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Revealing the role of natural killer cells in ankylosing spondylitis: identifying diagnostic biomarkers and therapeutic targets.
Pub Date : 2025-12-01 Epub Date: 2025-01-24 DOI: 10.1080/07853890.2025.2457523
Yuling Chen, Yan Li, Yuan Xu, Qing Lv, Yuanchun Ye, Jieruo Gu

Background: Ankylosing spondylitis (AS) is a chronic autoimmune disease that primarily affects the axial joints. Immune cells play a key role in the pathogenesis of AS. This study integrated bioinformatics methods with experimental validation to explore the role of natural killer (NK) cells in AS.

Methods: Two microarray datasets, GSE25101 and GSE73754, were selected, and the scRNA-seq data were obtained from GSE194315 and Liu's research. Differentially expressed genes (DEGs) and functional enrichment analysis were performed respectively. Weighted gene co-expression network analysis (WGCNA) was conducted to identify key modules of co-expressed genes and genes involved in NK cell function. The diagnostic value of the identified key genes was evaluated using ROC curves, logistic regression analysis, and a nomogram. Real-time PCR (RT-PCR) was used to quantified the expression of genes. Statistical analysis was conducted using the R software package, and a p-value of less than 0.05 was considered statistically significant.

Results: Pathways enrichment analysis revealed the involvement of NK cell-mediated immune pathways and regulation of the innate immune response, indicating the crucial role of innate immunity, especially NK cells, in AS pathogenesis. The construction of a co-expression network revealed that the MElightyellow module was most relevant to the NK cell-mediated immune pathway. IL2RB, CD247, PLEKHF1, EOMES, S1PR5, FGFBP2 from the MElightyellow module were identified as key genes involved in NK cell-mediated immune response and served as potential diagnostic biomarkers for AS, with moderate to high diagnostic values based on AUC values. Further analysis using scRNA-seq profiling revealed the higher expression level of IL2RB, CD247, PLEKHF1, S1PR5, FGFBP2 in NK cells compared to that in other cell types. CD247, PLEKHF1, EOMES, S1PR5, and FGFBP2 were reduced expressed in AS patients as compare to control group verified by scRNA-seq data, CD247, EOMES, FGFBP2, IL2RB and S1PR5 were reduced expressed verified by RT-PCR, and PLEKHF1, S1PR5, and FGFBP2 was upregulated after TNF-α blocker therapy.

Conclusion: The study revealed the potential role of NK cells and identified IL2RB, CD247, PLEKHF1, EOMES, S1PR5, and FGFBP2 as key genes associated with NK cells in the pathogenesis of AS.

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引用次数: 0
Identification of genetic variants of the IL18R1 gene in association with COPD susceptibility.
Pub Date : 2025-12-01 Epub Date: 2025-01-23 DOI: 10.1080/07853890.2024.2446690
Jiaoyuan Xu, Meilan Xian, Linhui Huang, Yamei Zheng, Lei Zhang, Jie Zhao, Jie Chen, Siguang Li, Lingsang Lin, Yi Zhong, Zehua Yang, Haihong Wu, Tian Xie, Yipeng Ding

Background: Although existing studies have identified some genetic loci associated with chronic obstructive pulmonary disease (COPD) susceptibility, many variants remain to be discovered. The aim of this study was to further explore the potential relationship between IL18R1 single nucleotide polymorphisms (SNPs) and COPD risk.

Methods: Nine hundred and ninety-six subjects were recruited (498 COPD cases and 498 healthy controls). Five candidate SNPs of IL18R1 were selected and genotyped using MassARRAY iPLEX platform. Logistic regression analysis was performed to assess the association of these SNPs with COPD risk. Multifactor dimensionality reduction (MDR) software was applied to calculate the interaction of SNP-SNP on COPD risk.

Results: IL18R1 rs9807989 (OR = 0.42, p < .001), rs3771166 (OR = 0.40, p < .001) and rs6543124 (OR = 0.44, p < .001) were associated with the reduced COPD risk, while rs2287037 (OR = 2.71, p < .001) and rs2058622 (OR = 2.06, p < .001) might be the risk-increasing factor for COPD occurrence in both the overall analysis and subgroup analysis (age, gender, drinking, and smoking). The best multi-locus model was the combination of rs2058622 and rs3771166.

Conclusion: Our study provided a reference and basis for investigating the association of IL18R1 polymorphisms with COPD risk.

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引用次数: 0
Identification of early prognostic biomarkers in Severe Fever with Thrombocytopenia Syndrome using machine learning algorithms. 使用机器学习算法识别发热伴血小板减少综合征的早期预后生物标志物。
Pub Date : 2025-12-01 Epub Date: 2025-01-13 DOI: 10.1080/07853890.2025.2451184
Jie Zhu, Jianmei Zhou, Chunhui Tao, Guomei Xia, Bingyan Liu, Xiaowei Zheng, Xu Li, Zhenhua Zhang

Objective: We aimed at identifying acute phase biomarkers in Severe Fever with Thrombocytopenia Syndrome (SFTS), and to establish a model to predict mortality outcomes.

Methods: A retrospective analysis was conducted on multicenter clinical data. Group-based trajectory modeling (GBTM) was utilized to demonstrate the overall trend of laboratory indicators and their correlation with mortality. Six different machine learning algorithms were employed to develop prognostic models based on the clinical features during the acute phase, which were reduced using Lasso regression.

Results: Seven indicators (ALT, AST, BUN, LDH, a-HBDH, DD, and PLT) at 7-10 days post-onset and their change slopes were found to be crucial during disease progression. These, along with other clinical features, were reduced to 8 variables using Lasso regression for model construction. The random forest model demonstrated the best performance in both internal validation (AUC: 0.961) and external validation (AUC: 0.948). Decision Curve Analysis indicated a good balance between model benefits and risks.

Conclusions: a-HBDH and its change slope along with central nervous symptom manifestations within 7-10 days after onset accurately predicted mortality in SFTS. Various algorithms provided a comprehensive overview of disease progression and constructed more stable and efficient models.

目的我们旨在确定严重发热伴血小板减少综合征(SFTS)急性期生物标志物,并建立一个预测死亡率结果的模型:方法: 我们对多中心临床数据进行了回顾性分析。方法:对多中心临床数据进行回顾性分析,利用基于组的轨迹建模(GBTM)来展示实验室指标的总体趋势及其与死亡率的相关性。根据急性期的临床特征,采用六种不同的机器学习算法建立预后模型,并用Lasso回归法对其进行还原:结果发现,发病后 7-10 天的七项指标(ALT、AST、BUN、LDH、a-HBDH、DD 和 PLT)及其变化斜率在疾病进展过程中至关重要。利用 Lasso 回归法构建模型时,将这些变量和其他临床特征缩减为 8 个变量。随机森林模型在内部验证(AUC:0.961)和外部验证(AUC:0.948)中表现最佳。结论:a-HBDH及其变化斜率以及发病后7-10天内的中枢神经症状表现可准确预测SFTS患者的死亡率。各种算法可提供疾病进展的全面概况,并构建出更稳定、更高效的模型。
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引用次数: 0
Optimal doses of intranasal esketamine plus dexmedetomidine for sedating toddlers during transthoracic echocardiography: a prospective, double-blind, randomized trial. 经胸超声心动图期间鼻内艾氯胺酮加右美托咪定用于镇静幼儿的最佳剂量:一项前瞻性、双盲、随机试验。
Pub Date : 2025-12-01 Epub Date: 2025-01-17 DOI: 10.1080/07853890.2025.2453087
Dongjie Pei, Ting Xiao, Li Zeng, Siwei Wei, Lei Wang, Zhen Du, Shuangquan Qu

Introduction: Esketamine has unique advantages in combination with dexmedetomidine for sedation in young children, owing to its sympathetic activity and mild respiratory depression. However, the optimal dose is yet to be determined. In this study, we compared the different doses of intranasal esketamine combined with dexmedetomidine for sedation during transthoracic echocardiography in toddlers.

Patients and methods: A total of 121 eligible children aged 13 years, who were scheduled for transthoracic echocardiography were randomized into three groups. They were treated with intranasal dexmedetomidine 1 mcg.kg-1 + esketamine 0.5 mg.kg-1 (group S1), dexmedetomidine 1 mcg.kg-1 + esketamine 1 mg.kg-1 (group S2), or dexmedetomidine 1 mcg.kg-1 + esketamine 1.5 mg.kg-1 (group S3). The primary outcome was the success rate of sedation, other outcomes included HR, SpO2, onset time, wake-up time, and adverse effects.

Results: The success rate of sedation was significantly higher in groups S2 (85.4%) and S3 (87.5%) than ingroup S1 (60%) (p = 0.004). The baseline HR and SpO2 did not differ between the groups at the corresponding time points following drug administration. The onset time and duration of sedation in group S1 were significantly longer than those in groups S2 and S3 (p = 0.000). However, there were no differences in the wake-up time or adverse effects among the three groups.

Conclusions: Intranasal administration of 1 mg.kg-1 esketamine combined with 1 mcg.kg-1 dexmedetomidine provided satisfactory sedation in young children undergoing transthoracic echocardiography. This sedative approach offers a rapid onset of awakening with few side effects.

Clinical trial registration number: ChiCTR2200060976, 2022/06/14 (trail from August 2022 to January 2023).

艾氯胺酮与右美托咪定联合用于幼儿镇静具有独特的优势,因为它具有交感神经活性和轻微的呼吸抑制作用。然而,最佳剂量尚未确定。在这项研究中,我们比较了不同剂量的艾氯胺酮联合右美托咪定在经胸超声心动图中对幼儿的镇静作用。患者和方法:将121名13岁的符合条件的经胸超声心动图患儿随机分为三组。患者接受1 mcg右美托咪定鼻内治疗。Kg-1 +艾氯胺酮0.5 mg。kg-1 (S1组),右美托咪定1mcg。Kg-1 +艾氯胺酮1mg。kg-1 (S2组),或右美托咪定1mcg。Kg-1 +艾氯胺酮1.5 mg。kg-1 (S3组)。主要观察指标为镇静成功率,其他观察指标包括HR、SpO2、发病时间、苏醒时间和不良反应。结果:S2组(85.4%)和S3组(87.5%)镇静成功率明显高于S1组(60%)(p = 0.004)。在给药后相应时间点,两组之间的基线HR和SpO2无差异。S1组的镇静起效时间和持续时间明显长于S2和S3组(p = 0.000)。然而,在唤醒时间和不良反应方面,三组之间没有差异。结论:鼻内给药1 mg。Kg-1艾氯胺酮联合1微克。Kg-1右美托咪定在接受经胸超声心动图检查的幼儿中提供了满意的镇静效果。这种镇静方法提供了快速觉醒,几乎没有副作用。临床试验注册号:ChiCTR2200060976, 2022/06/14(试验时间为2022年8月至2023年1月)。
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引用次数: 0
Characteristics, outcomes and the necessity of continued guideline-directed medical therapy in patients with heart failure with improved ejection fraction. 射血分数改善的心力衰竭患者的特点、结局和继续指导药物治疗的必要性
Pub Date : 2025-12-01 Epub Date: 2024-12-17 DOI: 10.1080/07853890.2024.2442535
Qin-Fen Chen, Yindan Lu, Christos S Katsouras, Yangdi Peng, Junfang Sun, Mingming Li, Chenyang Liu, Hongxia Yao, Liyou Lian, Xiaofang Feng, Wei-Hong Lin, Xiao-Dong Zhou

Background: Much remains to be learned about patients with heart failure with improved ejection fraction (HFimpEF).

Objective: This study sheds light on the characteristics and clinical outcomes of HFimpEF patients, including the consequences of halting guideline-directed medical therapy (GDMT).

Methods: This retrospective study was conducted on patients diagnosed with heart failure with reduced ejection fraction (HFrEF) who underwent a second echocardiogram at least 6 months apart between January 2009 and February 2023. The primary outcomes were major adverse cardiovascular events (MACEs), including all-cause mortality and heart failure hospitalization. The second outcome was recurrent HFrEF.

Results: Of 4,560 HFrEF patients were included, 3,289 (72.1%) achieved HFimpEF within a median follow-up period of 3.4 years (IQR: 1.8 - 5.9 years). Among these HFimpEF patients, recurrent HFrEF was observed in 941 (28.6%) patients during a median follow-up period of 2.3 years (IQR: 0.8-4.6 years). The proportion of patients who halted GDMT was 70.4%, 53.2%, 59.8% and 63.8% for MRA, beta-blockers, ACEI/ARB/ARNI and SGLT-2 inhibitors. Multivariable Cox analysis revealed ischemic heart disease, chronic kidney disease, coronary heart disease, lower left ventricular ejection fraction, larger left ventricular diastolic dimension and non-use GDMT are associated with recurrent HFrEF. Individuals without GDMT use exhibited lower chances of persistently recovering ejection fraction and high risks of MACEs compared to those who continue use.

Conclusions: HFimpEF is a common condition across all clinical follow-ups. Prevalent discontinuation of GDMT medications may contribute significantly to recurrent HFrEF, placing patients at a higher risk for poor prognosis.

背景:对于有改善射血分数(HFimpEF)的心力衰竭患者,还有很多需要了解的。目的:本研究揭示HFimpEF患者的特点和临床结局,包括停止指南指导药物治疗(GDMT)的后果。方法:本回顾性研究对诊断为心力衰竭并射血分数降低(HFrEF)的患者进行了回顾性研究,这些患者在2009年1月至2023年2月之间至少间隔6个月进行了第二次超声心动图检查。主要结局是主要不良心血管事件(mace),包括全因死亡率和心力衰竭住院。第二个结果是复发性HFrEF。结果:纳入的4560例HFrEF患者中,3289例(72.1%)在3.4年(IQR: 1.8 - 5.9年)的中位随访期内实现了HFimpEF。在这些HFrEF患者中,941例(28.6%)患者在中位随访时间为2.3年(IQR: 0.8-4.6年)期间出现复发性HFrEF。MRA、β受体阻滞剂、ACEI/ARB/ARNI和SGLT-2抑制剂停药的患者比例分别为70.4%、53.2%、59.8%和63.8%。多变量Cox分析显示,缺血性心脏病、慢性肾病、冠心病、低左室射血分数、大左室舒张度和未使用GDMT与HFrEF复发相关。与继续使用GDMT的个体相比,未使用GDMT的个体表现出持续恢复射血分数的机会较低,而mace的风险较高。结论:HFimpEF是所有临床随访中的常见疾病。GDMT药物的普遍停药可能会导致HFrEF的复发,使患者面临更高的预后不良风险。
{"title":"Characteristics, outcomes and the necessity of continued guideline-directed medical therapy in patients with heart failure with improved ejection fraction.","authors":"Qin-Fen Chen, Yindan Lu, Christos S Katsouras, Yangdi Peng, Junfang Sun, Mingming Li, Chenyang Liu, Hongxia Yao, Liyou Lian, Xiaofang Feng, Wei-Hong Lin, Xiao-Dong Zhou","doi":"10.1080/07853890.2024.2442535","DOIUrl":"10.1080/07853890.2024.2442535","url":null,"abstract":"<p><strong>Background: </strong>Much remains to be learned about patients with heart failure with improved ejection fraction (HFimpEF).</p><p><strong>Objective: </strong>This study sheds light on the characteristics and clinical outcomes of HFimpEF patients, including the consequences of halting guideline-directed medical therapy (GDMT).</p><p><strong>Methods: </strong>This retrospective study was conducted on patients diagnosed with heart failure with reduced ejection fraction (HFrEF) who underwent a second echocardiogram at least 6 months apart between January 2009 and February 2023. The primary outcomes were major adverse cardiovascular events (MACEs), including all-cause mortality and heart failure hospitalization. The second outcome was recurrent HFrEF.</p><p><strong>Results: </strong>Of 4,560 HFrEF patients were included, 3,289 (72.1%) achieved HFimpEF within a median follow-up period of 3.4 years (IQR: 1.8 - 5.9 years). Among these HFimpEF patients, recurrent HFrEF was observed in 941 (28.6%) patients during a median follow-up period of 2.3 years (IQR: 0.8-4.6 years). The proportion of patients who halted GDMT was 70.4%, 53.2%, 59.8% and 63.8% for MRA, beta-blockers, ACEI/ARB/ARNI and SGLT-2 inhibitors. Multivariable Cox analysis revealed ischemic heart disease, chronic kidney disease, coronary heart disease, lower left ventricular ejection fraction, larger left ventricular diastolic dimension and non-use GDMT are associated with recurrent HFrEF. Individuals without GDMT use exhibited lower chances of persistently recovering ejection fraction and high risks of MACEs compared to those who continue use.</p><p><strong>Conclusions: </strong>HFimpEF is a common condition across all clinical follow-ups. Prevalent discontinuation of GDMT medications may contribute significantly to recurrent HFrEF, placing patients at a higher risk for poor prognosis.</p>","PeriodicalId":93874,"journal":{"name":"Annals of medicine","volume":"57 1","pages":"2442535"},"PeriodicalIF":0.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11654040/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142840564","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
L3-SMI as a predictor of overall survival in oesophageal cancer patients receiving PD-1 inhibitors combined with chemotherapy. L3-SMI作为接受PD-1抑制剂联合化疗的食管癌患者总生存期的预测因子
Pub Date : 2025-12-01 Epub Date: 2024-12-12 DOI: 10.1080/07853890.2024.2440114
Huiya Ying, Yuhao Chen, Yiwen Hong, Kanglei Ying, Shiyu Li, Yuxuan Zhang, Tianhao Mei, Xian Song, Yuanhang He, Chenrui Yao, Fujun Yu

Background: Programmed death ligand-1 (PD-1), as an immunotherapy target, has been increasingly used in tumour therapies. But as reactions and outcomes to PD-1 inhibitors combined with chemotherapy vary individually, it is primarily important to identify an ideal indicator for predicting the therapeutic effectiveness in individual patients. Oesophageal cancer (EC) patients often have difficulty eating due to tumour blockage of the oesophagus, leading to malnutrition and muscle loss. Sarcopenia is one of the influencing factors for poor prognosis in tumour patients, but its role in PD-1 inhibitors combined with chemotherapy of EC patients is not fully clarified. In this study, we aimed to explore the prognostic significance of Sarcopenia measured by CT in EC patients treated with PD-1 antibody combined with chemotherapy.

Methods: The third lumbar skeletal muscle mass index (L3-SMI) was obtained from 83 EC patients before and 3 months after administration of PD-1 inhibitors combined with chemotherapy using conventional CT scans.

Results: Baseline L3-SMI and 3-month L3-SMI values were found not suitable for predicting the overall survival (OS) of EC patients (p = 0.32 & p = 0.055). Longitudinal change in L3-SMI (ΔL3-SMI) during PD-1 inhibitors combined with chemotherapy was identified as a relevant marker of OS in univariable analysis (HR: 0.98, 95% CI: 0.96-1.00, p = 0.042) and multivariable analysis (HR: 0.96, 95% CI: 0.93-0.99, p = 0.02). L3-SMI-positive patients generally had better OS (p = 0.041).

Conclusion: Excessive muscle loss rather than muscle loss before and after administration of PD-1 inhibitors combined with chemotherapy is an important prognostic factor for therapeutic outcomes and OS in EC patients.

背景:程序性死亡配体-1 (PD-1)作为一种免疫治疗靶点,在肿瘤治疗中的应用越来越广泛。但是,由于PD-1抑制剂联合化疗的反应和结果各不相同,因此确定一个理想的指标来预测个体患者的治疗效果是非常重要的。食管癌(EC)患者往往有进食困难,由于肿瘤堵塞食道,导致营养不良和肌肉损失。肌少症是肿瘤患者预后不良的影响因素之一,但其在PD-1抑制剂联合化疗EC患者中的作用尚不完全清楚。在本研究中,我们旨在探讨CT测量肌少症在PD-1抗体联合化疗的EC患者中的预后意义。方法:对83例EC患者在给予PD-1抑制剂联合化疗前及化疗后3个月的第三腰椎骨骼肌质量指数(L3-SMI)进行常规CT扫描。结果:基线L3-SMI和3个月L3-SMI值不适合预测EC患者的总生存期(OS) (p = 0.32和p = 0.055)。在单变量分析(HR: 0.98, 95% CI: 0.96-1.00, p = 0.042)和多变量分析(HR: 0.96, 95% CI: 0.93-0.99, p = 0.02)中,PD-1抑制剂联合化疗期间L3-SMI (ΔL3-SMI)的纵向变化被确定为OS的相关标志物。l3 - smi阳性患者总体OS较好(p = 0.041)。结论:PD-1抑制剂联合化疗前后过度肌肉损失而非肌肉损失是影响EC患者治疗结果和OS的重要预后因素。
{"title":"L3-SMI as a predictor of overall survival in oesophageal cancer patients receiving PD-1 inhibitors combined with chemotherapy.","authors":"Huiya Ying, Yuhao Chen, Yiwen Hong, Kanglei Ying, Shiyu Li, Yuxuan Zhang, Tianhao Mei, Xian Song, Yuanhang He, Chenrui Yao, Fujun Yu","doi":"10.1080/07853890.2024.2440114","DOIUrl":"10.1080/07853890.2024.2440114","url":null,"abstract":"<p><strong>Background: </strong>Programmed death ligand-1 (PD-1), as an immunotherapy target, has been increasingly used in tumour therapies. But as reactions and outcomes to PD-1 inhibitors combined with chemotherapy vary individually, it is primarily important to identify an ideal indicator for predicting the therapeutic effectiveness in individual patients. Oesophageal cancer (EC) patients often have difficulty eating due to tumour blockage of the oesophagus, leading to malnutrition and muscle loss. Sarcopenia is one of the influencing factors for poor prognosis in tumour patients, but its role in PD-1 inhibitors combined with chemotherapy of EC patients is not fully clarified. In this study, we aimed to explore the prognostic significance of Sarcopenia measured by CT in EC patients treated with PD-1 antibody combined with chemotherapy.</p><p><strong>Methods: </strong>The third lumbar skeletal muscle mass index (L3-SMI) was obtained from 83 EC patients before and 3 months after administration of PD-1 inhibitors combined with chemotherapy using conventional CT scans.</p><p><strong>Results: </strong>Baseline L3-SMI and 3-month L3-SMI values were found not suitable for predicting the overall survival (OS) of EC patients (<i>p</i> = 0.32 & <i>p</i> = 0.055). Longitudinal change in L3-SMI (ΔL3-SMI) during PD-1 inhibitors combined with chemotherapy was identified as a relevant marker of OS in univariable analysis (HR: 0.98, 95% CI: 0.96-1.00, <i>p</i> = 0.042) and multivariable analysis (HR: 0.96, 95% CI: 0.93-0.99, <i>p</i> = 0.02). L3-SMI-positive patients generally had better OS (<i>p</i> = 0.041).</p><p><strong>Conclusion: </strong>Excessive muscle loss rather than muscle loss before and after administration of PD-1 inhibitors combined with chemotherapy is an important prognostic factor for therapeutic outcomes and OS in EC patients.</p>","PeriodicalId":93874,"journal":{"name":"Annals of medicine","volume":"57 1","pages":"2440114"},"PeriodicalIF":0.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11639058/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142815238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A diagnostic signatures for intervertebral disc degeneration using TNFAIP6 and COL6A2 based on single-cell RNA-seq and bulk RNA-seq analyses. 基于单细胞RNA-seq和整体RNA-seq分析,使用TNFAIP6和COL6A2诊断椎间盘退变的特征。
Pub Date : 2025-12-01 Epub Date: 2024-12-20 DOI: 10.1080/07853890.2024.2443568
Hong-Mei Song, Zuo-Wei Li, Qin Huang, Chun-Gen Wu, Ming-Hua Li, Jun-Kang Shen

Objectives: Intervertebral disc degeneration (IVDD) is a prevalent degenerative condition associated with a high incidence rate of low back pain and disability. This study aimed to identify potential biomarkers and signaling pathways associated with IVDD.

Methods: Biomarkers were discerned through bulk-RNA and single-cell RNA sequencing (scRNA-Seq) investigations of IVDD cases from the Gene Expression Omnibus (GEO) database. Following this, two central genes were identified. Furthermore, gene set enrichment analysis (GSEA) and receiver operating characteristic (ROC) curve analysis were conducted. The transcriptional factor (TF) derived from nucleus pulposus (NP) cells was examined through the DoRothEA R package. RT-qPCR and IHC techniques were employed to confirm the expression of the two hub genes and their associated genes in tissue samples.

Results: The proteins Tumor necrosis factor-inducible gene 6 protein (TNFAIP6) and collagen VI-α2 (COL6A2) were frequently analyzed using a combination of DEGs from datasets GSE70362, GSE124272, and scRNA-seq. Examination of gene expression across multiple datasets indicated significant differences in TNFAIP6 and COL6A2 levels in IVDD compared to control or normal groups (p < 0.05). These two central genes demonstrated strong diagnostic utility in the training cohort and reliable predictive value in the validation datasets. Our study verified the potential role of ZEB2 as a TF in regulating two key genes associated with IVDD. Furthermore, qPCR and IHC confirmed elevated expression levels of the hub genes and transcription factor.

Conclusion: We identified biomarkers, specifically TNFAIP6 and COL6A2, that have the potential to predict disease activity and aid in the diagnosis of IVDD.

目的:椎间盘退变(IVDD)是一种常见的退行性病变,与腰背痛和残疾的高发病率有关。本研究旨在确定与 IVDD 相关的潜在生物标志物和信号通路:方法:通过对基因表达总库(GEO)数据库中的IVDD病例进行大量RNA和单细胞RNA测序(scRNA-Seq)调查,找出生物标志物。随后,确定了两个中心基因。此外,还进行了基因组富集分析(GSEA)和接收者操作特征曲线(ROC)分析。通过 DoRothEA R 软件包检测了来自髓核(NP)细胞的转录因子(TF)。采用 RT-qPCR 和 IHC 技术确认了两个枢纽基因及其相关基因在组织样本中的表达:结果:利用数据集 GSE70362、GSE124272 和 scRNA-seq 中的 DEGs 组合分析了肿瘤坏死因子诱导基因 6 蛋白(TNFAIP6)和胶原蛋白 VI-α2(COL6A2)。跨多个数据集的基因表达研究表明,与对照组或正常组相比,IVDD 患者的 TNFAIP6 和 COL6A2 水平存在显著差异(p < 0.05)。这两个中心基因在训练队列中显示出很强的诊断效用,在验证数据集中显示出可靠的预测价值。我们的研究验证了 ZEB2 作为 TF 在调控与 IVDD 相关的两个关键基因中的潜在作用。此外,qPCR和IHC证实了枢纽基因和转录因子表达水平的升高:我们发现了生物标志物,特别是 TNFAIP6 和 COL6A2,它们有可能预测疾病活动并帮助诊断 IVDD。
{"title":"A diagnostic signatures for intervertebral disc degeneration using TNFAIP6 and COL6A2 based on single-cell RNA-seq and bulk RNA-seq analyses.","authors":"Hong-Mei Song, Zuo-Wei Li, Qin Huang, Chun-Gen Wu, Ming-Hua Li, Jun-Kang Shen","doi":"10.1080/07853890.2024.2443568","DOIUrl":"https://doi.org/10.1080/07853890.2024.2443568","url":null,"abstract":"<p><strong>Objectives: </strong>Intervertebral disc degeneration (IVDD) is a prevalent degenerative condition associated with a high incidence rate of low back pain and disability. This study aimed to identify potential biomarkers and signaling pathways associated with IVDD.</p><p><strong>Methods: </strong>Biomarkers were discerned through bulk-RNA and single-cell RNA sequencing (scRNA-Seq) investigations of IVDD cases from the Gene Expression Omnibus (GEO) database. Following this, two central genes were identified. Furthermore, gene set enrichment analysis (GSEA) and receiver operating characteristic (ROC) curve analysis were conducted. The transcriptional factor (TF) derived from nucleus pulposus (NP) cells was examined through the DoRothEA R package. RT-qPCR and IHC techniques were employed to confirm the expression of the two hub genes and their associated genes in tissue samples.</p><p><strong>Results: </strong>The proteins Tumor necrosis factor-inducible gene 6 protein (TNFAIP6) and collagen VI-α2 (COL6A2) were frequently analyzed using a combination of DEGs from datasets GSE70362, GSE124272, and scRNA-seq. Examination of gene expression across multiple datasets indicated significant differences in TNFAIP6 and COL6A2 levels in IVDD compared to control or normal groups (<i>p</i> < 0.05). These two central genes demonstrated strong diagnostic utility in the training cohort and reliable predictive value in the validation datasets. Our study verified the potential role of ZEB2 as a TF in regulating two key genes associated with IVDD. Furthermore, qPCR and IHC confirmed elevated expression levels of the hub genes and transcription factor.</p><p><strong>Conclusion: </strong>We identified biomarkers, specifically TNFAIP6 and COL6A2, that have the potential to predict disease activity and aid in the diagnosis of IVDD.</p>","PeriodicalId":93874,"journal":{"name":"Annals of medicine","volume":"57 1","pages":"2443568"},"PeriodicalIF":0.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142866592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessing the impact of clerkships on the growth of clinical knowledge. 评估实习生对临床知识增长的影响。
Pub Date : 2025-12-01 Epub Date: 2024-12-28 DOI: 10.1080/07853890.2024.2443812
Chi Chang, Heather S Laird-Fick, John D Mitchell, Carol Parker, David Solomon

Purpose: This study quantified the impact of clinical clerkships on medical students' disciplinary knowledge using the Comprehensive Clinical Science Examination (CCSE) as a formative assessment tool.

Methods: This study involved 155 third-year medical students in the College of Human Medicine at Michigan State University who matriculated in 2016. Disciplinary scores on their individual Comprehensive Clinical Science Examination reports were extracted by digitizing the bar charts using image processing techniques. Segmented regression analysis was used to quantify the differences in disciplinary knowledge before, during, and after clerkships in five disciplines: surgery, internal medicine, psychiatry, pediatrics, and obstetrics and gynecology (ob/gyn).

Results: A comparison of the regression intercepts before and during their clerkships revealed that, on average, the participants improved the most in ob/gyn (β=11.193, p<.0001), followed by psychiatry (β=10.005, p<.001), pediatrics (β=6.238, p<.0001), internal medicine (β=1.638, p=.30), and improved the least in surgery (β=-2.332, p=.10). The regression intercepts of knowledge during their clerkships and after them, on the other hand, suggested that students' average scores improved the most in psychiatry (β=7.649, p=.008), followed by ob/gyn (β=4.175, p=.06), surgery (β=4.106, p=.007), and pediatrics (β=1.732, p=.32).

Conclusions: These findings highlight how clerkships influence the acquisition of disciplinary knowledge, offering valuable insights for curriculum design and assessment. This approach can be adapted to evaluate the effectiveness of other curricular activities, such as tutoring or intersessions. The results have significant implications for educators revising clerkship content and for students preparing for the United States Medical Licensing Examination Step 2.

目的:本研究以临床综合科学考试(CCSE)作为形成性评估工具,量化临床见习对医学生学科知识的影响。方法:本研究涉及密歇根州立大学人类医学学院2016年入学的155名三年级医学生。通过使用图像处理技术对柱状图进行数字化处理,提取其个人综合临床科学检查报告的学科分数。采用分段回归分析,量化外科学、内科学、精神病学、儿科学、妇产科5个学科实习前、实习中、实习后的学科知识差异。结果:在他们实习前和实习期间的回归截断比较显示,平均而言,参与者在妇产科改善最多(β=11.193, p= 0001),其次是精神病学(β=10.005, p.0001),儿科(β=6.238, p= 0.30),内科(β=1.638, p= 0.30),外科改善最少(β=-2.332, p= 0.10)。实习期间和实习结束后的知识回归截断显示,学生在精神科的平均成绩提高最多(β=7.649, p= 0.008),其次是妇产科(β=4.175, p= 0.06)、外科(β=4.106, p= 0.07)和儿科(β=1.732, p= 0.32)。结论:这些发现强调了职员如何影响学科知识的获取,为课程设计和评估提供了有价值的见解。这种方法可以用于评估其他课程活动的有效性,如辅导或课间休息。研究结果对教育工作者修改实习内容和学生准备美国医疗执照考试第2步具有重要意义。
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引用次数: 0
RARB genetic variants might contribute to the risk of chronic obstructive pulmonary disease based on a case-control study. 基于一项病例对照研究,RARB基因变异可能增加慢性阻塞性肺疾病的风险。
Pub Date : 2025-12-01 Epub Date: 2024-12-26 DOI: 10.1080/07853890.2024.2445195
Linhui Huang, Wenya Xu, Yihui Fu, Zehua Yang, Rubing Mo, Yipeng Ding, Tian Xie

Background: Chronic obstructive pulmonary disease (COPD) is a progressive respiratory disease that severely impairs patients' respiratory function and quality of life. RARB is involved in COPD progression by affecting inflammatory reactions, cell proliferation, and apoptosis. The impact of single nucleotide polymorphisms (SNPs) within RARB on COPD susceptibility remains unclear. Here, we aimed to evaluate the association between RARB SNPs and COPD risk.

Methods: A total of 270 COPD patients and 271 healthy controls were enrolled. The MassARRAY iPLEX platform tested the genotype of the SNPs. The association was analyzed using logistic regression analysis. The false-positive report probability (FPRP) analysis was performed to validate the significant findings. The relationship between SNPs and RARB expression was evaluated using the GTEx database.

Results: Our study found a significant association between rs6799734 and COPD susceptibility (OR 1.88, p = 0.008, p (FDR) = 0.047). The stratified analysis revealed that this association was particularly pronounced among individuals aged ≤ 71 years (OR 2.34, p = 0.011, p (FDR) = 0.045), males (OR 2.60, p = 0.002, p (FDR) = 0.013), those with a BMI ≥ 24 (OR 3.95, p = 0.018, p (FDR) = 0.108), and smokers (OR 2.48, p = 0.020, p (FDR) = 0.120). Additionally, rs1286641 and rs1881706 showed significant associations with COPD risk in females and smokers. These associations were further validated by FPRP analysis. Preliminary mechanism studies indicated that rs1286641 and rs1881706 were related to RARB expression.

Conclusion: Our findings suggest a potential role of RARB SNPs in influencing COPD risk.

背景:慢性阻塞性肺疾病(COPD)是一种严重损害患者呼吸功能和生活质量的进行性呼吸系统疾病。RARB通过影响炎症反应、细胞增殖和凋亡参与COPD的进展。RARB中单核苷酸多态性(snp)对COPD易感性的影响尚不清楚。在这里,我们旨在评估RARB snp与COPD风险之间的关系。方法:共纳入270例COPD患者和271例健康对照。MassARRAY iPLEX平台检测snp的基因型。采用logistic回归分析对相关性进行分析。假阳性报告概率(FPRP)分析验证了显著的发现。使用GTEx数据库评估snp与RARB表达之间的关系。结果:我们的研究发现rs6799734与COPD易感性之间存在显著相关性(OR 1.88, p = 0.008, p (FDR) = 0.047)。分层分析显示,这种关联在年龄≤71岁(OR 2.34, p = 0.011, p (FDR) = 0.045)、男性(OR 2.60, p = 0.002, p (FDR) = 0.013)、BMI≥24 (OR 3.95, p = 0.018, p (FDR) = 0.108)和吸烟者(OR 2.48, p = 0.020, p (FDR) = 0.120)中尤为明显。此外,rs1286641和rs1881706与女性和吸烟者COPD风险显著相关。FPRP分析进一步证实了这些关联。初步机制研究表明,rs1286641和rs1881706与RARB表达有关。结论:我们的研究结果提示RARB snp在影响COPD风险中的潜在作用。
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引用次数: 0
Existence and significance of anti-HLA-C autoantibodies to primary and persistent platelet transfusion refractoriness in patients with hematologic disorders: a retrospective study from a single centre. 血液病患者原发性和持续性血小板输注难治性抗hla - c自身抗体的存在及其意义:一项来自单一中心的回顾性研究
Pub Date : 2025-12-01 Epub Date: 2024-12-28 DOI: 10.1080/07853890.2024.2446689
Xunhua Li, Qi Liu, Jingjie Dong, Yaonan Hong, Chuanao Xin, Junfeng Guo, Shan Liu, Peicheng Wang, Zexing Sun, Yingying Shen, Xiawan Yang, Hangchao Li, Yiping Shen, Jianping Shen, Baodong Ye, Yuhong Zhou, Tonglin Hu, Dijiong Wu

Objectives: Platelet transfusion refractoriness (PTR) is a frustrating clinical problem, and primary and persistent (P/P) PTR who experienced persistent PTR since the first transfusion was failed to be well recognized. This study aims to investigate the incidence and risk factors for P/P PTR.

Methods: Patients with hematologic disorders who underwent HLA high-resolution genotyping and donor-specific HLA antibody or panel reactive antibody (PRA) testing between January 2019 and March 2023 were reviewed. Clinical data including infection history, splenomegaly, frequency and quantity of blood transfusions, and transfusions response were delineated and subsequently analyzed.

Results: 114 patients were included retrospectively, and 1071 transfusions were recorded. The overall incidence of PTR was 28.95% (33/114), with 63.63% (21/33) being P/P PTR. Anti class I HLA (anti-HLA-I) antibody was identified as an independent risk factor for ineffective platelet transfusion through multivariate logistic regression analysis (p = .034). Interestingly, anti-HLA-C autoantibodies were first found in six patients, and both anti-HLA-A and C autoantibodies were detected in one case, comprising a total of 10.71% (6/56) of HLA-I antibody-positive patients. Further analysis revealed that anti-HLA-C autoantibody was identified as an independent risk factor for P/P PTR (p = .039). Among patients with positive anti-HLA-C antibodies, significant differences in the effectiveness of ABO, D-matched and cross-matching transfusions were observed between patients with or without anti-HLA-C autoantibodies (p < .001 and p = .017). Notably, platelet transfusions independence was achieved by two of the four patients who received rituximab.

Conclusions: This work emphasized the significance of anti-HLA-C autoantibody for P/P PTR in hematological patients, and rituximab may therapeutic.

目的:血小板输注难治性(PTR)是一个令人沮丧的临床问题,原发性和持续性(P/P) PTR未能很好地认识到自第一次输注以来发生持续PTR的患者。本研究旨在探讨P/P PTR的发生率及危险因素。方法:回顾2019年1月至2023年3月期间接受HLA高分辨率基因分型和供者特异性HLA抗体或群体反应性抗体(PRA)检测的血液病患者。描述临床资料,包括感染史、脾肿大、输血次数和数量以及输血反应。结果:回顾性分析114例患者,记录1071例输血。PTR总发生率为28.95%(33/114),其中P/P PTR发生率为63.63%(21/33)。多因素logistic回归分析发现抗I类HLA抗体是血小板输注无效的独立危险因素(p = 0.034)。有趣的是,6例患者首次发现抗hla -C自身抗体,1例患者同时检测到抗hla - a和C自身抗体,占HLA-I抗体阳性患者的10.71%(6/56)。进一步分析发现,抗hla - c自身抗体是P/P PTR的独立危险因素(P = 0.039)。在抗hla - c抗体阳性的患者中,有或没有抗hla - c自身抗体的患者在ABO、d匹配和交叉匹配输注的有效性上存在显著差异(p p = 0.017)。值得注意的是,接受利妥昔单抗治疗的4名患者中有2名实现了血小板输注独立性。结论:本工作强调了抗hla - c自身抗体对血液病患者P/P PTR的意义,利妥昔单抗可治疗。
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引用次数: 0
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