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Enhancing nucleic acid delivery by the integration of artificial intelligence into lipid nanoparticle formulation. 通过将人工智能整合到脂质纳米颗粒配方中,增强核酸传递。
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-06-16 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1591119
Kagya Amoako, Amir Mokhammad, Afrida Malik, Sumith Yesudasan, Anas Wheba, Oluwanifemi Olagunju, Sean X Gu, Timur Yarovinsky, Edward Vincent S Faustino, Juliane Nguyen, John Hwa

The advent of messenger RNA (mRNA) therapeutics has revolutionized medicine, with its potential underscored by rapid advancements during the COVID-19 pandemic. Despite its promise, nucleic acid delivery remains a formidable challenge due to enzymatic degradation, cellular uptake barriers, and endosomal trapping. Therapeutic lipid nanoparticles (LNPs), pioneered in the 1970s, have emerged as the gold standard for delivering mRNA and other nucleic acids, offering unparalleled advantages in stability, biocompatibility, and cellular targeting. This review explores the evolution and design of LNPs, focusing on their role in hematologic therapies and platelet transfection, where unique challenges arise due to platelets' anucleate nature. The paper systematically evaluates the composition of LNPs, highlighting the role of ionizable, cationic, and neutral lipids in optimizing delivery efficiency, stability, and immune response modulation. Strategies to overcome platelet transfection barriers, including tailored lipid compositions and particle engineering, are discussed alongside advances in artificial intelligence (AI) for predictive nanoparticle design. Furthermore, it examines various nucleic acid cargoes, including mRNA, siRNA, and miRNA, and their therapeutic potential in addressing platelet-related disorders and advancing personalized medicine. Finally, the review delves into emerging technologies and the integration of AI to overcome existing barriers in nucleic acid delivery. By fostering interdisciplinary collaboration, this work aims to catalyze discoveries in LNP-based therapeutics and transformative advancements in hematologic treatments.

信使RNA (mRNA)疗法的出现彻底改变了医学,其潜力在2019冠状病毒病大流行期间得到了迅速发展。尽管前景光明,但由于酶降解、细胞摄取障碍和内体捕获,核酸递送仍然是一个艰巨的挑战。治疗性脂质纳米颗粒(LNPs)于20世纪70年代首创,已成为递送mRNA和其他核酸的金标准,在稳定性、生物相容性和细胞靶向性方面具有无与伦比的优势。这篇综述探讨了LNPs的进化和设计,重点是它们在血液治疗和血小板转染中的作用,其中由于血小板的无核性质而产生了独特的挑战。本文系统地评价了LNPs的组成,强调了电离性、阳离子性和中性脂质在优化递送效率、稳定性和免疫反应调节中的作用。克服血小板转染障碍的策略,包括定制脂质组成和颗粒工程,以及人工智能(AI)预测纳米颗粒设计的进展。此外,它还检查了各种核酸货物,包括mRNA, siRNA和miRNA,以及它们在解决血小板相关疾病和推进个性化医疗方面的治疗潜力。最后,综述深入探讨了新兴技术和人工智能的整合,以克服现有的核酸递送障碍。通过促进跨学科合作,这项工作旨在催化基于lnp的治疗方法的发现和血液学治疗的变革性进步。
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引用次数: 0
Deep learning for MRI-based acute and subacute ischaemic stroke lesion segmentation-a systematic review, meta-analysis, and pilot evaluation of key results. 基于mri的急性和亚急性缺血性脑卒中病变分割的深度学习-关键结果的系统回顾,荟萃分析和试点评估。
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-06-10 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1491197
Makram Baaklini, Maria Del C Valdés Hernández

Background: Segmentation of ischaemic stroke lesions from magnetic resonance images (MRI) remains a challenging task mainly due to the confounding appearance of these lesions with other pathologies, and variations in their presentation depending on the lesion stage (i.e., hyper-acute, acute, subacute and chronic). Works on the theme have been reviewed, but none of the reviews have addressed the seminal question on what would be the optimal architecture to address this challenge. We systematically reviewed the literature (2015-2023) for deep learning algorithms that segment acute and/or subacute stroke lesions on brain MRI seeking to address this question, meta-analysed the data extracted, and evaluated the results.

Methods and materials: Our review, registered in PROSPERO (ID: CRD42023481551), involved a systematic search from January 2015 to December 2023 in the following databases: IEE Explore, MEDLINE, ScienceDirect, Web of Science, PubMed, Springer, and OpenReview.net. We extracted sample characteristics, stroke stage, imaging protocols, and algorithms, and meta-analysed the data extracted. We assessed the risk of bias using NIH's study quality assessment tool, and finally, evaluated our results using data from the ISLES-2015-SISS dataset.

Results: From 1485 papers, 41 were ultimately retained. 13/41 studies incorporated attention mechanisms in their architecture, and 39/41 studies used the Dice Similarity Coefficient to assess algorithm performance. The generalisability of the algorithms reviewed was generally below par. In our pilot analysis, the UResNet50 configuration, which was developed based on the most comprehensive architectural components identified from the reviewed studies, demonstrated a better segmentation performance than the attention-based AG-UResNet50.

Conclusion: We found no evidence that favours using attention mechanisms in deep learning architectures for acute stroke lesion segmentation on MRI data, and the use of a U-Net configuration with residual connections seems to be the most appropriate configuration for this task.

Systematic review registration: https://www.crd.york.ac.uk/PROSPERO/view/CRD42023481551, PROSPERO CRD42023481551.

背景:从磁共振图像(MRI)中分割缺血性脑卒中病变仍然是一项具有挑战性的任务,主要是因为这些病变与其他病理相混淆,并且其表现随病变阶段(即超急性、急性、亚急性和慢性)而变化。关于这个主题的工作已经被审查过了,但是没有一个审查解决了解决这个挑战的最优架构的根本性问题。为了解决这一问题,我们系统地回顾了2015-2023年关于深度学习算法的文献(通过脑MRI对急性和/或亚急性中风病变进行分割),对提取的数据进行了meta分析,并对结果进行了评估。方法和材料:我们的综述注册在PROSPERO (ID: CRD42023481551),涉及2015年1月至2023年12月在以下数据库中的系统检索:IEE Explore、MEDLINE、ScienceDirect、Web of Science、PubMed、施普林格和OpenReview.net。我们提取了样本特征、脑卒中分期、成像方案和算法,并对提取的数据进行了meta分析。我们使用NIH的研究质量评估工具评估偏倚风险,最后使用ISLES-2015-SISS数据集的数据评估我们的结果。结果:1485篇论文中,最终保留41篇。13/41的研究将注意力机制纳入其架构,39/41的研究使用骰子相似系数来评估算法性能。所审查算法的通用性通常低于标准。在我们的试点分析中,UResNet50配置是基于从所审查的研究中确定的最全面的架构组件开发的,显示出比基于注意力的AG-UResNet50更好的分割性能。结论:我们没有发现证据表明在深度学习架构中使用注意机制对MRI数据进行急性卒中病变分割,使用带有残余连接的U-Net配置似乎是该任务最合适的配置。系统评价注册:https://www.crd.york.ac.uk/PROSPERO/view/CRD42023481551, PROSPERO CRD42023481551。
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引用次数: 0
Hyperspectral abdominal laparoscopy with real-time quantitative tissue oxygenation imaging: a live porcine study. 实时定量组织氧合成像的高光谱腹腔腹腔镜:活猪研究。
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-06-05 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1549245
Oscar MacCormac, Conor C Horgan, Dale Waterhouse, Philip Noonan, Mirek Janatka, Richard Miles, Jaco Jacobs, Cameron Dockerill, Théo Trotouin, Alexis Schizas, Barbara Seeliger, Sebastien Ourselin, Michael Ebner, Tom Vercauteren, Jonathan Shapey

Background: Ischaemia is a critical complication, and can result in poor surgical outcomes. While intra-operative overt ischaemia can be perceived with the naked eye, timely recognition of borderline perfusion can prevent post-operative ischaemic complications, which is particularly relevant for colorectal anastomoses. Consequently, there is a clinical need for new technologies to intra-operatively assess tissue oxygenation (indicative of end organ perfusion), with minimal disruption to the surgical workflow. Here we present a hyperspectral imaging (HSI) system for laparoscopic surgery. This system provides live, easy to interpret, tissue oxygenation (StO2) maps with associated quantitative values.

Methods: White light view and tissue oxygenation maps were reconstructed from a protoype laparoscopic Hyperspectral Surgical System (HSS). First, in a live porcine model (55 kg female), the mesentery of a small bowel loop was temporarily occluded with a laparoscopic grasper, then released whilst being imaged with HSI. The quantitative StO2 values obtained from the HSS were compared with those of a non-invasive tissue oximetry probe (Moor VMS-Oxy, Moor Instruments Ltd, United Kingdom). Secondly, mimicking a laparoscopic colon resection and anastomosis, the colorectal junction was mobilised laparoscopically, exteriorised, transected, anastomosed and repositioned in the abdominal cavity. In order to compare healthy and ischaemic colon, the distal part was intentionally devascularised. Tissue oxygenation maps were compared with indocyanine green fluorescence angiography (ICG-FA) of the anastomotic region.

Results: The HSS was used as the primary scope to complete a laparoscopic colorectal anastomosis, providing a simultaneous white light view and hyperspectral information. Quantitative results from small bowel imaging were shown to correlate with measurements from the superficial tissue oximetry probe. Real-time tissue oxygenation maps were shown to visually correlate with ICG-FA.

Conclusion: The HSS can guide laparoscopic surgical procedures whilst providing visual and quantitative tissue oxygenation information in a live animal model. This paves the way for further studies to assess clinical applications.

背景:缺血是一种严重的并发症,可导致较差的手术效果。术中明显缺血可通过肉眼观察,但及时识别临界灌注可预防术后缺血并发症,这对结直肠吻合术尤为重要。因此,临床需要新的技术来评估术中组织氧合(表明终末器官灌注),同时尽量减少对手术工作流程的干扰。在这里,我们提出一种用于腹腔镜手术的高光谱成像(HSI)系统。该系统提供实时,易于解释,组织氧合(StO2)图与相关的定量值。方法:利用原型腹腔镜高光谱手术系统(HSS)重建白光视图和组织氧合图。首先,在活猪模型(55公斤雌性)中,用腹腔镜抓手暂时阻塞小肠环的肠系膜,然后在HSI成像时释放。将HSS获得的定量StO2值与无创组织血氧仪探针(Moor VMS-Oxy, Moor Instruments Ltd,英国)的结果进行比较。其次,模仿腹腔镜结肠切除术和吻合,在腹腔镜下移动结直肠,取出,切开,吻合并在腹腔内重新定位。为了比较健康和缺血的结肠,我们有意地将远端断流。将组织氧合图与吻合区吲哚菁绿荧光血管造影(ICG-FA)进行比较。结果:HSS作为主要镜完成腹腔镜结肠吻合术,同时提供白光视图和高光谱信息。小肠成像的定量结果显示与浅表组织血氧测定探针的测量结果相关。实时组织氧合图显示与ICG-FA视觉相关。结论:在活体动物模型中,HSS可以指导腹腔镜手术,同时提供视觉和定量的组织氧合信息。这为进一步研究评估临床应用铺平了道路。
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引用次数: 0
Regulatory landscape of accelerated approval pathways for medical devices in the United States and the European Union. 美国和欧盟医疗器械加速审批途径的监管格局。
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-15 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1586070
Tanvi Gupte, Tushar Nitave, Jogarao Gobburu

The landscape of medical device regulation is rapidly evolving, driven by innovations and the need to bring these technologies to patients more efficiently. This review provides a comprehensive analysis of the accelerated access pathways for medical devices in the United States (US) and the European Union (EU), focusing on the Breakthrough Devices Program (BDP) in the US and the evolving regulatory framework within the EU. Analysis of Food and Drug Administration (FDA) data reveals that from 2015 to 2024, only 12.3% of the 1,041 BDP-designated devices received marketing authorization, with mean decision times of 152, 262, and 230 days for 510(k), de novo, and PMA pathways respectively-significantly faster than standard approvals for de novo (338 days) and PMA (399 days). In the EU, where no specific accelerated pathway exists, the recently implemented Medical Device Regulation and Health Technology Assessment Regulation aim to harmonize approval processes, with joint clinical assessments beginning in 2026. The analysis explores the interplay between regulatory approval, funding mechanisms, and coverage policies that collectively determine the accessibility of medical devices. The unique challenges associated with emerging technologies and the implementation of accelerated pathways are also discussed. We recommend global regulatory convergence through harmonized standards, mutual recognition agreements, and unified post-market surveillance systems to balance innovation with patient safety.

在创新和更有效地将这些技术带给患者的需要的推动下,医疗器械监管的格局正在迅速演变。本综述全面分析了美国(US)和欧盟(EU)医疗器械的加速准入途径,重点关注美国的突破性器械计划(BDP)和欧盟内不断发展的监管框架。美国食品和药物管理局(FDA)数据分析显示,从2015年到2024年,1041个bdp指定的器械中只有12.3%获得了上市许可,510(k)、新生和PMA途径的平均决策时间分别为152、262和230天,明显快于新生(338天)和PMA(399天)的标准批准。在欧盟,没有特定的加速途径,最近实施的医疗器械法规和卫生技术评估法规旨在协调批准流程,并于2026年开始进行联合临床评估。该分析探讨了监管批准、资助机制和覆盖政策之间的相互作用,这些因素共同决定了医疗器械的可及性。与新兴技术和加速路径的实施相关的独特挑战也进行了讨论。我们建议通过协调标准、相互承认协议和统一的上市后监测系统来实现全球监管趋同,以平衡创新与患者安全。
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引用次数: 0
Comparative evaluation of accuracy, precision, and radiation dose between mindways and low-dose iCare QCT for lumbar spine BMD using the European spine phantom. 使用欧洲脊柱假体的mindways和低剂量iCare QCT对腰椎BMD的准确性、精密度和辐射剂量的比较评估。
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-12 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1575553
Yujie Li, Tiantian Yin, Qiushi Yang, Heli Han, Zeguo Wang, Wanjiang Yu

Background: Quantitative computed tomography (QCT) has received growing attention for its utility in bone mineral density (BMD) assessment and osteoporosis diagnosis.

Objective: To assess the accuracy and precision of lumbar spine BMD measurements obtained using low-dose iCare QCT, based on the European Spine Phantom (ESP).

Methods: Paired t-test was employed to compare BMD values measured under normal-dose and low-dose scan protocols using Mindways and iCare QCT systems. Accuracy was evaluated using relative measurement error (RME), and precision was assessed via relative standard deviation (RSD). Pearson correlation coefficients and Bland-Altman analysis were used to examine measurement correlation and agreement.

Results: For Mindways QCT, RMEs of L1-L3 were 11.89%, 6.94%, and 6.72% under normal-dose, and 6.65%, 10.5%, and 6.31% under low-dose, respectively. For iCare QCT, RMEs were 1.21%, 4.28%, and 8.88% under normal-dose, and 2.14%, 4.96%, and 8.59% under low-dose, respectively. RSDs of L1-L3 for Mindways QCT were 5.16%, 2.85%, and 0.47% under normal-dose, and 9.08%, 4.69%, and 0.49% under low-dose, respectively. For iCare QCT, RSDs were 1.11%, 0.81%, and 0.45% under normal-dose, and 2.34%, 0.85%, and 0.33% under low-dose, respectively. The radiation dose in the low-dose protocol was significantly reduced compared with the normal-dose protocol.

Conclusion: Low-dose iCare QCT exhibited high accuracy and precision in measuring lumbar spine BMD, achieving an approximately 85% reduction in radiation dose. These findings highlight its potential as a safer and reliable tool for clinical application.

背景:定量计算机断层扫描(QCT)在骨矿物质密度(BMD)评估和骨质疏松症诊断中的应用越来越受到关注。目的:评估基于欧洲脊柱幻影(ESP)的低剂量iCare QCT测量腰椎骨密度的准确性和精密度。方法:采用配对t检验比较使用Mindways和iCare QCT系统在正常剂量和低剂量扫描方案下测量的BMD值。准确度采用相对测量误差(RME)评价,精密度采用相对标准偏差(RSD)评价。使用Pearson相关系数和Bland-Altman分析来检验测量相关性和一致性。结果:Mindways QCT正常剂量下L1-L3的RMEs分别为11.89%、6.94%、6.72%,低剂量下分别为6.65%、10.5%、6.31%。iCare QCT正常剂量下RMEs分别为1.21%、4.28%、8.88%,低剂量下RMEs分别为2.14%、4.96%、8.59%。正常剂量下,Mindways QCT L1-L3的rsd分别为5.16%、2.85%和0.47%;低剂量下,rsd分别为9.08%、4.69%和0.49%。iCare QCT正常剂量下rsd分别为1.11%、0.81%、0.45%,低剂量下rsd分别为2.34%、0.85%、0.33%。与正常剂量方案相比,低剂量方案中的辐射剂量显著降低。结论:低剂量iCare QCT在测量腰椎骨密度方面具有较高的准确性和精密度,可使辐射剂量降低约85%。这些发现突出了它作为一种更安全可靠的临床应用工具的潜力。
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引用次数: 0
Regulatory aspects of optogenetic research and therapy for retinitis pigmentosa under EU law. 欧盟法律下视网膜色素变性的光遗传学研究和治疗的监管方面。
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-05-09 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1548927
Johannes Freise

Optogenetics has potentials for a treatment of retinitis pigmentosa and other rare degenerative retinal diseases. The technology allows controlling cell activity through combining genetic engineering and optical stimulation with light. First clinical studies are already being conducted, whereby the vision of participating patients who were blinded by retinitis pigmentosa was partially recovered. In view of the ongoing translational process, this paper examines regulatory aspects of preclinical and clinical research as well as a therapeutic application of optogenetics in ophthalmology. There is no prohibition or specific regulation of optogenetic methods in the European Union. Regarding preclinical research, legal issues related to animal research and stem cell research have importance. In clinical research and therapeutic applications, aspects of subjects' and patients' autonomy are relevant. Because at EU level, so far, no specific regulation exists for clinical studies in which a medicinal product and a medical device are evaluated simultaneously (combined studies) the requirements for clinical trials with medicinal products as well as those for clinical investigations on medical devices apply. This raises unresolved legal issues and is the case for optogenetic clinical studies, when for the gene transfer a viral vector classified as gene therapy medicinal product (GTMP) and for the light stimulation a device qualified as medical device are tested simultaneously. Medicinal products for optogenetic therapies of retinitis pigmentosa fulfill requirements for designation as orphan medicinal product, which goes along with regulatory and financial incentives. However, equivalent regulation does not exist for medical devices for rare diseases.

光遗传学在治疗视网膜色素变性和其他罕见的退行性视网膜疾病方面具有潜力。这项技术可以通过结合基因工程和光刺激来控制细胞活动。第一个临床研究已经开始进行,参与研究的色素性视网膜炎失明患者的视力部分恢复。鉴于正在进行的转化过程,本文探讨了临床前和临床研究的监管方面以及光遗传学在眼科中的治疗应用。在欧盟没有禁止或具体规定光遗传学方法。关于临床前研究,与动物研究和干细胞研究相关的法律问题具有重要意义。在临床研究和治疗应用中,受试者和患者的自主性是相关的。因为在欧盟层面,到目前为止,还没有针对同时评估药品和医疗器械的临床研究(联合研究)的具体法规,因此适用于药品临床试验和医疗器械临床调查的要求。这引发了尚未解决的法律问题,对于光遗传学临床研究也是如此,因为基因转移的病毒载体被归类为基因治疗药品(GTMP),而光刺激的设备被归类为医疗设备,同时进行测试。光遗传治疗色素性视网膜炎的药品符合孤儿药品的认定要求,并有相应的监管和财政激励措施。然而,针对罕见病的医疗器械却没有相应的规定。
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引用次数: 0
Drug coated balloons in percutaneous coronary intervention: how can computational modelling help inform evolving clinical practice? 经皮冠状动脉介入治疗中的药物包被气球:计算模型如何帮助告知不断发展的临床实践?
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-04-30 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1546417
Silvia Renon, Rafic Ramses, Ankush Aggarwal, Richard Good, Sean McGinty

Drug-coated balloons (DCB) represent an emerging therapeutic alternative to drug-eluting stents (DES) for the treatment of coronary artery disease (CAD). Among the key advantages of DCB over DES are the absence of a permanent structure in the vessel and the potential for fast and homogeneous drug delivery. While DCB were first introduced for treatment of in-stent restenosis (ISR), their potential wider use in percutaneous coronary intervention (PCI) has recently been explored in several randomized clinical trials, including for treatment of de novo lesions. Moreover, new hybrid techniques that combine DES and DCB are being investigated to more effectively tackle complex cases. Despite the growing interest in DCB within the clinical community, the mechanisms of drug exchange and the interactions between the balloon, the polymeric coating and the vessel wall are yet to be fully understood. It is, therefore, perhaps surprising that the number of computational (in silico) models developed to study interventions involving these devices is small, especially given the mechanistic understanding that has been gained from computational studies of DES procedures over the last two decades. In this paper, we discuss the current and emerging clinical approaches for DCB use in PCI and review the computational models that have been developed thus far, underlining the potential challenges and opportunities in integrating in silico models of DCB into clinical practice.

药物包被球囊(DCB)是一种新兴的替代药物洗脱支架(DES)治疗冠状动脉疾病(CAD)的治疗方法。DCB相对于DES的主要优势之一是在血管中没有永久性结构,并且具有快速均匀给药的潜力。虽然DCB最初是用于治疗支架内再狭窄(ISR),但最近在一些随机临床试验中,包括治疗新发病变,探索了它们在经皮冠状动脉介入治疗(PCI)中的潜在更广泛应用。此外,正在研究结合DES和DCB的新混合技术,以更有效地处理复杂案件。尽管临床上对DCB越来越感兴趣,但药物交换的机制以及球囊、聚合物涂层和血管壁之间的相互作用尚未完全了解。因此,可能令人惊讶的是,用于研究涉及这些设备的干预措施的计算(计算机)模型的数量很少,特别是考虑到过去二十年来从DES程序的计算研究中获得的机制理解。在本文中,我们讨论了DCB在PCI中使用的当前和新兴的临床方法,并回顾了迄今为止已经开发的计算模型,强调了将DCB的计算机模型整合到临床实践中的潜在挑战和机遇。
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引用次数: 0
Molecular diagnostic methods for rapid diagnosis of central nervous system infections. 快速诊断中枢神经系统感染的分子诊断方法。
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-04-22 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1497512
Mallikarjuna Pedduru Venkatareddy, Dinesh Upadhya, Prakash Peralam Yegneswaran, Aneena Varghese, Suryadipali Pahadasingh, Arvind N Prabhu, Kavitha Saravu, Kavitha S Shettigar

Central nervous system infections (CNSI) are serious life-threatening conditions caused by bacteria, viruses, fungi, and parasites and lead to high morbidity and mortality worldwide. Therefore, rapid identification of causative organisms and appropriate treatment are important. The traditional identification methods are time-consuming and lack sensitivity and specificity. Although culture method is gold standard for CNSI, it is time-consuming and microbiology reporting requires several days. Multiplex PCR assays can detect multiple pathogens simultaneously in clinical samples and overcome the limitations of conventional identification techniques. Despite the availability of several commercial molecular-based platforms for the detection of pathogens causing CNSI, there are still limitations in terms of cost, false positive results, and false negative results, which are limited to targeted pathogens in the panel. Moreover, validation of many commercially available and in-house laboratory-developed molecular assays is still lacking. In addition, molecular diagnostic tests need to be used in correlation with the clinical context to ensure better diagnosis and management of infections.

中枢神经系统感染(CNSI)是由细菌、病毒、真菌和寄生虫引起的严重危及生命的疾病,在世界范围内导致高发病率和死亡率。因此,快速识别致病生物和适当的治疗是重要的。传统的鉴定方法耗时长,缺乏敏感性和特异性。虽然培养法是CNSI的金标准,但它很耗时,微生物学报告需要几天时间。多重PCR检测可以同时检测临床样品中的多种病原体,克服了传统鉴定技术的局限性。尽管有几种基于商业分子的平台可用于检测导致CNSI的病原体,但在成本、假阳性结果和假阴性结果方面仍然存在局限性,仅限于面板中的目标病原体。此外,许多市售和内部实验室开发的分子分析方法的验证仍然缺乏。此外,需要结合临床情况使用分子诊断测试,以确保更好地诊断和管理感染。
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引用次数: 0
Advanced computational tools, artificial intelligence and machine-learning approaches in gut microbiota and biomarker identification. 先进的计算工具,人工智能和机器学习方法在肠道微生物群和生物标志物鉴定。
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-04-15 eCollection Date: 2024-01-01 DOI: 10.3389/fmedt.2024.1434799
Tikam Chand Dakal, Caiming Xu, Abhishek Kumar

The microbiome of the gut is a complex ecosystem that contains a wide variety of microbial species and functional capabilities. The microbiome has a significant impact on health and disease by affecting endocrinology, physiology, and neurology. It can change the progression of certain diseases and enhance treatment responses and tolerance. The gut microbiota plays a pivotal role in human health, influencing a wide range of physiological processes. Recent advances in computational tools and artificial intelligence (AI) have revolutionized the study of gut microbiota, enabling the identification of biomarkers that are critical for diagnosing and treating various diseases. This review hunts through the cutting-edge computational methodologies that integrate multi-omics data-such as metagenomics, metaproteomics, and metabolomics-providing a comprehensive understanding of the gut microbiome's composition and function. Additionally, machine learning (ML) approaches, including deep learning and network-based methods, are explored for their ability to uncover complex patterns within microbiome data, offering unprecedented insights into microbial interactions and their link to host health. By highlighting the synergy between traditional bioinformatics tools and advanced AI techniques, this review underscores the potential of these approaches in enhancing biomarker discovery and developing personalized therapeutic strategies. The convergence of computational advancements and microbiome research marks a significant step forward in precision medicine, paving the way for novel diagnostics and treatments tailored to individual microbiome profiles. Investigators have the ability to discover connections between the composition of microorganisms, the expression of genes, and the profiles of metabolites. Individual reactions to medicines that target gut microbes can be predicted by models driven by artificial intelligence. It is possible to obtain personalized and precision medicine by first gaining an understanding of the impact that the gut microbiota has on the development of disease. The application of machine learning allows for the customization of treatments to the specific microbial environment of an individual.

肠道微生物群是一个复杂的生态系统,包含各种各样的微生物种类和功能能力。微生物组通过影响内分泌学、生理学和神经学对健康和疾病产生重大影响。它可以改变某些疾病的进展,增强治疗反应和耐受性。肠道菌群在人体健康中起着关键作用,影响着广泛的生理过程。计算工具和人工智能(AI)的最新进展彻底改变了肠道微生物群的研究,使识别对诊断和治疗各种疾病至关重要的生物标志物成为可能。本综述通过整合多组学数据(如宏基因组学、宏蛋白质组学和代谢组学)的前沿计算方法进行研究,提供了对肠道微生物组组成和功能的全面了解。此外,机器学习(ML)方法,包括深度学习和基于网络的方法,因其发现微生物组数据中复杂模式的能力而被探索,为微生物相互作用及其与宿主健康的联系提供了前所未有的见解。通过强调传统生物信息学工具和先进人工智能技术之间的协同作用,本综述强调了这些方法在加强生物标志物发现和制定个性化治疗策略方面的潜力。计算进步和微生物组研究的融合标志着精准医学向前迈出了重要一步,为针对个体微生物组谱的新型诊断和治疗铺平了道路。研究人员有能力发现微生物组成、基因表达和代谢物谱之间的联系。人工智能驱动的模型可以预测个体对针对肠道微生物的药物的反应。通过首先了解肠道微生物群对疾病发展的影响,有可能获得个性化和精准医疗。机器学习的应用允许根据个人的特定微生物环境定制治疗方法。
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引用次数: 0
Drilling around the corner: a comprehensive literature review of steerable bone drills. 钻转角:可操纵骨钻的综合文献综述。
IF 2.7 Q3 ENGINEERING, BIOMEDICAL Pub Date : 2025-04-09 eCollection Date: 2025-01-01 DOI: 10.3389/fmedt.2025.1426858
Esther P de Kater, Paul Breedveld, Aimée Sakes

Introduction: Orthopedic procedures often require drilling of tunnels through bone, for instance for the introduction of implants. The currently used rigid bone drills make it challenging to reach all target areas without damaging surrounding anatomy. Steerable bone drills are a promising solution as they enable access to larger volumes and the creation of curved tunnels thereby reducing the risk of harm to surrounding anatomical structures.

Method: This review provides a comprehensive overview of steerable bone drill designs identified in patent literature via the Espacenet database and in scientific literature accessed via the Scopus data base. A Boolean search combined with pre-set inclusion criteria returned 78 literature references describing a variety of drill designs.

Results: These drill designs could be categorized based on how the drilling trajectory was defined. Three methods to influence the drilling trajectory were identified: (1) the device (57% of the sources), (2) the environment (15% of the sources): the path is defined based on the tissue interaction forces with the surrounding bone or (3) the user defines the drilling trajectory (28% of the sources).

Discussion: The comprehensive overview of steerable drilling methods provides insights in the possibilities in drill design and may be used as a source of inspiration for the design of novel steerable drill designs.

导读:骨科手术通常需要在骨头上钻隧道,例如植入物。目前使用的硬骨钻头很难在不破坏周围解剖结构的情况下到达所有目标区域。可操纵骨钻是一种很有前途的解决方案,因为它们可以进入更大的体积,并创建弯曲的隧道,从而降低对周围解剖结构伤害的风险。方法:本综述提供了通过Espacenet数据库的专利文献和通过Scopus数据库访问的科学文献中确定的可操纵骨钻设计的全面概述。布尔搜索结合预设的纳入标准返回了78篇描述各种钻头设计的文献参考。结果:这些钻头设计可以根据钻井轨迹的定义进行分类。确定了影响钻孔轨迹的三种方法:(1)设备(57%的源),(2)环境(15%的源):路径是根据组织与周围骨骼的相互作用力定义的,或者(3)用户定义钻孔轨迹(28%的源)。讨论:对可转向钻井方法的全面概述为钻头设计的可能性提供了见解,并可作为新型可转向钻井设计的灵感来源。
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引用次数: 0
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Frontiers in medical technology
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