Himalayan region of Uttarakhand. The soil moisture content (Sm) varied between 33.21 and 59.16%. Most phenological phases occurred between pre-summer and summer season in all studied treeline species. The water potential (Ψ) of all the studied tree species increased just before the commencement of leafing and flowering phases when the temperature rose. The species never encountered severe water stress and the pre-dawn water potential (ΨPD) remained above − 1.04 MPa across all the phenological phases. ΨPD was most negative − 1.04 MPa during flowering period and least negative − 0.14 MPa during fruit maturation period. Morning leaf conductance (gwAM) remained above 304.59 m mol m2 s−1 across all the seasons for all the studied species. Rhododendron’s species had the maximum phenological phases during summer season. The highest gwAM was measured in Betula utilis during rainy season and minimum in R. campanulatum during winter season. Leafing and flowering both showed a positive correlation with temperature while fruiting showed a positive correlation with rainfall. The study reveals that the water potential does not reach lethal level to curtail phenological and physiological activities in treeline species. The timing of phenophases in these species is highly sensitive to seasonal rainfall and soil water availability, with temperature also directly influencing the controlling/shifting of the phenophases.

喜马拉雅山脉许多地区的变暖速度超过了全球平均水平,因此树线被认为对气候变化非常敏感。对印度喜马拉雅山脉树线物种的水分胁迫水平及其与物候学关系的研究非常少。在本研究中,我们试图将选定的树线物种的水分关系与北阿坎德邦喜马拉雅西部树线地区的物候期时间联系起来。土壤含水量(Sm)介于 33.21% 和 59.16% 之间。在所有研究的树线物种中,大部分物候期发生在夏季前和夏季之间。当温度升高时,所有研究树种的水势(Ψ)都会在落叶期和开花期开始前上升。这些树种从未遇到严重的水分胁迫,黎明前的水势(ΨPD)在所有物候期都保持在-1.04兆帕以上。开花期的ΨPD负值最大-1.04 兆帕,果实成熟期的负值最小-0.14 兆帕。所有研究物种的晨叶电导率(gwAM)在所有季节都保持在 304.59 m mol m2 s-1 以上。杜鹃花物种的最大物候期在夏季。Betula utilis 在雨季测得的 gwAM 最高,而 R. campanulatum 在冬季测得的 gwAM 最低。叶期和花期都与温度呈正相关,而果期则与降雨量呈正相关。研究结果表明,水势达不到致命水平时,树线物种的物候和生理活动不会受到抑制。这些物种的物候期时间对季节性降雨和土壤水分供应高度敏感,温度也直接影响物候期的控制/转移。
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Brazilian Journal of Botany
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