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Phenotypic plasticity, heritability, and genotype-by-environment interactions in an insect dispersal polymorphism. 昆虫传播多态性中的表型可塑性、遗传力和基因型与环境的相互作用。
IF 2.6 Q2 ECOLOGY Pub Date : 2025-09-16 DOI: 10.1186/s12862-025-02447-y
Lilian Cabon, Mahendra Varma, Gabe Winter, Anne Ebeling, Holger Schielzeth

Background: Evolutionary fitness is determined by the match between an organism's phenotype and its local environment. When mismatched, individuals may disperse to more suitable habitats. For flightless insects, however, the range of dispersal is typically limited. Numerous flightless species have, therefore, evolved a dispersal dimorphism, that is, some individuals in otherwise short-winged populations develop long wings. Wing development may be genetically or environmentally determined, but these two drivers have rarely been analysed together.

Results: We studied the inheritance and density-dependent plasticity in the dispersal dimorphism of the meadow grasshopper Pseudochorthippus parallelus. Using a full-sib half-sib breeding design, we found that the development of long wings strongly depends on rearing density, with tactile stimulation being the most likely proximate cause. Additionally, we found heritable variation in the development of long wings, both in the propensity to produce long wings and in response to density (genotype-by-environment interactions). While at high and low densities, the environmental effect dominates, genetic variation is most consequential at intermediate densities.

Conclusions: Our results have implications for the phenotype-environment match and ultimately the evolution of individualised niches. Induced dimorphisms represent a form of adaptive phenotypic plasticity by offering a much greater potential for active niche choice and both genetic and induced dispersal dimorphisms facilitate niche choice in allowing individuals to sample a greater range of environments. Our study shows that niche-related polymorphisms can evolve via selection on the sensitivity threshold.

背景:进化适应度是由生物体的表型与其当地环境之间的匹配决定的。当不匹配时,个体可能分散到更合适的栖息地。然而,对于不会飞的昆虫来说,它们的传播范围通常是有限的。因此,许多不会飞的物种进化出了一种分散的二态性,也就是说,在其他短翼种群中的一些个体发育出了长翅膀。机翼的发育可能是由基因或环境决定的,但这两个驱动因素很少被一起分析。结果:研究了草甸蚱蜢(Pseudochorthippus parallelus)分布二型性的遗传和密度依赖的可塑性。利用全兄妹半兄妹的繁殖设计,我们发现长翅膀的发育强烈依赖于饲养密度,触觉刺激是最可能的直接原因。此外,我们还发现了长翅膀发育的遗传变异,包括长翅膀的倾向和对密度的反应(基因型与环境的相互作用)。虽然在高和低密度时,环境影响占主导地位,但在中等密度时,遗传变异是最重要的。结论:我们的研究结果对表型-环境匹配和最终个体化生态位的进化具有启示意义。诱导二态现象通过提供更大的主动生态位选择的潜力,代表了适应性表型可塑性的一种形式,遗传和诱导扩散二态现象都促进了生态位选择,使个体能够在更大范围的环境中取样。我们的研究表明,与生态位相关的多态性可以通过敏感性阈值的选择而进化。
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引用次数: 0
The associations between floral traits and pollinator groups in two Mediterranean mountainous plant communities in the Middle Atlas of Morocco. 摩洛哥中部阿特拉斯两个地中海山地植物群落的花性状与传粉者群体之间的关系。
IF 2.6 Q2 ECOLOGY Pub Date : 2025-09-09 DOI: 10.1186/s12862-025-02403-w
Aziz Ait Akka, Soufyane Lafraxo, Fatima Zahra Jawhari, Ahlam Sentil, Mohammed Bourhia, Youssouf Ali Younous, Abdel-Rhman Z Gaafar, Amina Bari, Raja Guemmouh
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引用次数: 0
Widefield acoustics heuristic: advancing microphone array design for accurate spatial tracking of echolocating bats. 宽场声学启发式:改进的麦克风阵列设计,用于回声定位蝙蝠的精确空间跟踪。
IF 2.6 Q2 ECOLOGY Pub Date : 2025-09-08 DOI: 10.1186/s12862-025-02441-4
Ravi Umadi

Accurate three-dimensional localisation of ultrasonic bat calls is essential for advancing behavioural and ecological research. I present a comprehensive, open-source simulation framework-Array WAH-for designing, evaluating, and optimising microphone arrays tailored to bioacoustic tracking. The tool incorporates biologically realistic signal generation, frequency-dependent propagation, and advanced Time Difference of Arrival (TDoA) localisation algorithms, enabling precise quantification of both positional and angular accuracy. The framework supports both frequency-modulated (FM) and constant-frequency (CF) call types, the latter characteristic of Hipposiderid and Rhinolophid bats, which are particularly prone to localisation errors due to their long-duration emissions. A key innovation is the integration of source motion modelling during call emission, which introduces Doppler-based time warping and phase shifts across microphones-an important and often overlooked source of error in source localisation. I systematically compare four array geometries-a planar square, a pyramid, a tetrahedron, and an octahedron-across a volumetric spatial grid. The tetrahedral and octahedral configurations demonstrate superior localisation robustness, while planar arrays exhibit limited angular resolution. My simulations reveal that spatial resolution is fundamentally constrained by array geometry and the signal structure, with typical localisation error ranging between 5-10 cm at 0.5 m arm lengths. By providing a flexible, extensible, and user-friendly simulation environment, Array WAH supports task-specific design and deployment of compact, field-deployable localisation systems. It is especially valuable for investigating the acoustic behaviour of free-flying bats under naturalistic conditions, and complements emerging low-power multichannel ultrasonic recorders for field deployment and method validation.

准确的三维定位超声波蝙蝠呼叫是必不可少的推进行为和生态研究。我提出了一个全面的,开源的模拟框架-阵列wah -用于设计,评估和优化为生物声学跟踪量身定制的麦克风阵列。该工具结合了生物逼真的信号生成、频率相关的传播和先进的到达时间差(TDoA)定位算法,能够精确量化位置和角度精度。该框架支持调频(FM)和恒频(CF)呼叫类型,后者是Hipposiderid和Rhinolophid蝙蝠的特征,由于其长时间的发射,它们特别容易出现定位错误。一个关键的创新是在呼叫发射期间整合源运动建模,它引入了基于多普勒的时间扭曲和跨麦克风的相移-这是源定位中一个重要但经常被忽视的误差源。我系统地比较了四种阵列几何形状——平面正方形、金字塔、四面体和八面体——在一个体积空间网格上。四面体和八面体结构表现出优越的定位鲁棒性,而平面阵列表现出有限的角分辨率。我的模拟表明,空间分辨率从根本上受到阵列几何形状和信号结构的限制,在0.5米臂长时,典型的定位误差在5-10厘米之间。通过提供灵活、可扩展和用户友好的仿真环境,Array WAH支持任务特定的设计和紧凑的现场部署定位系统的部署。它对于研究自然条件下自由飞行蝙蝠的声学行为特别有价值,并且补充了新兴的低功率多通道超声波记录仪,用于现场部署和方法验证。
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引用次数: 0
Pervasive non-random mitochondrial DNA heteroplasmy in the hybrid water frog Pelophylax esculentus. 杂交水蛙线粒体DNA普遍存在非随机异质性。
IF 2.6 Q2 ECOLOGY Pub Date : 2025-09-02 DOI: 10.1186/s12862-025-02436-1
Jelena Radojicic, Jon Bent Kristoffersen, Eirini-Slavka Polovina, Pavlos Pavlidis, Emmanuel D Ladoukakis

Background: Heteroplasmy, the presence of more than one type of mitochondrial DNA (mtDNA) within an individual, is an exception to the maternal transmission of mtDNA and has been observed in several animal species. A central question is whether heteroplasmy among individuals and across generations is mainly influenced by genetic drift or by selection.

Results: We quantified heteroplasmy in eight males, eight females and eight unfertilized eggs per female from a natural population of the hybrid frog species Pelophylax esculentus (between P. ridibundus and P. lessonae). After excluding sequencing error and potential sources of contamination, we found that all individuals and most of the eggs were heteroplasmic, containing 2-5 different haplotypes, from which one was very common and the rest appeared at very low frequencies (at maximum 2%). We observed a single lessonae haplotype, which was present in females and in their eggs but absent from all males. On the other hand, we observed four different ridibundus haplotypes that were present in males, females and eggs. Eggs had significantly lower heteroplasmy levels than their mothers.

Conclusions: The distribution of haplotypes between males and females, the difference of heteroplasmy levels between mothers and their eggs, and results from simulations suggest that drift alone is not sufficient to explain the observed patterns of heteroplasmy.

背景:异质性,即个体内存在一种以上类型的线粒体DNA (mtDNA),是mtDNA母系遗传的一个例外,在一些动物物种中已经观察到。一个核心问题是,个体间和代际间的异质性主要是受遗传漂变还是自然选择的影响。结果:我们量化了一个杂交蛙种Pelophylax esculentus(介于P. ridibundus和P. lessonae之间)自然种群的8个雄性、8个雌性和每个雌性8个未受精卵的异质性。在排除测序错误和潜在污染源后,我们发现所有个体和大部分卵都是异质的,含有2-5种不同的单倍型,其中一种很常见,其余的出现频率很低(最多2%)。我们观察到一个单一的单倍型,在雌性和它们的卵中存在,但在所有雄性中都没有。另一方面,我们观察到在雄性、雌性和卵中存在四种不同的ridibundus单倍型。卵子的异质性水平明显低于它们的母亲。结论:单倍型在雄性和雌性之间的分布,母亲和卵子之间异质性水平的差异,以及模拟结果表明,仅靠漂变不足以解释观察到的异质性模式。
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引用次数: 0
A harbor seal (Phoca vitulina) shows extensive respiratory control in sound production. 斑海豹(Phoca vitulina)在发声时表现出广泛的呼吸控制。
IF 2.6 Q2 ECOLOGY Pub Date : 2025-09-02 DOI: 10.1186/s12862-025-02404-9
Diandra Duengen, Yannick Jadoul, Andrea Ravignani
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引用次数: 0
Volunteers' diverse and unexpected knowledge practices in contributory citizen science. 志愿者在贡献型公民科学中的多样化和意想不到的知识实践。
IF 2.6 Q2 ECOLOGY Pub Date : 2025-09-01 DOI: 10.1186/s12862-025-02415-6
Debbie Gonzalez Canada, Stephanie Lavau, Kathryn J H Williams
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引用次数: 0
The role of Cacao agroforests in the genetic conservation of Cariniana legalis, an emblematic species of the atlantic forest. 可可混交林在大西洋森林的一个标志性物种——合法Cariniana legalis遗传保护中的作用。
IF 2.6 Q2 ECOLOGY Pub Date : 2025-09-01 DOI: 10.1186/s12862-025-02418-3
A S Santos, J B Leal, R X Corrêa, K P Gramacho, F A Gaiotto

Deforestation in the Atlantic Forest has reached critical levels, threatening multiple levels of biodiversity. In these deforested landscapes, conservation strategies could benefit from preserving agroforestry systems known as Cabruca, a traditional method of cultivating cocoa under a canopy of native trees. In this context, Cariniana legalis (Jequitibá-rosa), an endemic tree species of the Atlantic Forest listed as endangered, was selected to evaluate the role of cocoa agroforests (Cabrucas) and forest remnants in the genetic conservation of this species. The study assessed the genetic diversity, inbreeding levels, and genetic structure of five populations of C. legalis located in forest remnants protected by law and in Cabrucas in southern Bahia, Brazil. Using 11 microsatellite loci, 294 individuals were genotyped for adult and juvenile ontogenetic stages. Despite forest fragmentation, some populations, especially those located in Cabrucas, retained high levels of genetic diversity in both stages. In contrast, a protected area exhibited lower genetic diversity and elevated inbreeding levels (f > 0.43) in both adults and juveniles. Analyses of genetic differentiation (FST) and migration rate (Nm) indicated reduced historical gene flow in certain populations, while network analysis and Discriminant Analysis of Principal Components (DAPC) identified Cabrucas as central genetic hubs promoting connectivity across the landscape in both ontogenetic stages. Our results highlight the conservation value of cocoa agroforests for maintaining the genetic diversity and connectivity of this endangered tree species. We therefore recommend the inclusion of Cabrucas in integrated genetic conservation strategies for C. legalis in anthropogenically modified Atlantic Forest landscapes.

大西洋森林的森林砍伐已达到临界水平,威胁到多个层面的生物多样性。在这些森林被砍伐的地区,保护策略可以从保存被称为Cabruca的农林业系统中受益,这是一种在当地树木的树冠下种植可可的传统方法。在此背景下,选择大西洋森林的一种濒危特有树种——可可树(Cariniana legalis, Jequitibá-rosa)来评估可可农林业(Cabrucas)和森林遗迹在该物种遗传保护中的作用。本研究对巴西巴伊亚州南部受法律保护的森林遗址和Cabrucas地区的5个legalis居群的遗传多样性、近交水平和遗传结构进行了评估。利用11个微卫星位点,对294个个体进行了成虫和幼虫个体发生阶段的基因分型。尽管森林破碎化,一些种群,特别是位于Cabrucas的种群,在这两个阶段都保持了高度的遗传多样性。相比之下,保护区成虫和幼虫的遗传多样性较低,近交水平较高(fbb0.43)。遗传分化(FST)和迁移率(Nm)分析表明,某些种群的历史基因流动减少,而网络分析和主成分判别分析(DAPC)表明,在个体发生阶段,Cabrucas是促进景观连通性的中心遗传枢纽。我们的研究结果强调了可可农林复合林在维持这种濒危树种的遗传多样性和连通性方面的保护价值。因此,我们建议将Cabrucas纳入人工改造大西洋森林景观中legalis的综合遗传保护策略。
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引用次数: 0
Comparative genomics of two closely related Acropora coral species with different spawning seasons reveals genomic regions possibly associated with gametogenesis. 比较基因组学揭示了两种具有不同产卵季节的近缘Acropora珊瑚可能与配子体发生有关的基因组区域。
IF 2.6 Q2 ECOLOGY Pub Date : 2025-09-01 DOI: 10.1186/s12862-025-02432-5
Shiho Takahashi-Kariyazono, Akira Iguchi, Yohey Terai

Marine invertebrates release their gametes at an optimal time to produce the next generation. In reef-building scleractinian corals, synchronous spawning is essential for reproductive success. Molecular mechanisms of scleractinian gametogenesis have been studied; however, the mechanism by which coral gametes mature at specific times has yet to be discovered. The present study focused on two Acropora species with different spawning seasons. In Okinawa, Japan, Acropora digitifera spawns from May to June, whereas Acropora sp. 1 spawns in August. Comparative genomic analyses revealed that 60 genes are located in the diverged genomic regions between the two species, suggesting a possible association with timing of gametogenesis. Among candidate genes, we identified an Acropora sp. 1-specific amino acid change in gene WDR59, one of the components of a mTORC1 activator, GATOR2. Since regulation of gametogenesis by mTORC1 is widely conserved among eukaryotes, the difference in timing of gamete maturation observed in the two Acropora species may be caused by a substitution in WDR59 that slightly affects timing of mTORC1 activation via GATOR2. In addition, this substitution may lead to reproductive isolation between the two species, due to different spawning periods. Thus, we propose that A. digitifera and Acropora sp. 1 species pair is an effective model for studying coral speciation and understanding the molecular mechanisms that control coral spawning timing.

海洋无脊椎动物在最佳时间释放配子以产生下一代。在造礁的硬核珊瑚中,同步产卵对繁殖成功至关重要。对核裂菌配子发生的分子机制进行了研究;然而,珊瑚配子在特定时间成熟的机制尚未被发现。本研究以两种不同产卵季节的Acropora为研究对象。在日本冲绳,Acropora digitalfera在5月至6月产卵,而Acropora sp. 1在8月产卵。比较基因组分析显示,60个基因位于两个物种之间的不同基因组区域,这可能与配子体发生的时间有关。在候选基因中,我们在mTORC1激活因子GATOR2的组成部分之一WDR59基因中发现了一个Acropora sp. 1特异性氨基酸变化。由于mTORC1对配子发生的调控在真核生物中广泛保守,因此在两种Acropora物种中观察到的配子成熟时间的差异可能是由WDR59中的一个替换引起的,该替换会轻微影响通过GATOR2激活mTORC1的时间。此外,由于产卵期不同,这种替代可能导致两个物种之间的生殖隔离。因此,我们提出A. digitalfera和Acropora sp. 1物种对是研究珊瑚物种形成和了解珊瑚产卵时间控制分子机制的有效模型。
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引用次数: 0
Vulnerability analysis and sustainable rehabilitation strategies for mangrove ecosystems in Bedono coastal area, Central Java. 中爪哇贝多诺沿海地区红树林生态系统脆弱性分析与可持续恢复战略。
IF 2.6 Q2 ECOLOGY Pub Date : 2025-08-28 DOI: 10.1186/s12862-025-02406-7
Fuad Muhammad, Marsum Marsum, Sapto Purnomo Putro, Mochammad Hadi, Murningsih Murningsih, Jafron Wasiq Hidayat, Waqor Ahmad, Puteri Inandin Nabiha, Slamet Wardoyo

Mangrove ecosystems in Bedono Village, Demak Regency, Central Java, are seriously degraded due to aggressive coastal abrasion, extreme soil salinity (45‰-80‰), and failure of previous rehabilitation programmes. This study aims to assess the level of vulnerability of mangrove habitat and formulate an integrated rehabilitation strategy that includes ecological and institutional aspects. Data were collected through tidal analysis, measurement of sediment texture and soil salinity, identification of plankton and macrobenthos diversity, and analysis of mangrove species community structure. The Coastal Vulnerability Index (CVI) was calculated based on four biophysical parameters, namely tidal inundation duration, maximum inundation height, soil salinity, and substrate type. Spatial analysis was conducted using ArcGIS 10 software to map the zones with high vulnerability. In addition, the Analytical Network Process (ANP) approach was used to prioritise ecological and institutional problems and develop solutions based on stakeholder interviews and expert validation. The results showed that the mangrove ecosystem in Bedono is highly vulnerable, with tidal inundation for 29-31 days per month, an average inundation height of 0.97 m, and a dominance of loamy sand textured soil. Avicennia marina species dominated in all growth stages, while the diversity of other species was very low. Key problems identified include coastal abrasion, low planting success rates due to non-adaptive techniques, and weak coordination between stakeholders. Priority solutions include installation of sediment traps, implementation of adaptive planting techniques, community involvement in monitoring, and establishment of village regulations to support programme sustainability. This study provides a new framework for integrating CVI-based ecological vulnerability mapping and institutional analysis to support comprehensive mangrove rehabilitation planning in heavily impacted coastal areas.

中爪哇Demak Regency的Bedono村的红树林生态系统由于海岸侵蚀、极端土壤盐度(45‰-80‰)和先前恢复方案的失败而严重退化。本研究旨在评估红树林生境的脆弱程度,并制定包括生态和体制方面的综合恢复战略。通过潮汐分析、沉积物质地和土壤盐度测量、浮游生物和大型底栖动物多样性鉴定以及红树林物种群落结构分析收集数据。沿海脆弱性指数(CVI)基于潮汐淹没时间、最大淹没高度、土壤盐度和基质类型4个生物物理参数进行计算。利用ArcGIS 10软件进行空间分析,绘制高易损区地图。此外,分析网络过程(ANP)方法用于优先考虑生态和制度问题,并根据利益相关者访谈和专家验证制定解决方案。结果表明:贝多诺红树林生态系统处于高度脆弱状态,潮汐淹没时间为29 ~ 31天/月,平均淹没高度为0.97 m,以壤质砂质土为主;海棠在各生长阶段均占优势,其他物种多样性很低。确定的关键问题包括海岸磨损,由于非适应性技术导致的种植成功率低,以及利益相关者之间的协调不力。优先解决方案包括安装沉积物捕集器、实施适应性种植技术、社区参与监测以及建立村庄规章制度以支持项目的可持续性。本研究为整合基于cvi的生态脆弱性制图和制度分析提供了一个新的框架,以支持受严重影响的沿海地区红树林的综合恢复规划。
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引用次数: 0
Forecasting climate change effects on the potential distribution of Zhumeria Majdae as an endangered monotypic endemic species: a maxent modeling approach. 预测气候变化对一种濒危单型特有种——麻竹属潜在分布的影响:一种maxent建模方法。
IF 2.6 Q2 ECOLOGY Pub Date : 2025-08-26 DOI: 10.1186/s12862-025-02431-6
Naser Hosseini, Ahmadreza Mehrabian, Farzaneh Khajoei Nasab, Hossein Mostafavi, Mansour Ghorbanpour

Medicinal plants are invaluable sources of bioactive compounds and continue to serve as primary medicine for many people worldwide, despite advances in pharmaceuticals. Their recognition has increased with the popularity of herbal products, yet many are vanishing rapidly. Climate change further threatens these resources, making their conservation a pressing concern. This study aimed to evaluate current range and the potential impact of climate change on the future distribution of Zhumeria majdae, an endangered and endemic medicinal species in Iran, and to identify priority areas for its conservation. Using 56 occurrence records and 7 environmental variables, the MaxEnt model was employed to project current and future habitat suitability under two climate scenarios (RCP 4.5 and RCP 8.5) for the 2050s and 2070s. The model performed excellently (AUC = 0.977, TSS = 0.807 ). Among the variables used, solar radiation contributed the most (26%), followed by slope (12%), pH index (2.5%), Bio6 (1.1%), Bio19 (26.3%), Bio10 (0.7%), and Bio18 (31.3%). The results predicted suitable range in Hormozgan, South of Kerman and Fars provinces. Also, modeling projected a notable shift in the geographic distribution of Z. majdae under climate change scenarios. The suitable habitat is projected to expand by 20.12% under RCP 4.5 and by 29.95% under RCP 8.5 in the 2050s. In the 2070s, an increase of 21.63% is expected under RCP 4.5, while a slight contraction of 1.15% is projected under RCP 8.5. Based on these findings, it is recommended to prioritize conservation efforts in areas projected to remain suitable in both current and future climates. Establishing in-situe and ex-situ conservation sites, introduce protected areas in new habitat projected, and initiating habitat restoration in emerging suitable zones could enhance the species' long-term survival prospects.

药用植物是生物活性化合物的宝贵来源,尽管制药取得了进步,但它们仍然是世界上许多人的主要药物。随着草药产品的普及,它们的认知度越来越高,但许多正在迅速消失。气候变化进一步威胁着这些资源,使它们的保护成为一个紧迫的问题。本研究旨在评估伊朗特有濒危药用植物朱墨里亚(Zhumeria majdae)的分布范围和气候变化对其未来分布的潜在影响,并确定其优先保护区域。利用56个事件记录和7个环境变量,利用MaxEnt模型预测了2050年代和2070年代两种气候情景(RCP 4.5和RCP 8.5)下的当前和未来栖息地适宜性。模型运行良好(AUC = 0.977, TSS = 0.807)。所使用的变量中,太阳辐射贡献最大(26%),其次是坡度(12%)、pH指数(2.5%)、Bio6(1.1%)、Bio19(26.3%)、Bio10(0.7%)和Bio18(31.3%)。结果预测了霍尔木兹甘省、克尔曼省南部和法尔斯省的适宜范围。此外,模拟结果还表明,在气候变化情景下,马氏竹的地理分布发生了显著变化。预计到2050年代,在RCP 4.5和8.5条件下,适宜生境将分别扩大20.12%和29.95%。在21世纪70年代,在RCP 4.5下预计将增长21.63%,而在RCP 8.5下预计将略微收缩1.15%。基于这些发现,建议在预计在当前和未来气候下仍然适合的地区优先进行保护工作。建立原地和移地保护地点,在新规划的栖息地引入保护区,在新出现的适宜区启动栖息地恢复,可以提高物种的长期生存前景。
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