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More than just a heatmap: elevating XAI with rigorous evaluation metrics. 不仅仅是一张热图:用严格的评估指标提升XAI。
IF 3.8 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-10-28 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1674343
Dost Muhammad, Malika Bendechache

Background: Magnetic Resonance Imaging (MRI) and ultrasound are central to tumour diagnosis and treatment planning. Although Deep learning (DL) models achieve strong prediction performance, high computational demand and limited explainability can hinder clinical adoption. Common post hoc Explainable Artificial Intelligence (XAI) methods namely Grad-CAM, LIME, and SHAP often yield fragmented or anatomically misaligned saliency maps.

Methods: We propose SpikeNet, a hybrid framework that combines Convolutional Neural Networks (CNNs) for spatial feature encoding with Spiking Neural Networks (SNNs)for efficient, event driven processing. SpikeNet includes a native saliency module that produces explanations during inference. We also introduce XAlign, a metric that quantifies alignment between explanations and expert tumour annotations by integrating regional concentration, boundary adherence, and dispersion penalties. Evaluation follows patient level cross validation on TCGA-LGG (MRI, 22 folds) and BUSI (ultrasound, 5 folds), with slice level predictions aggregated to patient level decisions and BUSI treated as a three class task. We report per image latency and throughput alongside accuracy, precision, recall, F1, AUROC, and AUPRC.

Results: SpikeNet achieved high prediction performance with tight variability across folds. On TCGA-LGG it reached 97.12 ± 0.63 % accuracy and 97.43 ± 0.60 % F1; on BUSI it reached 98.23 ± 0.58 % accuracy and 98.32 ± 0.50 % F1. Patient level AUROC and AUPRC with 95% confidence intervals further support these findings. On a single NVIDIA RTX 3090 with batch size 16 and FP32 precision, per image latency was about 31 ms and throughput about 32 images per second, with the same settings applied to all baselines. Using XAlign, SpikeNet produced explanations with higher alignment than Grad-CAM, LIME, and SHAP on both datasets. Dataset level statistics, paired tests, and sensitivity analyses over XAlign weights and explanation parameters confirmed robustness.

Conclusion: SpikeNet delivers accurate, low latency, and explainable analysis for MRI and ultrasound by unifying CNN based spatial encoding, sparse spiking computation, and native explanations. The XAlign metric provides a clinically oriented assessment of explanation fidelity and supports consistent comparison across methods. These results indicate the potential of SpikeNet and XAlign for trustworthy and efficient clinical decision support.

背景:磁共振成像(MRI)和超声是肿瘤诊断和治疗计划的核心。尽管深度学习(DL)模型具有强大的预测性能,但高计算需求和有限的可解释性可能会阻碍临床应用。常见的事后可解释人工智能(XAI)方法,即Grad-CAM, LIME和SHAP,通常会产生碎片化或解剖错位的显著性图。方法:我们提出了SpikeNet,这是一个混合框架,将卷积神经网络(cnn)用于空间特征编码与spike神经网络(snn)相结合,用于高效的事件驱动处理。SpikeNet包括一个本地显著性模块,在推理过程中产生解释。我们还介绍了XAlign,这是一个通过整合区域浓度、边界粘附性和分散惩罚来量化解释和专家肿瘤注释之间的一致性的度量。评估遵循TCGA-LGG (MRI, 22倍)和BUSI(超声,5倍)的患者水平交叉验证,切片水平预测汇总到患者水平决策,BUSI被视为三级任务。我们报告每张图像的延迟和吞吐量以及准确性、精度、召回率、F1、AUROC和AUPRC。结果:SpikeNet具有较高的预测性能,且具有较强的折叠变异性。在TCGA-LGG上,准确率为97.12±0.63%,F1为97.43±0.60%;在BUSI上,准确率达到98.23±0.58%,F1达到98.32±0.50%。患者水平AUROC和AUPRC的95%置信区间进一步支持了这些发现。在批处理大小为16和FP32精度的单个NVIDIA RTX 3090上,每张图像延迟约为31毫秒,吞吐量约为每秒32张图像,所有基线的设置相同。使用XAlign, SpikeNet在两个数据集上生成的解释比Grad-CAM、LIME和SHAP的对齐度更高。数据集级别的统计、配对测试以及对XAlign权重和解释参数的敏感性分析证实了稳健性。结论:SpikeNet通过统一基于CNN的空间编码、稀疏尖峰计算和原生解释,为MRI和超声提供准确、低延迟和可解释的分析。XAlign指标提供了临床导向的解释保真度评估,并支持跨方法的一致比较。这些结果表明SpikeNet和XAlign在可靠和有效的临床决策支持方面的潜力。
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引用次数: 0
Preliminary in vitro hemolysis evaluation of MR-conditional blood pumps. 磁共振条件血泵体外溶血初步评价。
IF 3.8 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-10-23 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1671938
Dominik T Schulte, Carolina Pietsch, Natalija Topalovic, Michael Hofmann, Martin O Schmiady, Miriam Weisskopf, Marianne Schmid Daners

Purpose: Magnetic resonance imaging (MRI) during cardiopulmonary bypass is hindered by the incompatibility of conventional heart-lung machines, which contain metallic components that interfere with the MRI environment. This study evaluates the hemolytic performance of three MR-conditional blood pump prototypes-roller, non-occlusive roller, and centrifugal-designed for use during neonatal surgery.

Materials and methods: Each pump was tested using acid-citrate dextrose-stabilized bovine blood at a neonatal-relevant flow rate of 1 L/min. Due to limitations of the setup, a low pressure head of 10 mmHg was applied uniformly across experiments. Hemolysis was assessed using normalized index of hemolysis, and a linear mixed-effects model was applied to account for experimental variability.

Results: The roller pump showed the lowest hemolysis (1.84 ± 1.90 mg/100 L). The centrifugal pump showed the highest (8.43 ± 1.63 mg/100 L), alongside mechanical leakage. Random effects (SD = 2.07) indicated moderate inter-experimental variability.

Conclusion: While all prototypes performed comparably to standard references under controlled conditions, further testing at physiological pressure levels and stricter adherence to ASTM F1841 is necessary for broader validation.

目的:磁共振成像(MRI)在体外循环期间受到传统心肺机的不兼容性的阻碍,这些机器含有干扰MRI环境的金属部件。本研究评估了三种磁共振条件血泵原型的溶血性能-滚轮,非闭塞滚轮和离心机-设计用于新生儿手术。材料和方法:每台泵采用新生儿相关流量1l /min的酸-柠檬酸葡萄糖稳定牛血进行测试。由于设置的限制,在整个实验中均匀施加10 mmHg的低压压头。溶血使用归一化溶血指数进行评估,并采用线性混合效应模型来解释实验变异性。结果:滚柱泵溶血率最低(1.84±1.90 mg/100 L);离心泵泄漏量最高(8.43±1.63 mg/100 L),机械泄漏量次之。随机效应(SD = 2.07)显示适度的实验间变异。结论:虽然所有原型在受控条件下的表现与标准参考文献相当,但为了进行更广泛的验证,需要在生理压力水平下进行进一步的测试,并严格遵守ASTM F1841。
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引用次数: 0
Use of artificial intelligence in predicting in-hospital cardiac and respiratory arrest in an acute care environment-implications for clinical practice. 人工智能在急性护理环境中预测院内心脏和呼吸骤停中的应用——对临床实践的影响。
IF 3.8 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-10-10 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1681059
Geerthy Thambiraj, George Bazoukis, Amir Ghabousian, Jiandong Zhou, Sandeep Chandra Bollepalli, Eric M Isselbacher, Vivian Donahue, Jagmeet P Singh, Antonis A Armoundas

Background: Artificial intelligence (AI)-based models can augment clinical decision-making, including prediction, diagnosis, and treatment, in all aspects of medicine.

Research questions: The current systematic review aims to provide a summary of existing data about the role of machine learning (ML) techniques in predicting in-hospital cardiac arrest, life-threatening ventricular arrhythmias, and respiratory arrest.

Methods: The study was conducted in compliance with the Preferred Reporting Items for Systematic Reviews and Meta-analyses (PRISMA) framework. PubMed, Embase, and Web of Science without any restriction were searched to extract relevant manuscripts until October 20, 2023. Additionally, the reference list of all potential studies was searched to identify further relevant articles. Original publications were regarded as eligible if they only recruited adult patients (≥18 years of age), employed AI/ML algorithms for predicting cardiac arrest, life-threatening ventricular arrhythmias, and respiratory arrest in the setting of critical care, used data gathered from wards with critically ill patients (ICUs, cardiac ICUs, and emergency departments), and were published in English. The following information was extracted: first author, journal, ward, sample size, performance and features of ML and conventional models, and outcomes.

Results: ML algorithms have been used for cardiac arrest prediction using easily obtained variables as inputs. ML algorithms showed promising results (AUC 0.73-0.96) in predicting cardiac arrest in different settings, including critically ill ICU patients, patients in the emergency department and patients with sepsis, they demonstrated variable performance (AUC 0.54-0.94) in predicting respiratory arrest in COVID-19 patients, as well as other clinical settings.

Conclusion: ML algorithms have shown promising results in predicting in-hospital cardiac and respiratory arrest using readily available clinical data. These algorithms may enhance early identification of high risk patients and support timely interventions, thereby reducing mortality and morbidity rates. However, the prospective validation of these algorithms and their integration into clinical workflows need further exploration.

背景:基于人工智能(AI)的模型可以在医学的各个方面增强临床决策,包括预测、诊断和治疗。研究问题:当前的系统综述旨在总结机器学习(ML)技术在预测院内心脏骤停、危及生命的室性心律失常和呼吸骤停中的作用的现有数据。方法:本研究遵循系统评价和荟萃分析首选报告项目(PRISMA)框架进行。检索PubMed、Embase和Web of Science,检索到2023年10月20日之前的相关稿件。此外,检索所有潜在研究的参考文献列表,以确定进一步的相关文章。如果原始出版物仅招募成年患者(≥18岁),采用AI/ML算法预测危重监护环境下的心脏骤停、危及生命的室性心律失常和呼吸骤停,使用从危重患者病房(icu、心脏icu和急诊科)收集的数据,并以英文发表,则被视为符合条件。提取以下信息:第一作者、期刊、病房、样本量、机器学习和传统模型的性能和特征以及结果。结果:ML算法已用于心脏骤停预测,使用容易获得的变量作为输入。ML算法在预测重症监护室危重患者、急诊科患者和脓毒症患者的心脏骤停方面显示出良好的结果(AUC 0.73-0.96),在预测COVID-19患者的呼吸骤停以及其他临床环境方面表现出不同的表现(AUC 0.54-0.94)。结论:ML算法在利用现成的临床数据预测院内心脏和呼吸骤停方面显示出有希望的结果。这些算法可以增强对高危患者的早期识别并支持及时干预,从而降低死亡率和发病率。然而,这些算法的前瞻性验证及其与临床工作流程的整合需要进一步探索。
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引用次数: 0
Editorial: Magnetic neurophysiology: the cutting edge of real time neurodiagnostic technology. 社论:磁神经生理学:实时神经诊断技术的前沿。
IF 3.8 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-10-06 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1682837
Pegah Afra, Shigenori Kawabata, Glenn D R Watson, Timothy P L Roberts
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引用次数: 0
Development and usability testing of a depth camera-based web application for functionally relevant foot kinematics analysis. 开发和可用性测试的深度相机为基础的web应用程序的功能相关的足部运动学分析。
IF 3.8 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-10-03 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1677174
Fitri Anestherita, Angela B M Tulaar, Maria Regina Rachmawati, Em Yunir, Dante Saksono Harbuwono, Retno Asti Werdhani, Ahmad Yanuar Safri, Muhammad Febrian Rachmadi, Muhammad Hanif Nadhif, Azwien Niezam Hawalie M, Boya Nugraha, Safa Nabila Putri, Fiska Fianita, Thasya Niken Saputri

Introduction: KineFeet, a depth camera-based web tool for analyzing functional foot kinematics, was developed and tested in this study. The program was optimized for usability, affordability, and clinical relevance through an iterative design and development process.

Methods: The Azure Kinect DK camera records and analyzes sagittal and frontal plane foot movements in real time. A usability-focused study was created. Five physiatrists tested the KineFeet prototype for its ability to assess foot kinematics. Performance was measured by task completion success, error rate, and time. The System Usability Scale (SUS) measured user satisfaction. Quality assessments were also obtained through semi-structured interviews.

Results: Participants achieved an average success rate of 96.29%, with an error rate of 0.074% and an average completion time of 10 min 11 s. Time-Based Efficiency (TBE) showed that user performance (0.0442 tasks/s) was 1.21 times slower than expert user performance (0.05348 tasks/s). SUS yielded an average score of 66.5, indicating a good level of satisfaction and user acceptance.

Conclusion: KineFeet represents a promising innovation in assessing functional foot kinematics. The system demonstrated strong usability in preliminary testing and holds potential for broader clinical adoption following further development.

介绍:KineFeet是一款基于深度摄像头的网络工具,用于分析功能性足部运动学,在本研究中进行了开发和测试。该方案通过迭代设计和开发过程优化了可用性、可负担性和临床相关性。方法:Azure Kinect DK摄像头实时记录和分析足部矢状面和额平面运动。我们创建了一个以可用性为重点的研究。五名理疗师测试了KineFeet原型机评估足部运动学的能力。性能是通过任务完成成功、错误率和时间来衡量的。系统可用性量表(SUS)测量用户满意度。质量评估也通过半结构化访谈获得。结果:参与者平均成功率为96.29%,错误率为0.074%,平均完成时间为10分11秒。基于时间的效率(TBE)表明,用户性能(0.0442 task /s)比专家用户性能(0.05348 task /s)慢1.21倍。SUS的平均得分为66.5分,表明满意度和用户接受度很高。结论:KineFeet代表了评估功能性足部运动学的一个有前途的创新。该系统在初步测试中显示出强大的可用性,并在进一步开发后具有更广泛的临床应用潜力。
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引用次数: 0
Exosome engineering for targeted therapy of brain-infecting pathogens: molecular tools, delivery platforms, and translational advances. 用于脑感染病原体靶向治疗的外泌体工程:分子工具、传递平台和转化进展。
IF 3.8 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-10-02 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1655471
Hope Onohuean, Sarad Pawar Naik Bukke, Chandrashekar Thalluri, Kasim Sakran Abass, Yahya Essop Choonara

Central nervous system (CNS) infections caused by pathogens such as HIV, Herpes simplex virus, Cryptococcus neoformans, and Toxoplasma gondii remain among the most difficult to treat due to the physiological barrier posed by the blood-brain barrier (BBB), pathogen latency, and systemic toxicity associated with conventional therapies. Exosome-based delivery systems are becoming a game-changing platform that can solve these therapeutic problems using their natural biocompatibility, minimal immunogenicity, and capacity to cross the BBB. This review current developments in exosome engineering that aim to make brain-targeted therapy for neuroinfectious illnesses more selective and effective. Much focus is on new molecular methods like pathogen-specific ligand display, aptamer conjugation, lipid modification, and click-chemistry-based surface functionalisation. These methods make it possible to target diseased areas of the brain precisely. Exosomes can also carry therapeutic payloads, such as anti-viral and antifungal drugs, gene editing tools like CRISPR/Cas9 and siRNA, and more. This makes them helpful in changing pathogens' persistence and the host's immunological responses. The paper tackle problems with translation, such as biodistribution, immunogenicity, GMP production, and regulatory issues. Future possibilities like synthetic exosomes, combinatory medicines, and delivery design that uses AI. The combination of nanotechnology, molecular biology, and infectious disease therapies shows that exosome engineering offers a new way to meet the clinical needs that are not satisfied in treating CNS infections.

由HIV、单纯疱疹病毒、新型隐球菌和刚地弓形虫等病原体引起的中枢神经系统(CNS)感染仍然是最难治疗的,这是由于血脑屏障(BBB)、病原体潜伏期和常规治疗相关的全身毒性所造成的生理屏障。基于外泌体的递送系统正在成为一个改变游戏规则的平台,它可以利用其天然的生物相容性、最小的免疫原性和穿越血脑屏障的能力来解决这些治疗问题。本文综述了旨在使神经感染性疾病的脑靶向治疗更具选择性和有效性的外泌体工程的最新进展。重点是新的分子方法,如病原体特异性配体展示、适体偶联、脂质修饰和基于点击化学的表面功能化。这些方法使得精确定位大脑病变区域成为可能。外泌体还可以携带治疗有效载荷,如抗病毒和抗真菌药物,基因编辑工具,如CRISPR/Cas9和siRNA等。这使得它们有助于改变病原体的持久性和宿主的免疫反应。本文解决的问题与翻译,如生物分布,免疫原性,GMP生产和监管问题。未来的可能性包括合成外泌体、组合药物和使用人工智能的递送设计。纳米技术、分子生物学和传染病治疗的结合表明,外泌体工程为治疗中枢神经系统感染的临床需求提供了一条新的途径。
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引用次数: 0
Non-invasive imaging techniques for predicting healing status of diabetic foot ulcers: a ten-year systematic review. 预测糖尿病足溃疡愈合状态的非侵入性成像技术:十年系统回顾。
IF 3.8 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-09-29 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1648973
Nila N Sari, Quoc C Ngo, Nemuel D Pah, Rajna Ogrin, Elif Ekinci, Akram Hourani, Barbara Polus, Dinesh K Kumar

Introduction: Early and accurate detection of diabetes-related foot ulcers (DFU) that may become chronic is essential to prevent long-term disability, amputation, and mortality. Various non-invasive imaging techniques have been developed to detect and monitor DFU progression, but none have yet been widely adopted in clinical practice. This review summarizes current advancements in non-invasive image techniques for DFU wound healing prediction and identifies research directions to support clinical translation.

Methods: A systematic, multi-disciplinary review was conducted focusing on three imaging methods: photographic, hyperspectral, and thermal imaging. Articles published between July 2014 and July 2024 were searched across five databases: PubMed, Scopus, CINAHL, Embase, and Web of Science. The search was limited to English-language, peer-reviewed journal articles. The review followed PRISMA guidelines and applied the CASP quality appraisal tool.

Results: The initial search identified 2,937 articles, of which 22 studies met the inclusion criteria, including 17 original studies (9 medical and 8 engineering) on DFU healing prediction using imaging techniques and 5 relevant review articles.

Discussion: Each imaging method offers specific benefits and faces unique limitations: photographic imaging is user-friendly but lighting-sensitive; thermal imaging reflects inflammation but requires multimodal integration; hyperspectral imaging provides biochemical insight but is costly and less portable. Visual and thermal imaging, in particular, demonstrate strong potential for early and real-time prediction when combined with machine learning/deep learning. These methods offer portability, ease of use, and potential for automated analysis on a single device, making them suitable for clinical and community settings. However, challenges such as standardization and integration complexity remain. Continued research with larger datasets and improved validation is needed to enhance clinical readiness.

早期准确发现可能成为慢性的糖尿病相关性足溃疡(DFU)对于预防长期残疾、截肢和死亡至关重要。各种非侵入性成像技术已被开发用于检测和监测DFU的进展,但尚未在临床实践中广泛采用。本文综述了目前无创图像技术用于DFU伤口愈合预测的进展,并确定了支持临床转化的研究方向。方法:对三种成像方法:摄影、高光谱和热成像进行了系统的、多学科的综述。2014年7月至2024年7月期间发表的文章在五个数据库中进行了检索:PubMed、Scopus、CINAHL、Embase和Web of Science。搜索仅限于同行评议的英文期刊文章。评审遵循PRISMA指南并应用CASP质量评价工具。结果:初步检索到2937篇文章,其中22篇研究符合纳入标准,包括17篇利用成像技术预测DFU愈合的原始研究(9篇医学研究,8篇工程研究)和5篇相关综述文章。讨论:每种成像方法都有其独特的优点和局限性:摄影成像是用户友好的,但对光线敏感;热成像反映炎症,但需要多模式整合;高光谱成像可以提供生物化学方面的信息,但成本高且便携性差。特别是视觉和热成像,在与机器学习/深度学习相结合时,显示出早期和实时预测的强大潜力。这些方法具有便携性、易用性和在单个设备上进行自动分析的潜力,适用于临床和社区环境。然而,标准化和集成复杂性等挑战仍然存在。需要继续研究更大的数据集和改进的验证,以提高临床准备。
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引用次数: 0
Feasibility analysis of automated cleaning in biopharmaceutical production using cleaning-in-place concepts from food production. 利用食品生产中的就地清洗概念对生物制药生产中的自动清洗进行可行性分析。
IF 3.8 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-09-22 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1540779
Ferdinand Groten, Chris Henze, Matthias Joppa, Laura Herbst, Bastian Nießing, Marc Mauermann, Robert H Schmitt

In biopharmaceutical production involving cells, cell-derived products, or tissues, the cleaning of surfaces that come into direct or indirect contact with the product is currently performed mostly by hand as the initial step in decontamination. This manual approach leads to production inefficiencies, reduced reproducibility of decontamination processes, and product losses. In food production, automated processes are preferred for the decontamination of interior product contact surfaces. This article studies the feasibility of adapting the automated cleaning-in-place concepts used in the food industry to biopharmaceutical production. The focus is on spray cleaning processes and validation by cleaning simulation. An existing automated cell production platform is used as a case study for validation. The results indicate that modifying an existing platform to support cleaning-in-place presents significant challenges. However, the article outlines general design guidelines for developing new biopharmaceutical production platforms that can accommodate automated cleaning.

在涉及细胞、细胞衍生产品或组织的生物制药生产中,与产品直接或间接接触的表面的清洁目前主要是手工进行的,作为去污染的第一步。这种人工方法导致生产效率低下,降低了净化过程的可重复性,以及产品损失。在食品生产中,自动化过程是首选的内部产品接触表面的净化。本文研究了将食品工业中使用的自动就地清洗概念应用于生物制药生产的可行性。重点是喷雾清洗过程和清洗模拟验证。现有的自动化细胞生产平台被用作验证的案例研究。结果表明,修改现有平台以支持就地清洁是一项重大挑战。然而,本文概述了开发可容纳自动清洗的新生物制药生产平台的一般设计准则。
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引用次数: 0
Using machine learning methods to investigate the impact of comorbidities and clinical indicators on the mortality rate of COVID-19. 利用机器学习方法探讨合并症和临床指标对COVID-19死亡率的影响。
IF 3.8 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-09-22 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1621158
Yueh-Chen Hsieh, Sin Chen, Shu-Yu Tsao, Jiun-Ruey Hu, Wan-Ting Hsu, Chien-Chang Lee

Background: This study aims to develop a machine learning model to predict the 30-day mortality risk of hospitalized COVID-19 patients while leveraging federated learning to enhance data privacy and expand the model's applicability. Additionally, SHapley Additive exPlanations (SHAP) values were utilized to assess the impact of comorbidities on mortality.

Methods: A retrospective analysis was conducted on 6,321 clinical records of hospitalized COVID-19 patients between January 2021 and October 2022. After excluding cases involving patients under 18 years of age and non-Omicron infections, a total of 4,081 records were analyzed. Key features included three demographic data, six vital signs at admission, and 79 underlying comorbidities. Four machine learning models were compared, including Lasso, Random Forest, XGBoost, and TabNet, with XGBoost demonstrating superior performance. Federated learning was implemented to enable collaborative model training across multiple medical institutions while maintaining data security. SHAP values were applied to interpret the contribution of each comorbidity to the model's predictions.

Results: A subset of 2,156 records from the Taipei branch was used to evaluate model performance. XGBoost achieved the highest AUC of 0.96 and a sensitivity of 0.94. Two versions of the XGBoost model were trained: one incorporating vital signs, suitable for emergency room applications where patients come in with unstable vital signs, and another excluding vital signs, optimized for outpatient settings where we encounter patients with multiple comorbidities. After implementing federated learning, the AUC of the Taipei cohort decreased to 0.90, while the performance of other cohorts improved to meet the required standards. SHAP analysis identified comorbidities including diabetes mellitus, cerebrovascular disease, and chronic lung disease to have a neutral or even protective association with 30-day mortality.

Conclusion: XGBoost outperformed other models making it a viable tool for both emergency and outpatient settings. The study underscores the importance of chronic disease assessment in predicting COVID-19 mortality, revealing some comorbidities such as diabetes mellitus, cerebrovascular disease and chronic lung disease to have protective association with 30-day mortality. These findings suggest potential refinements in current treatment guidelines, particularly concerning high-risk conditions. The integration of federated learning further enhances the model's clinical applicability while preserving patient privacy.

背景:本研究旨在开发一种机器学习模型来预测COVID-19住院患者30天的死亡风险,同时利用联邦学习来增强数据隐私并扩展模型的适用性。此外,SHapley加性解释(SHAP)值用于评估合并症对死亡率的影响。方法:对我院2021年1月至2022年10月收治的6321例新冠肺炎住院患者的临床资料进行回顾性分析。在排除了18岁以下患者和非omicron感染的病例后,总共分析了4081份记录。主要特征包括3个人口统计数据,入院时的6个生命体征和79个潜在的合并症。我们比较了Lasso、Random Forest、XGBoost和TabNet四种机器学习模型,其中XGBoost表现出了更优越的性能。实现联邦学习是为了支持跨多个医疗机构的协作模型训练,同时维护数据安全性。应用SHAP值来解释每种共病对模型预测的贡献。结果:以台北分行2156条记录为样本,评估模型的效能。XGBoost的AUC最高,为0.96,灵敏度为0.94。我们训练了两种版本的XGBoost模型:一种包含生命体征,适用于生命体征不稳定的急诊室应用,另一种不包括生命体征,针对门诊环境进行了优化,在门诊环境中我们遇到了多种合并症的患者。实施联邦学习后,台北队列的AUC下降到0.90,而其他队列的表现则有所改善,达到了要求的标准。SHAP分析发现,包括糖尿病、脑血管疾病和慢性肺部疾病在内的合并症与30天死亡率有中性甚至保护性的关联。结论:XGBoost优于其他模型,使其成为急诊和门诊设置的可行工具。该研究强调了慢性病评估在预测COVID-19死亡率中的重要性,揭示了一些合并症,如糖尿病、脑血管疾病和慢性肺部疾病与30天死亡率存在保护性关联。这些发现建议对当前的治疗指南进行潜在的改进,特别是在高危情况下。联邦学习的融合进一步增强了模型的临床适用性,同时保护了患者隐私。
{"title":"Using machine learning methods to investigate the impact of comorbidities and clinical indicators on the mortality rate of COVID-19.","authors":"Yueh-Chen Hsieh, Sin Chen, Shu-Yu Tsao, Jiun-Ruey Hu, Wan-Ting Hsu, Chien-Chang Lee","doi":"10.3389/fmedt.2025.1621158","DOIUrl":"10.3389/fmedt.2025.1621158","url":null,"abstract":"<p><strong>Background: </strong>This study aims to develop a machine learning model to predict the 30-day mortality risk of hospitalized COVID-19 patients while leveraging federated learning to enhance data privacy and expand the model's applicability. Additionally, SHapley Additive exPlanations (SHAP) values were utilized to assess the impact of comorbidities on mortality.</p><p><strong>Methods: </strong>A retrospective analysis was conducted on 6,321 clinical records of hospitalized COVID-19 patients between January 2021 and October 2022. After excluding cases involving patients under 18 years of age and non-Omicron infections, a total of 4,081 records were analyzed. Key features included three demographic data, six vital signs at admission, and 79 underlying comorbidities. Four machine learning models were compared, including Lasso, Random Forest, XGBoost, and TabNet, with XGBoost demonstrating superior performance. Federated learning was implemented to enable collaborative model training across multiple medical institutions while maintaining data security. SHAP values were applied to interpret the contribution of each comorbidity to the model's predictions.</p><p><strong>Results: </strong>A subset of 2,156 records from the Taipei branch was used to evaluate model performance. XGBoost achieved the highest AUC of 0.96 and a sensitivity of 0.94. Two versions of the XGBoost model were trained: one incorporating vital signs, suitable for emergency room applications where patients come in with unstable vital signs, and another excluding vital signs, optimized for outpatient settings where we encounter patients with multiple comorbidities. After implementing federated learning, the AUC of the Taipei cohort decreased to 0.90, while the performance of other cohorts improved to meet the required standards. SHAP analysis identified comorbidities including diabetes mellitus, cerebrovascular disease, and chronic lung disease to have a neutral or even protective association with 30-day mortality.</p><p><strong>Conclusion: </strong>XGBoost outperformed other models making it a viable tool for both emergency and outpatient settings. The study underscores the importance of chronic disease assessment in predicting COVID-19 mortality, revealing some comorbidities such as diabetes mellitus, cerebrovascular disease and chronic lung disease to have protective association with 30-day mortality. These findings suggest potential refinements in current treatment guidelines, particularly concerning high-risk conditions. The integration of federated learning further enhances the model's clinical applicability while preserving patient privacy.</p>","PeriodicalId":94015,"journal":{"name":"Frontiers in medical technology","volume":"7 ","pages":"1621158"},"PeriodicalIF":3.8,"publicationDate":"2025-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12497763/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145245872","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Improving accuracy in percutaneous lung puncture using thoracic respiratory synchronization and laser angle guidance. 胸腔呼吸同步和激光角度引导提高经皮肺穿刺的准确性。
IF 3.8 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-09-19 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1659231
Qingjie Yang, Qingtian Li, Shenghua Lv, Linhui Lan, Mingyang Wang, Kaibao Han

Objective: To explore the feasibility of enhancing the accuracy of percutaneous lung puncture through matching the respiratory activity of the thorax and performing puncture under the guidance of a laser angle guider.

Methods: A retrospective case-control study was adopted. Collected data of patients with pulmonary nodules undergoing puncture. They were categorized into the conventional puncture group (Con group), the laser guidance group (Laser group), and the thoracic respiratory activity matching group (Ram group) based on whether the puncture was guided by the laser angle guider and the application of the thorax respiratory activity matching technique.

Results: 277 patients were included: 96 in the Con group, 93 in the Laser group, and 88 in the Ram group. There were no statistically significant differences in the puncture purpose, age, gender, BMI, maximum diameter of pulmonary nodules, location of pulmonary nodules, and distance from the skin at the puncture point among the three groups (P > 0.05). Nevertheless, key outcomes showed the Ram group had better results than the Laser group, which were better than the Con group: the rate of reaching the predetermined position on the first puncture (67.05% vs. 37.63% vs. 23.96%), number of CT scans (3.66 ± 1.06 vs. 4.09 ± 1.05 vs. 4.50 ± 1.08 times), and procedure time (23.05 ± 13.89 vs. 28.83 ± 13.78 vs. 35.14 ± 14.20 min) (all P < 0.05). Complication rates were sequentially lower (7.95% vs. 16.13% vs. 26.04%; P = 0.146).

Conclusion: Puncture by matching the thoracic respiratory activity and under the guidance of a laser angle guider can effectively improve the accuracy of percutaneous lung puncture, reduce complications. Furthermore, the procedure is straightforward, warranting further evaluation in larger, prospective studies.

Clinical trial registration: Chinese Clinical Trial Registry (ChiCTR), identifier (ChiCTR2300069384).

目的:探讨在激光导角仪引导下配合胸腔呼吸活动进行穿刺,提高经皮肺穿刺准确性的可行性。方法:采用回顾性病例对照研究。收集肺结节穿刺患者资料。根据穿刺是否采用激光导角器引导及是否应用胸腔呼吸活动匹配技术,将其分为常规穿刺组(Con组)、激光引导组(laser组)和胸腔呼吸活动匹配组(Ram组)。结果:共纳入277例患者:Con组96例,Laser组93例,Ram组88例。三组患者穿刺目的、年龄、性别、BMI、肺结节最大直径、肺结节位置、穿刺点距皮肤距离等差异均无统计学意义(P < 0.05)。然而,关键结果显示,Ram组在首次穿刺到达预定位置的率(67.05% vs. 37.63% vs. 23.96%)、CT扫描次数(3.66±1.06 vs. 4.09±1.05 vs. 4.50±1.08)、手术时间(23.05±13.89 vs. 28.83±13.78 vs. 35.14±14.20 min)均优于Con组(P = 0.146)。结论:配合胸腔呼吸活动,在激光导角仪引导下穿刺,可有效提高经皮肺穿刺的准确性,减少并发症。此外,该方法简单明了,值得在更大规模的前瞻性研究中进行进一步评估。临床试验注册:中国临床试验注册中心(ChiCTR),编号(ChiCTR2300069384)。
{"title":"Improving accuracy in percutaneous lung puncture using thoracic respiratory synchronization and laser angle guidance.","authors":"Qingjie Yang, Qingtian Li, Shenghua Lv, Linhui Lan, Mingyang Wang, Kaibao Han","doi":"10.3389/fmedt.2025.1659231","DOIUrl":"10.3389/fmedt.2025.1659231","url":null,"abstract":"<p><strong>Objective: </strong>To explore the feasibility of enhancing the accuracy of percutaneous lung puncture through matching the respiratory activity of the thorax and performing puncture under the guidance of a laser angle guider.</p><p><strong>Methods: </strong>A retrospective case-control study was adopted. Collected data of patients with pulmonary nodules undergoing puncture. They were categorized into the conventional puncture group (Con group), the laser guidance group (Laser group), and the thoracic respiratory activity matching group (Ram group) based on whether the puncture was guided by the laser angle guider and the application of the thorax respiratory activity matching technique.</p><p><strong>Results: </strong>277 patients were included: 96 in the Con group, 93 in the Laser group, and 88 in the Ram group. There were no statistically significant differences in the puncture purpose, age, gender, BMI, maximum diameter of pulmonary nodules, location of pulmonary nodules, and distance from the skin at the puncture point among the three groups (<i>P</i> > 0.05). Nevertheless, key outcomes showed the Ram group had better results than the Laser group, which were better than the Con group: the rate of reaching the predetermined position on the first puncture (67.05% vs. 37.63% vs. 23.96%), number of CT scans (3.66 ± 1.06 vs. 4.09 ± 1.05 vs. 4.50 ± 1.08 times), and procedure time (23.05 ± 13.89 vs. 28.83 ± 13.78 vs. 35.14 ± 14.20 min) (all <i>P</i> < 0.05). Complication rates were sequentially lower (7.95% vs. 16.13% vs. 26.04%; <i>P</i> = 0.146).</p><p><strong>Conclusion: </strong>Puncture by matching the thoracic respiratory activity and under the guidance of a laser angle guider can effectively improve the accuracy of percutaneous lung puncture, reduce complications. Furthermore, the procedure is straightforward, warranting further evaluation in larger, prospective studies.</p><p><strong>Clinical trial registration: </strong>Chinese Clinical Trial Registry (ChiCTR), identifier (ChiCTR2300069384).</p>","PeriodicalId":94015,"journal":{"name":"Frontiers in medical technology","volume":"7 ","pages":"1659231"},"PeriodicalIF":3.8,"publicationDate":"2025-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12491258/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145234706","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Frontiers in medical technology
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